LOCUS       XM_008763085            6016 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus coiled-coil domain containing 142
            (Ccdc142), transcript variant X1, mRNA.
ACCESSION   XM_008763085
VERSION     XM_008763085.3
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051339.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_008763085.4.
            
            On Jan 21, 2021 this sequence version replaced XM_008763085.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6016
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="4"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..6016
                     /gene="Ccdc142"
                     /note="coiled-coil domain containing 142; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 12 ESTs, 15 long SRA reads, 3 Proteins, and 97%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 153 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:297380"
                     /db_xref="RGD:1561779"
     CDS             2391..4595
                     /gene="Ccdc142"
                     /codon_start=1
                     /product="coiled-coil domain-containing protein 142
                     isoform X1"
                     /protein_id="XP_008761307.1"
                     /db_xref="GeneID:297380"
                     /db_xref="RGD:1561779"
                     /translation="MARASRSSGLLPPITNVPPSWAQPLGDGEERGKGKRGGLELLAA
                     MSAPCPDSGRQPWAPESASGPMPFALQRLRAELLRLHREREQLLRARDCARHLQAVVR
                     LLRSGSSAGSFSLQQLHGDLQMCPSRRAAQRLGFPGSRETLLLARPVGLAAQHLDANI
                     EMQLRTLGRAPASLGLTSQLAELLLALPFYHTLQGQSLSFVPGAARPFPAARVLHLLA
                     AERGCQVADRLAEALGRSGLQDQLRRQCDQERELLPGLLGLIGGVASRDSSGLRLGGP
                     GALWSQYWTMLWAACAQSLDLRVGPWGDPKAVAQQLSQALCQASLPQECEKELLSLCH
                     SLFHRSLVCSWDQGFCQALGSAVGGQSSPASPSTAELLQRLFPPLLDILRQPRPELSL
                     CQPAGPTPVALGLCTLQTTLLWFLGKAQQHLAAWAPGPFLLLIQKDLPPLLHAVEALS
                     SLASEAAFSLEVEQQLGLEIQKLTARMQLLPKESLSLFFQECHKQATQGFKLHMPRGG
                     YWRLRLCPEHPSDPSEYARVVVYTVLEPVLQGLRGLPPEAQAPALSQALTATLGAWLD
                     HILTHGIRFSLQGALQLKQDFGVVREVLEQEQWGLSPELRQTLLSLSIFQQLDGALLC
                     LLQQPLPKNPVQRRPHRCCFCNEVQTIELPTSSLNSLESLAPPLRPGVSPAQNTHLLS
                     TLGGGGRGGGGGGPSPEAYLAGNQQAWLALRLHQHPRWHLPFFSCLGTSPEP"
ORIGIN      
        1 ttaaagattt atttatttta tttatatgtt agtacactgt agttctcttc agacacttca
       61 gaagagagca tcccattaca gatggttgtg agccaccatg tggttgctgg gaattgaact
      121 caggacctct ggaagagcag tcagtgctct taaccgctga gccatctctc cagccccaag
      181 attttttttt ttattaagca aacagaagtt tgtgtgatga gtcaaaagcc ctaccaaata
      241 aaagataact ttaaaatatt ttcttctatt tttaaattat atgtatctct gtgagcatga
      301 gaaggtgcct ccagagacat cggagcccca ggaagttaca ggctgtttca agccaactga
      361 acaagggtcc tctacacgag cagttgcgct gaggcatctc ttcagcttca attaattttg
      421 agacgtccta actttggagg cagggttcat gaatctgcag ctagagccaa tttttttttt
      481 tttaaagatt tactttattt atatgtgtac actgtagcct gtagctatct ttagatgcac
      541 cagaagaggg catcagatct cattatagat ggttgtgagc caccatgtgg ttgctgggaa
      601 ttgaactcag gacctttgga agagcagtcg gtgctcttaa ccgtagagcc aatttttgtg
      661 tgacctgaaa gagattggta ttagctcagg acgaccaacc ccctgctcta gaccaagttc
      721 tcaacacgaa agagatttat ttgccctaga gggataaagg gcaggtaata agggataaaa
      781 acaggagata gaggaccaaa ggaaaagagg aagggaacaa aggagaggag ataaaagggc
      841 caaggtattt ttcctggagg acaaagggct gctctggata gaggagacag aagtggccca
      901 tagacaaaca gaggtttata acagtaaagg gggaaccctg tgttaggatg aggtgtttaa
      961 ttttgattgg gcgtgttaat tggatgaact aaaggaggtt ttgattactg gacttcagta
     1021 ttttgatagc tgaacctttg tagtcagcct cgggaaaaag aagtggccaa ttaagggaat
     1081 agaccttggt agctagcatt aggaatataa caacatgggg gtttttgtct tgttttgttt
     1141 tccccatttt gttttgtttt gttttgtttt gttttgttta gcaaggcaga gagaatggaa
     1201 gaggagggaa tggttctgcc agaaccacgc ccacattcaa gttcgccata gtctcttcat
     1261 aacctgtatc tttagtctga ggacttgttg actctgagat tctagaaatg aatgacaagg
     1321 aaagcagctg tatatttagc ttgtcagtga tttcgtatct gatccttctg tttctctctc
     1381 agtaactgta ccaactactt caggcatccg acccccaccc ccgtcctttc atgccactct
     1441 cagagactgg gtctcacact gtagcctagg ctaacctgaa actgtatagg ccaagcatcg
     1501 atcaaccttc tgtctcagcc tcttgagtgc tggtcagtaa taatattctt ttttccttgc
     1561 ttcagggtct tgtcctctgt tcacaatatt tttccaaagg cgcttgtaac cactgcctag
     1621 acctcaaact ggagatcttt aaatgtcaat tttgcccagc ttagagcgtt acagcaacag
     1681 cagcccgagg accccttgct gtttgttcct ttgcctagga tctttaagag tagggcccga
     1741 acctgctggt tcccaaagct ctcagagatg actgaaagaa aacatgaagg aggttgaggc
     1801 tggctgtggt gatatacata cacatactaa taacttcagc agaggaagcc gaggcaggca
     1861 gacaactgtg agctttagac cagcctggtc tacatgagag ttttaggata gctaggaaca
     1921 tgcatactga gactcaaaga gaacaaaaca gcacgcccac aaacgaacat gaagacatga
     1981 tcaaagcaaa aggaagctga ggtcttgctt tcctcttttc tgtagtagat ctccgcaggg
     2041 ccccagaggg cagaccacag gaaggtggta cattagggag tctgagatgg aggggccatg
     2101 ggtctcttgc cgtcaggtca cactactcac ctaggttgac tttcgctaca gagtttagca
     2161 tcagcgccac ctcccgtcaa tggtgactag aaagtctagc tataattgga tgcccgcgaa
     2221 aggccgggcg taaaaagtaa gtgggtggcc atctttgtta ggggcagagg ccacggctac
     2281 ggagcctcag tgagtccacg aaacttccgg cggctagctg gtgagtcctg gtgccccacg
     2341 ggaagcgtga gagcggcgaa cgttagcttc gtttgggact cgccgtacaa atggcccggg
     2401 cgtcccgctc tagtggcctt ctaccgccaa tcactaacgt acccccgtcg tgggcgcagc
     2461 ccctgggcga tggggaggag cggggcaaag ggaagcgcgg agggctggag ctactggctg
     2521 caatgagcgc cccgtgcccg gactccggca gacagccctg ggctccagag tctgcaagcg
     2581 gcccgatgcc cttcgctctg cagcggctcc gggccgagtt gctgcgtctg caccgcgagc
     2641 gagagcagct cctgagggcc cgggactgcg cccgccacct gcaggcggtc gtgcggctac
     2701 tccgctccgg ctcctcggcc ggttccttct ccctgcagca gctgcacggc gacttacaga
     2761 tgtgcccttc gcgtagggcg gctcagcgcc ttggtttccc gggctccagg gagacgcttc
     2821 ttctggctcg ccctgttggg ctagctgcgc agcacctgga tgctaacatc gagatgcagc
     2881 ttcgcaccct aggccgggca ccggctagcc tgggcctgac gtcccaacta gccgaactgt
     2941 tgctggccct tcccttctac cacactctac agggacaatc cctgagcttc gtccccgggg
     3001 ccgcgcgccc attccccgcg gcccgtgtgc tccacctcct ggctgcagag cggggttgtc
     3061 aggtggcgga tagactggct gaagcccttg gcagatcggg cttgcaggac cagctccgtc
     3121 ggcagtgcga ccaagagcga gagctgctgc ccgggctgct gggcctaata gggggcgtgg
     3181 ctagtagaga cagcagtgga ctgaggcttg gagggcctgg agccctgtgg agccagtatt
     3241 ggaccatgct gtgggcagcc tgtgctcaga gtttggactt acgcgtggga ccctggggcg
     3301 accccaaagc agtggcacaa cagctgagtc aggcactgtg tcaagcatcc ctgcctcagg
     3361 agtgtgagaa ggagctgttg tctttgtgtc acagcctatt tcatcggtct ctagtctgca
     3421 gctgggacca agggttctgc caggccttgg gatcagccgt gggtggtcag agcagccccg
     3481 cttcaccatc cactgctgag ctgttgcagc ggcttttccc tcccctcttg gatatccttc
     3541 gccagcctag gccagaactt agcctgtgcc agcctgcagg tcctacgcct gtcgctctgg
     3601 gactctgtac cctgcagacc accttgctct ggttcttggg caaagctcag cagcacctgg
     3661 cagcatgggc gcctggtccc ttcctactcc tgatccagaa ggacttgcct cctcttctgc
     3721 atgcagtgga agcgctgtcc agcctggcct ccgaggcagc cttcagtctg gaggtggagc
     3781 agcagctggg tctggagatc cagaagctga ctgctaggat gcagctcctg cccaaagagt
     3841 cgctgagtct ttttttccaa gaatgtcata agcaagccac acaaggcttc aagctccaca
     3901 tgccaagggg tggatactgg aggcttcgac tgtgtcctga acatcccagt gaccccagtg
     3961 agtacgctag ggtggtggtc tacactgtgt tggagcccgt gttgcaagga cttcgaggat
     4021 tgccacccga agcccaagcc cctgccctca gccaggcact gacagccaca ctgggcgcct
     4081 ggcttgacca catccttacc catgggatcc ggttcagcct gcagggggcg ctgcagctca
     4141 aacaagactt cggagtggtc agagaggttc tggaacagga gcagtggggc ctgtccccgg
     4201 agcttcgcca gactctgctc tcactcagca tcttccagca gctggatggg gccctgctgt
     4261 gtcttctgca gcaacccctg cccaagaatc cagtccagag aagacctcac cgttgctgtt
     4321 tttgtaatga ggtccagacc attgaactgc ccaccagcag cctcaacagc ctggaaagtc
     4381 tggcaccccc tctaaggcct ggagtctccc cagcccagaa tactcacctg ctaagcaccc
     4441 tggggggagg agggcgaggg ggagggggag gaggacctag tcctgaggct tacctggctg
     4501 gaaaccagca agcctggctt gccctgaggc tgcaccaaca ccctcgttgg cacctgcctt
     4561 ttttctcttg cctagggaca agtcctgaac cctaagttga ccagagccag gagttccaaa
     4621 ccctgcccca ggcaatgaac tgtatgttag agaggcttaa aactgggcgc ttgataaaac
     4681 acgttcataa actagagtct ggaattgaac cccagatgat cctaggatct gcaattcaga
     4741 gtaataggca aactacagcc tgaaatctga aagtcggaaa caatggagac atcttagagc
     4801 tagaaataga agggggtcta tagggttagc tctcaggaga cggaagcaag ctacttgctt
     4861 tctcttgaat cccaggagca aggctaaagt taattcatga ggaaacacag aggaagcaaa
     4921 catttctaca tgtggaggga cctgtcttac cccttcttca tttctacttt tagtcattag
     4981 gctgcaggac cttgacattt aagctttggc tgttgctacc tgggcaaagc ttgccttctg
     5041 gtgggtggac aatccctgct gtgatcgtcc tctcaacgga aggagccagg atttaggatg
     5101 gtgctgacct agatctagta ggtaggacac tgaaaaggct gaagggcgtt ttcgtacgta
     5161 ggggggtctt acacattcac tgcctatgct gtgtgtggca cagaacactg ctaatggcca
     5221 aagtatttat ggaccaccaa ctctgggccc cttggcagcc ccggagggca gccgggagaa
     5281 gtaccccgga ggccaccgga agtctgtttc aataaaagga tccccagtgc tactccttcc
     5341 ggggcggagg taaccatggc ggcggctttg gctcggctcg gactacggcc ggtcaagctg
     5401 gttcgagttc agttctgccc gtttgagaag aacgtggagt caacaaggtt ccctggtccc
     5461 cggacgcgct taccctgccc tcccaccgca ggacctttct ccaggcggtg agcagcgaga
     5521 aagtccgcgc caccaacctc aactgctctg tgatcgccga cgtgaggcat gacggctctg
     5581 agccctgcgt ggacgtgtta ttcggagatg ggtatcggct gattatgcga ggagcccacc
     5641 tcaccactca ggaaatgtta agtgccttgg cctcccacat tcgggctagg aacgctgccg
     5701 cagcagcatc tgcacccagc gcagacaagg tcgccccagg tacgggtacc cgccgatgac
     5761 attgtagaag aatcccaaca accgacgttg gcttgaaact aaagacagtg gtttaagaag
     5821 agctgggctt aatcactcta aatgctgcat ggaggtcatg atactgagca agaaccctaa
     5881 caacagtgct gctggggcaa gataagattg ggtggtgaag ggtccgtaca aatttgaatt
     5941 tttctttctc actgcttaac catatttgaa tctgtcaccc acgtacattt taattaaata
     6001 tttattgcca aatgaa
//
