LOCUS       XM_003749494            7640 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus coiled-coil domain containing 141
            (Ccdc141), mRNA.
ACCESSION   XM_003749494
VERSION     XM_003749494.5
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051338.1) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_003749494.6.
            
            On Jan 21, 2021 this sequence version replaced XM_003749494.4.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7640
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="3"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..7640
                     /gene="Ccdc141"
                     /note="coiled-coil domain containing 141; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 1 mRNA, 21 ESTs, 3 Proteins, and 100% coverage of the
                     annotated genomic feature by RNAseq alignments, including
                     9 samples with support for all annotated introns"
                     /db_xref="GeneID:311134"
                     /db_xref="RGD:1593250"
     CDS             189..4781
                     /gene="Ccdc141"
                     /codon_start=1
                     /product="coiled-coil domain-containing protein 141"
                     /protein_id="XP_003749542.2"
                     /db_xref="GeneID:311134"
                     /db_xref="RGD:1593250"
                     /translation="MSCKESPHVGVSTTTVSSVAVQAGDSKIVIAVVKCGKWVRLQLA
                     EAQPNLLEIGSSQDETRKLLHDHELLLAKLKALEDRVWGLLQEADRTAEANKEQSEVY
                     DAMAQTLGEAWATLVSMLERRRELLGLTSEFFQSALEFAIKIDQAEDFLQNPHEFESA
                     EALQSLLLLHDRHAKELLERSLVLLNKSQQLTDFIEKFKCDGSPVNSELIQGAQSSCL
                     KIDSLLELLQDRRRQLDKHLQQQRQELSQVLQLCLWDQQESQVSCWFQKTIRDLQEQS
                     LGSSLSDNKELIRKHEDLTIKAKEWDLAMEKLKSQALGILLSKDLTEKEHLQLSNQKL
                     NRLQEEFGRLMVDRKAWLTMAHDFFTSANEAFDVLGKVEDYLKLLKSEGLSLPALAAK
                     HEELHREIKDSTAAALQKGRTLISQVDSCRAQVTGIHETMGRIQKRVDRLSQQCTAHQ
                     EFALKKQQLATSVDDYLRKVEMSVQEMRLVLATTLDVGSSPSESEKILNKYLELDIQA
                     KETAHALEAAAKITTEKNELELNEVALLPFKVKRLEEELSTLSRSVSYRSQVLQTYIA
                     FRKSSEEVEEQLQSLKEFYLTESPWEDEDDAVVTCQSNSAERKWQLFLKKSFLTQDLS
                     LEFLNLISMAKENEILNVKKEMHIVENVMEKQTNGREELSRLRMAWHLKAMEGKPVKE
                     RWETFKEKLKKTTHNVKLLHEVLMPVSALDLGGNLQSMSDLRRRWIAMQPQLQQLHED
                     VQQIMKEWEVLSGQGVPLKEKAEQLKDLIHLHQRQRERIQEYEEILYKTVQFHQVKEE
                     LTHLIKPRELELLAQPMELEGSKEVLMQLGRSQGRRAHVDHLHRLALSLGVDIISSVQ
                     RPNCSNISAKSLQQQLEALELDSRDWSAKAKEYEQVLACSLEYCTTREEINELKESFK
                     DIKKKFNNLKFNYSKKNEKSRNLKTLQYQIQQVETYADKIQALRKKMEKVNKKISDSV
                     LSYPSNKANTLVEAMEDLKKHVDDFDKVVTDYKMNLDLTEHLQEVIEECNFWYEDASA
                     TVVRVGKYSMECQTREAVDILHRQFQKFVTPSVPQQEERIQEVVSLAQRLYGLEEGQK
                     YAEKIVTRHKEILESITELCGSLVELKEKLMQGDVPKVNSNLEDFHGNSIDLLKEPGR
                     DEQTTFSEERSEGQAQGADVSAINGTREDGLPVGLRQSFDKEDSAQGLTLPEDTLSGE
                     DSECISSDDISLPPLPVTPESPLAPSDMEVEEPASSSALALHISGYRMRTGTGGLGKA
                     PESVLPPPTAFTDGYHNKKDTFTSHFERPYPQFKAEPLLTSRGSGEMSTKLHVNVKCP
                     ARMPREVHDKALPPSSQAQEISLGTQEKVHADSNVTKTQDRLHAALDVSPGLSSQSDT
                     SRSHQRQVGPQGDRKNSSAEKSVVSLAGQAPHFSRLLSNVTVTEGSPVTLEVEVTGFP
                     EPTLTWFKKGQKLCADGHLQVLHKDTKHSVFIPKVCEADAGLYVAQAQNSSGTLSSKA
                     ILHVTGNHGPPITRINWIVLCIIYVSVSVIYWLLTQ"
ORIGIN      
        1 ctgtccctcg agtttcggat aatggcaaaa ataacaggca cttactgata ccataggggg
       61 taatcattgt gagcacagag cgtttccctg aatgagtccg ggtagcctca tggaagcctt
      121 ctgacatgac cagcagacag catccctccc aaggctactc agggtttaaa ccctgcttct
      181 gaagtgacat gtcctgcaaa gaaagtcccc acgtgggtgt ttccaccacc actgtcagct
      241 ctgtagctgt gcaagctggg gactccaaga tcgtgatagc cgttgtcaag tgtggcaaat
      301 gggtgcggct ccaactggct gaggcacagc ccaatctcct agaaattggg agcagtcaag
      361 atgaaaccag aaaactgctt cacgatcacg agctccttct ggccaagctt aaggccttgg
      421 aagatcgtgt gtggggactc ttacaggaag cagacaggac ggctgaagca aacaaggagc
      481 aaagtgaggt gtacgatgcc atggcccaga ctctgggcga agcatgggcc accctggtct
      541 ccatgcttga aagaagaagg gagctcctcg gactgacatc tgagtttttt caaagcgcct
      601 tggagtttgc tataaaaata gaccaagctg aagattttct gcagaatcct cacgagtttg
      661 agagtgccga agccttacag tcacttcttc tgcttcatga ccgacacgcc aaagaactct
      721 tagaacgatc tctagtcctt ttaaacaaaa gccaacaact cactgacttc atagaaaaat
      781 tcaagtgtga tggatctcct gtgaattctg agctcatcca gggagctcag agcagttgtc
      841 tgaagatcga cagcctcctt gaacttctgc aagacaggag aaggcagctg gacaagcact
      901 tgcagcaaca gaggcaggag ttgtctcagg ttctgcagtt atgtctgtgg gaccaacaag
      961 aaagccaggt ttcttgttgg tttcagaaaa caataagaga tctgcaggaa cagagtctgg
     1021 gttcatccct ttcagacaac aaagagttaa tccgtaagca cgaggacctg accatcaaag
     1081 caaaggaatg ggatttggcc atggagaagc tgaagagcca ggctctgggg attctgctgt
     1141 caaaggactt gacagaaaag gaacatctgc agctctctaa ccagaaactc aatcggcttc
     1201 aagaagagtt tggacgactc atggtggaca ggaaagcctg gctgacaatg gcgcatgact
     1261 tctttaccag tgctaacgag gcatttgatg tacttggaaa agttgaagat taccttaagc
     1321 tccttaaatc agagggttta agcctgcctg ccttggcagc aaaacatgag gaattacaca
     1381 gagaaattaa agactctaca gccgccgctc tgcaaaaggg acggacctta atcagccaag
     1441 tagactcctg ccgcgctcag gtgacaggaa ttcatgagac gatgggacgc attcagaagc
     1501 gagtggatcg tctcagccag caatgtacag cgcaccagga gtttgccctt aagaaacagc
     1561 aattagcaac gtcagtggac gactacctaa ggaaggtgga aatgtcagtt caagaaatga
     1621 ggttggttct tgctaccaca ttggatgtcg gttctagtcc ttctgaatca gagaagattt
     1681 taaataaata tctggaattg gatatccaag ccaaggagac agcacatgca ttagaagcag
     1741 cagcaaaaat cacgacagag aaaaatgaac ttgaactcaa tgaagtggca ttgcttcctt
     1801 ttaaagtgaa acggctagaa gaagaattaa gcacgcttag tcgaagcgtc agctacaggt
     1861 cacaagtcct gcaaacttac atagcatttc gaaagtcatc cgaggaggta gaggagcagc
     1921 ttcagagcct aaaggaattt tatctgaccg aaagcccttg ggaagatgaa gacgatgctg
     1981 tggtcacgtg ccagtctaac tctgccgaaa gaaaatggca gctatttcta aagaagagtt
     2041 ttttgaccca ggacttgagc ctcgagttcc tgaacttaat aagcatggca aaagagaatg
     2101 agatattaaa tgttaaaaag gaaatgcaca ttgtggagaa cgtgatggaa aagcaaacaa
     2161 acggaaggga agagctcagc cgtctccgaa tggcatggca cctcaaagcc atggaaggca
     2221 agcctgtgaa agaacggtgg gaaacgttca aagagaaact taaaaagaca actcacaatg
     2281 taaaacttct ccatgaagtt ctgatgcctg tctctgcgct ggaccttgga gggaacctcc
     2341 agagcatgtc agatctgcga agaaggtgga tcgcaatgca gcctcagctc cagcaactgc
     2401 atgaggacgt tcagcaaatc atgaaagagt gggaagtgct aagtggtcag ggagttcctt
     2461 tgaaggagaa ggctgaacaa ctgaaggacc ttatccatct ccatcagagg cagagagagc
     2521 gaatccagga atatgaggaa atcctgtaca agacagtcca gttccaccag gtcaaggaag
     2581 agctgaccca tctcatcaaa ccaagagaac tggagctcct agcacagccc atggaactgg
     2641 aaggttctaa ggaggtcctg atgcaactgg gccgttctca aggaagacgg gcacacgtag
     2701 accatctcca tcggctggcc ctatccttag gagtggacat catttcatcc gtgcaacgac
     2761 ctaattgctc gaatatttct gcaaagagcc tgcagcagca gctggaggcc ctcgaactgg
     2821 atagcaggga ttggagtgcc aaagccaagg aatatgaaca ggtcctggcc tgcagcttgg
     2881 agtactgcac cacacgagag gagatcaatg agctcaaaga gtcattcaaa gatataaaaa
     2941 agaaattcaa caatctgaag tttaattact ctaagaaaaa tgagaaatct cgaaacttaa
     3001 agactcttca atatcaaatc caacaagtgg aaacatatgc tgacaaaatt caggctttaa
     3061 ggaagaaaat ggaaaaggtt aataaaaaga tatccgattc agtcttaagt tatccaagta
     3121 ataaagctaa cacccttgtg gaagccatgg aggatttgaa aaaacacgtc gatgactttg
     3181 acaaagttgt gacagattat aagatgaatt tggacctgac tgagcatctc caggaagtaa
     3241 tagaagagtg taacttttgg tatgaggatg ctagtgccac tgtggtaaga gttgggaagt
     3301 attccatgga gtgccaaaca agggaagctg tagacatcct ccacaggcag ttccagaagt
     3361 ttgttactcc ctcagtgccc cagcaagaag aaaggattca ggaggtcgtc agccttgctc
     3421 aacgactata tggtttggaa gaggggcaga aatacgctga gaaaatcgtc acaagacaca
     3481 aggagattct tgaatctatt actgaattat gtgggtctct cgtggaactt aaagaaaaac
     3541 tgatgcaggg agatgttcca aaggtgaatt caaatttgga agatttccac ggcaattcca
     3601 ttgatctgct aaaggagcca gggagggatg agcagacaac attcagtgaa gaaaggagtg
     3661 aggggcaggc gcagggagca gatgtgtcgg ccatcaatgg aacaagagaa gatgggcttc
     3721 ccgtgggctt gaggcagtcc tttgacaaag aggacagtgc ccagggtctg accctgccag
     3781 aagacacgct ctccggagaa gactctgagt gtatctcctc tgatgacatt tctttgcctc
     3841 cactgccagt gacccccgag tcccctctgg caccatcaga catggaggta gaagaacctg
     3901 ccagttcttc agccctcgcc ctgcatatca gcggctacag gatgcgtaca gggacaggtg
     3961 gtctagggaa ggccccggag tctgttctgc ccccacccac tgcttttact gatgggtacc
     4021 ataataagaa agacacattt acaagtcatt ttgagaggcc ctatccacag ttcaaagctg
     4081 aacccttatt aacctccaga gggtcaggag agatgagtac caagttgcac gtcaatgtga
     4141 aatgtccagc gcgcatgccc cgtgaagtgc acgacaaagc tttgccgcca agctcccagg
     4201 ctcaggagat ctcgctagga acgcaggaga aagtgcatgc tgattctaac gtcactaaaa
     4261 cccaagacag gctgcatgct gcccttgatg tatcccctgg cctcagctct caatcagaca
     4321 ccagcagaag ccatcagagg caagtgggtc cccaaggaga caggaaaaac tcatcagcag
     4381 aaaaaagcgt ggtcagccta gctggccagg cgcctcattt ctccaggctg ctgtccaatg
     4441 taactgtcac ggaaggttcc ccggtgactt tggaagtcga agtaacagga ttcccagagc
     4501 ctacactgac atggttcaag aagggccaga aactgtgtgc agatggacac ttacaggttt
     4561 tgcacaagga cacaaagcat tcggtgttca tcccgaaggt atgtgaggca gatgctggcc
     4621 tctatgtggc tcaagcccaa aactctagtg gcaccctgtc ttccaaagcc atcctccatg
     4681 tgacaggtaa ccatgggcca ccaattacaa gaataaactg gattgtgctg tgtatcatct
     4741 atgtcagcgt atcagtaata tactggctac ttacacagta gtgatatgtt gccatcaatg
     4801 gacattttta tgagcctaaa agacaatatg gttgtttatt ttctcatgca tcacacaaag
     4861 caccccctaa cacacacaca cacacacaca cacacacaca cacacacaca cacatgcaca
     4921 cacaccaatt catctccact ttgactaatc ccactgctag gtggaataat tgtattttct
     4981 ctacaattca acatacttgg ggaacacggg aaattatata cagtgagtaa tgatgcattc
     5041 tgtactctag gaagagaaat attctgtata ataagctgat ctcttgttta aaggcatgtg
     5101 aatgctcaca gagatcacaa ggatcatagg gttgtgatct aattttcaaa tccaaatttt
     5161 tgataatttc tctttaaccg tgttcacaaa ccatctcttt gtagggcatt acatcaaatt
     5221 gaagttgtga ttctcaaaat tgtattagct ctcctttcaa ctgtgctttt cccattttga
     5281 tcttgtttac tgagcaaact tgacctgtgc tgtgtcaaca tactctacat tcctgagtct
     5341 gagaatgtca ctgtccataa ccattccacg agaaggtctc ttgggcttga tgttggagaa
     5401 cagatgtgcc tttagcttca aagtggagtc agcctttctg ttagctctgc acgtcctatg
     5461 tcgagatgga atacaggctg caggaagaga ccagttttct ccccattctt ccactgctgt
     5521 gtattggcca ccctgtgcat atctgtaggc gggccctact gcgtctgaca ttgctgctgc
     5581 tgctgctgct cctgctgaac actcgtgtag ccattcacaa ggcatctcag tgcctcacct
     5641 tctcatctgg aagaggggct catctacctc ttgacaaccg cgtttttgtc ttacgtcctg
     5701 tggtgatgcg gccagtggaa aagtactcag tgaagactca ttacaatgct tggtatgatt
     5761 tgccatcttg ctactcatca cccattaatt ccctttcaaa tgcagatctt ttagaatatt
     5821 aaatgaaaag agtgctgtta atatgtaatt ccccactact cccttggggg agggtaagac
     5881 tgatgttcta tgaattagag tttaaattcc tttctaactt cttacaacta catccttttc
     5941 aaaggctttg gacagtaacc tccggaggat atagttagtg tattttaggg gggagtctgg
     6001 gaaagatagg agaagaaaaa tctagccttc ttttgtgcaa ttattactgt aatattgaag
     6061 aatgttatat ggctttctaa tatgcattat tcaaaaaaag agaggcattt gttttcatat
     6121 tttaaacttt gtcatgctag ggtaaaatct tcagttgaaa gaataattta ttgcagagtt
     6181 ttgatgaagg gaagaaatta attatgttgc tggaagactg tctacaaata atcaaaatat
     6241 ttaaatagga tgtatttgac gtggtattaa aaagctactg aatattgtgg aagataagaa
     6301 atgtctagta aaaagttggc tatttttttt cttgtgctgt gtattgcatt taattaaaaa
     6361 actgtaactg ttttctatca acttttgaca gaaagctatt aaaaatcata tgtataatca
     6421 tgtgtgtgtg tgtgtgtgtg tgtgtgtgtg tgtgtgtgtg tgtgtgtgtg tgatcctgag
     6481 gacctcagtc tttttgttgt catcattttg tccaattcta agattttcca tatcttacct
     6541 agctgctatg gcccatgtgg aagctaaatc ataaaatctg ttcatgctca aaggagggaa
     6601 gcaggtaaca aattccaccc cacacacttt gtggcactta ttaatctgat gaggtctctg
     6661 ttctgatgcc atcaccctgg tggtatttat gtttgaagac tgcctgagga tgtgaaatgc
     6721 aagctcactt tacctgtttc gcttcagtta atattcttcc ttcagggagc cagatgacat
     6781 agaccttcat cgtgatgtat gacccactac gacctgtaaa ccccgccccc caggatgcac
     6841 atttgtgtgt atgtataaac tgagcctctg tattggagaa aaatactgtg tgggtgttca
     6901 aggtataatt caaacagctt tgtaaatatc tcatccatcg agggtatgag cgggctattc
     6961 atgtagcagt gaggaattag aagctagccg caggctattt ttatattcat tttgaaaaac
     7021 gtaagtatgg gtatccttac tgctggagct tctatcttta ctggagtttt cccttgtgaa
     7081 ggcgtattga aacgccaggt ttaaggttag cccctgatga gttatccgtc ttccagtgac
     7141 cagcttccca cctatgttta caagcaccac ccagtaaact ctgtgggcca cacatacaaa
     7201 gaaaatgtga aaatgacaaa gggatttgtt ggaaagaaca ttttcagcag cagaggagga
     7261 gggtgacaga ggggatgtga aaaatgacta aaattcatca tgtacaagtg tatgaaactc
     7321 tcaaagaact aaaatggaaa agaaatgtga gaaaaattca agtaaggctt atactacatt
     7381 aaaggtaaat acataattta tgtctatcta cttctaggaa ctattctaga cagtaaatat
     7441 aacaatattt tcagaaagga gatcaaaatg gaatgaaggt aaaaaaaatt atatatgtgc
     7501 ttaacatgtc aaaggaaggc agagacgtgt gatttgggtt gctgggaagg gggaaaaaat
     7561 cactgatatt ccaataaaaa catgtatcga cactgggtgg tagttttaca cttagttcca
     7621 aaataaatat actataggaa
//
