LOCUS       XM_002727893            5488 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus coiled-coil domain containing 14
            (Ccdc14), transcript variant X1, mRNA.
ACCESSION   XM_002727893
VERSION     XM_002727893.5
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051346.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Jan 16, 2024 this sequence was replaced by
            NM_001427244.1.
            
            On Jan 21, 2021 this sequence version replaced XM_002727893.4.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5488
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="11"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..5488
                     /gene="Ccdc14"
                     /note="coiled-coil domain containing 14; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 5 ESTs, 4 Proteins, and 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 89 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:288054"
                     /db_xref="RGD:1562189"
     CDS             29..2818
                     /gene="Ccdc14"
                     /codon_start=1
                     /product="coiled-coil domain-containing protein 14 isoform
                     X1"
                     /protein_id="XP_002727939.1"
                     /db_xref="GeneID:288054"
                     /db_xref="RGD:1562189"
                     /translation="MRRGVPQSPSRKRKLGGRDKGGRDVSAVNSFFLKYSFPYVWALL
                     RLREMVRSGSRPGQVIPSGRQPGSKLPNGKKGTHVRKVAHFNVDPACPAYSDSESQTD
                     TVQGLDSCASLLRDILKNEDSGSEVVYSENRSNSKPLEGRKNRSKKKGPEKHVPTVVR
                     KEILSSENKRWMPNETSTGSDIAQHWSVQDHYRMYSPIIYQALCEHVQTQMSLMNSFA
                     SKHGPNGRPAVCHTGSNSDSQAMSHSGFGWSSASVWPPQQPSCHLTVHSEVQTDDDNQ
                     FDSQGQTTPVRHRDAPRTLSSIHPGVAHGPPHSDGAAASKIQQLNLGSWVLPQQRAPK
                     EAELPKRFQTHVSLFPAHGKDALSDSQAHPSPSHLPPVFLATNEEKCAREQIGEATNE
                     GKYLSIHEQDAKLAKNVQQAENVSQTAEKVRIAKCLLGELKALTEEQEDSEVQRLLTE
                     VEACISGLSAVSGHINVEVEIALALQPLRSENAQLRRQLRILNQRLREQEKSTETPAN
                     LKLFSLRSLSLQNQLQESLKSQELLQSKNEELLKVIEDQREENRRFSTLFKDEEQALL
                     HSRQQFDMEMTRVKMELEEALANEKNSRFKLETAEKENQILGITLRQRDAEVARLREL
                     TRTLQNSMRKLLSDLHVDTARCKMGNSLTRSLLNVYDQQFQRDPAPPHISIMSYLNKL
                     ETNQSFIQSELPNNEETPESDSLCENVLPSQRPPHSDARAVDGGPAPGTVSAALVEDS
                     DTDCEAVTVVEDGCDVDSTFYIPFARSTSKKHSPPSKRLSPQAKVSAAASAGACASKK
                     ESKPCAPAVCPSRDKAEDAPGNLSGTYDTEDVQLLRKIREALGKIPAAAGHPKEQATH
                     RGPPAPLSPGVPVKGNIVADSSFLHSDLMSDWSISSFSTFTSRDEQDFRNGLAALDAN
                     IARLQKSLKTGLLEK"
ORIGIN      
        1 aaggaaaaac tttagtacca aaaagactat gaggcggggc gttccgcagt ctccttcccg
       61 gaagcggaag ctcggggggc gggacaaggg aggtcgggac gtctcggcgg ttaattcttt
      121 ttttctcaag tattcgtttc cctacgtctg ggctcttctg aggctgagag aaatggtcag
      181 gtctggatct cgaccgggcc aggtgatacc ttcaggaagg caacccggat cgaagttacc
      241 aaatggaaag aaagggaccc acgtgagaaa agtagcacat tttaacgtag atcctgcctg
      301 tcctgcttat tctgattcag aaagtcagac ggacactgtt cagggacttg acagttgtgc
      361 ttctttgctg cgggacattt tgaaaaatga agattcaggt tcagaagtag tatattcaga
      421 aaatagatcc aattctaaac ctttagaagg cagaaagaac agatctaaaa agaaaggacc
      481 tgaaaaacat gttcctacag tggtccggaa ggaaatatta tcatcagaaa ataagagatg
      541 gatgcctaat gaaacttcta ctggaagtga catagcgcag cattggtcag tacaagatca
      601 ttacagaatg tactcaccga taatatacca agccctctgt gagcatgtgc agactcaaat
      661 gtcactgatg aatagcttcg cttcaaaaca tggccccaat ggaaggcctg ctgtgtgcca
      721 tactgggtct aattcagact ctcaggcaat gtcacattct ggttttggct ggtcttccgc
      781 ttcggtctgg ccccctcagc agccatcctg ccatctaaca gtccactctg aagttcagac
      841 tgatgatgat aaccagtttg actcacaggg tcagacaacc cctgtgcggc accgtgatgc
      901 tcccaggact ttatccagca tccatcctgg agttgcacat ggccctcccc actctgatgg
      961 tgccgctgct tcaaagattc agcagctgaa tcttgggagt tgggttctgc cacaacagag
     1021 agctcctaag gaagcagagc taccgaagcg tttccaaaca cacgtgtctc tgtttccagc
     1081 tcatggaaaa gacgctctct cggacagtca ggcacaccca agtccctctc acttaccgcc
     1141 agtcttcttg gccactaatg aagagaaatg tgccagagaa caaattggag aggccacaaa
     1201 tgaaggaaag tatttaagca tccatgagca agatgcaaag ctcgccaaga atgtgcagca
     1261 ggcagaaaac gtgagccaga ctgctgagaa agtcagaatt gccaagtgct tgctgggaga
     1321 gctcaaggcc ctgaccgaag aacaagagga ctcagaagtt cagagattgc taacagaagt
     1381 agaggcgtgc atatctggac tttcagcagt gagtggccac ataaatgtgg aagttgaaat
     1441 agccctggcc ctgcagccgt tgagaagtga gaacgctcag ttgcggaggc aactgagaat
     1501 tttgaatcag cgcctccgag aacaagagaa gagtacagag acacctgcta acctcaaatt
     1561 gttttccctt cggtcgctgt cactgcagaa tcagctgcag gagtcgctga agagccagga
     1621 gttgctacag agtaaaaacg aagagctcct aaaagtgata gaagaccagc gagaggaaaa
     1681 cagaaggttc tccactttgt ttaaagacga agagcaagcc ctgcttcaca gcagacagca
     1741 gtttgacatg gagatgacca gggtgaagat ggagttggag gaagccttgg ccaatgagaa
     1801 gaactctcgg tttaagctcg agactgcaga aaaggaaaat cagatactgg gaataactct
     1861 ccgccagcgg gatgctgagg ttgcccgcct tagggaacta accagaactt tacagaacag
     1921 catgaggaag ctgctctcag atctccatgt ggacactgcc cgctgcaaga tggggaacag
     1981 cctcaccaga tcacttctga atgtctatga tcaacaattt caacgggacc cagcccctcc
     2041 tcacatctcc ataatgagct acctcaataa attagaaaca aatcagagct ttatacagtc
     2101 agaactgcct aataatgagg aaacccccga gtcagacagt ctctgtgaaa atgtgctgcc
     2161 ctcacaaaga cctcctcaca gtgacgctag ggcagtggat gggggccctg cccctggaac
     2221 tgtctctgct gctttggtgg aggattctga cacagactgt gaagccgtca ctgtagtaga
     2281 agatgggtgt gacgtggaca gtacatttta tattcccttt gcaagaagca cttctaaaaa
     2341 gcactcgcca ccttctaaga gactgtcccc ccaggcgaag gtgagcgctg ctgccagcgc
     2401 cggtgcctgt gcctccaaaa aagaaagtaa accgtgtgca cccgcagttt gtccctcacg
     2461 agacaaagcg gaagatgcac ctggaaatct ttctggcaca tacgacacag aggacgtgca
     2521 gctcctcagg aaaatcagag aagcacttgg taagatccct gctgctgctg ggcaccccaa
     2581 ggaacaggcc acccatcgtg gcccaccagc tccgctcagc cctggcgttc ctgtgaaggg
     2641 caacattgtc gctgacagca gctttctcca ttctgacttg atgtcagact ggagcatctc
     2701 ctcgttttca acattcacgt ctcgtgatga gcaggacttc agaaatggcc tggcagcgtt
     2761 agatgccaat attgctcggc tccagaagtc cttgaagact ggccttctgg agaaatgatt
     2821 ctgggaggaa actgattgag tccttttttt aaagtacaga acttgactac attcatagta
     2881 tattttgggt tttcttagag agaacatttt atattattaa ttatgtatga aataataaat
     2941 ggagtaaatt tactgttaag aatattttaa cacctgaaac ttacaaaaac aaattttctt
     3001 gaaaccaaca gtctgggaga agaaagccgt ggatcagaaa gtattgattt caaggcgctt
     3061 tacttgacag cttcggcttc acagagaatt cttcactgtg caatggctgg gtcggcggtg
     3121 cagccaccga gcatctctgt ctggaaggag agtacgaaag gatcagtact gtttaaatgt
     3181 tcctctctgc agtggaatgt tggtttcatg gtagtgttct tgtgtatggg aatactctgt
     3241 gttacgagct agtgctgcca atgacatgcg ctaacgtttc agagagagag aagaggcagg
     3301 tgcacccacc tcacacaaag cattgatttg tccagagaaa taccgatgat tgattaatac
     3361 atagttttta aaccttgggc attttattta tatttgtcct gaatgcatgt tttaagacct
     3421 ttaaaaaata aagtcagact gataaggtaa tgctaaataa ccaagtttta ccttagtaat
     3481 tttgtttttt agtaagaatt attgggtttt ccttaatgtc tttggaaatg atggagtttt
     3541 gcaaatctca gcactggtgg taattctgcc tttctgaccc agtctcctcc atggtttagc
     3601 tgagtgtgct gctctgtgat taacatgaac catgttgcac cagcagttct cacccacctg
     3661 ctgtcacctc tttctgtgta aacacaaatt aactcttaga ctctaagtcc cgcgccatta
     3721 gtaacttttg gtacatgtta cctgcctggc acagttgaat ttggttcttg gaaagcatct
     3781 ggcaatcgag tagtctgctg gtttcaaatt ttctcctgct tctacaacct ctgaaggacc
     3841 ctgctggact acttaacata tcctgacttt atggggaggg ttttttgttt gtttgctttt
     3901 tgtttgtttg ttttaggtct aaatgtaaaa tgaattataa actattttaa agacttgctc
     3961 attaacattt tcaatttact tccttctagt attcataaat gaattgttta cttattttga
     4021 gatatcaggt cactctttcc attttcgttc agaagcacaa actcataaag aagaaaaccg
     4081 ggtcgtctaa acaagaactt gtatagaagc taatcttata gaggaatttt ctcagttcag
     4141 attcctactt cccggccagg tgtggtaata cacactttaa ttccagtatg caggaggcag
     4201 aggcaggcag atctctgagc tcgaagccag cctggtctac aaagtgagtt ccaggactgc
     4261 cagggccata cagagaaatc ctatttaaaa aacaaaacaa aacaaaacaa aacaaaactg
     4321 ggcaaattcc ctcttcccag ataggtctgt ttatgctaca ttgacaaaac tacccagtat
     4381 cctgatctag tctgctacca agggggtcat aagaaccctg atgcatagct ggccggtcag
     4441 ttgtgggctt gtgactaaca tgtgaggcaa gtgtcagtct gttggcactg agaccacacc
     4501 tgtttgactc tacctttcag ggtgaccgtg tcttaaggga cttggattgg tgtttctgca
     4561 caaccagttg gttgctggtg aggtgaaatc ctagtgcatc ctggtatcat agaaatgaag
     4621 tgttgccaac ataattcttc ctgtatcttc agaataccac attaaaaagt cttaggaatt
     4681 tacttaggat tattttttca ttagtgtgta cacataagtg tgtgggcatg gatttaccgt
     4741 ggtgcatatc tgtaggtcag aggacaactc ttgggggtca gtctctccta cccccacatt
     4801 tgcttgtgtt tttgcgtgac cgttgatatg ggagtttctg cctccaggtt ccagccttga
     4861 gttcctgccc tgacttccct cggtgataag tgtgccctga gagttgtaag atgaaataaa
     4921 tcctttcctc ccaagatgcc tttggtcttg gtgttttatc acagtagaaa agtaactaag
     4981 tttgctagtg cagctcacag aactcaagaa aacatttacg gttttgtttt ttaaggatat
     5041 aaacagccag aagagattga taggccaatg cctggaaaag atgctaccta cctacagtct
     5101 ctgtcctcac cgaactgggc tcttctgtcc tctaggtgta tacggatttg ttcttgttca
     5161 gctcctgtca agtcacctac tctagctgcc taaaagttct ctctaccctg gcatcacaat
     5221 tgaatcatag acagctaggt atgtcagtgg ttctctgcct tcctgatgtt gtggcccttt
     5281 gatataattc cttgtgttgt ggtgacccca accataaaat tatttttatt gctgtttcat
     5341 aaatgtaatt ttgctattgt tataaattgt gagtattcat gttttctaat gatctgtggg
     5401 gactcctgtg aaagagtcag tcaactccca aaggggtttc gacccaaagt ttgagaactg
     5461 ctgatgtaaa taaatggttg gacaaaaa
//
