LOCUS       NM_001399577            3884 bp    mRNA    linear   ROD 31-MAR-2024
DEFINITION  Rattus norvegicus coiled-coil domain containing 136 (Ccdc136),
            mRNA.
ACCESSION   NM_001399577 XM_006236239
VERSION     NM_001399577.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 3884)
  AUTHORS   Geng,Q., Ni,L., Ouyang,B., Hu,Y., Zhao,Y. and Guo,J.
  TITLE     A Novel Testis-Specific Gene, Ccdc136, Is Required for Acrosome
            Formation and Fertilization in Mice
  JOURNAL   Reprod Sci 23 (10), 1387-1396 (2016)
   PUBMED   27076447
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000004.1.
            
            On Jan 12, 2022 this sequence version replaced XM_006236239.4.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on transcript alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26643299.18661.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760393, SAMEA5760433
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-155               JAXUCZ010000004.1  58963196-58963350
            156-263             JAXUCZ010000004.1  58964099-58964206
            264-518             JAXUCZ010000004.1  58965845-58966099
            519-593             JAXUCZ010000004.1  58966184-58966258
            594-914             JAXUCZ010000004.1  58972434-58972754
            915-1026            JAXUCZ010000004.1  58975134-58975245
            1027-1195           JAXUCZ010000004.1  58976004-58976172
            1196-1333           JAXUCZ010000004.1  58977143-58977280
            1334-1492           JAXUCZ010000004.1  58977608-58977766
            1493-1663           JAXUCZ010000004.1  58978248-58978418
            1664-1849           JAXUCZ010000004.1  58978786-58978971
            1850-2044           JAXUCZ010000004.1  58980648-58980842
            2045-2269           JAXUCZ010000004.1  58981289-58981513
            2270-2776           JAXUCZ010000004.1  58982893-58983399
            2777-2998           JAXUCZ010000004.1  58983760-58983981
            2999-3277           JAXUCZ010000004.1  58984887-58985165
            3278-3553           JAXUCZ010000004.1  58985787-58986062
            3554-3884           JAXUCZ010000004.1  58992632-58992962
FEATURES             Location/Qualifiers
     source          1..3884
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="4"
                     /map="4q22"
     gene            1..3884
                     /gene="Ccdc136"
                     /gene_synonym="RGD1564459"
                     /note="coiled-coil domain containing 136"
                     /db_xref="GeneID:362331"
                     /db_xref="RGD:1564459"
     exon            1..155
                     /gene="Ccdc136"
                     /gene_synonym="RGD1564459"
                     /inference="alignment:Splign:2.1.0"
     CDS             98..3661
                     /gene="Ccdc136"
                     /gene_synonym="RGD1564459"
                     /codon_start=1
                     /product="coiled-coil domain-containing protein 136"
                     /protein_id="NP_001386506.1"
                     /db_xref="GeneID:362331"
                     /db_xref="RGD:1564459"
                     /translation="MEAGGGAGAGAAGWSCPGPGPTVTTLGSYEVSEGCERKKGQRWG
                     SLERRGMQAMEGEVLLPALYEEEEEEEEEEEEEVEEEDQVQKEGSLGSLSVGKHRGLS
                     LTETELEELRAQVLQLVAELEETRELAGQHEDDCLELQGLLEDERLASAQQAEVFTKQ
                     IQQLQGELQHLREEISLLEHEKESELKEIEQELHLAQAEIHNLRQAAADSATEHESDI
                     ASLQDDLCRLQNELDDMERIRGDYEMEIASLRAEMELKASGPSDLSISDFSGIQDELH
                     QLRERYHFLNEEYQALRESNSSLTGQLAELESDRTRRATERWLESHMLKNMMSSESQT
                     SELDFPEPDPVMQLLRQQLLGAEEQMHDMQDKCKNLCCELEELQHHRRTSEEEQKRLQ
                     RELKCAQNEVLRFQTCHTTQNEELKSRLCALQQKYDTSQDEHSELLKVQMQLQSELQQ
                     LKLVRCTPVESQSEKELMCRLQKLQAQHQCSVNEKEQLLEVQHHLHDKLRCHESEMHR
                     LREMVDCLRERNEKNSGIHLQLQEMKGLYQCSRDELERQKHMYDQLEQDFMLCQQELT
                     ELKSSHSFCEDSGNRPNKCDALLARLTELQEKFKASQLEIGHLQMEQCELLEDQRRLQ
                     EEQGQLQEELHRLTFPQPKCGLLQKSQELLAKLQDLCEMQLLYQNMQDQQRKLIQNQE
                     CVLREQLEAHKHLRGFKESNFQEVLANPQDAQGPKSSSCENKFKVFMEQLQALQVLYD
                     TSQRQQEVLQQEHGRLMEERKRLQAELQLCMEEMQLLQTQSPTMKGNFDYCKKNTGST
                     ALSTESFHRSYDSTIDECEGYQKSYVSSQPSKETFLKSYDSNMSCSEAFQKSYCSSNT
                     TVAYKKSYISGSSCETLHKSYASSSTDEEPADPEDLEHFEETVAKVLTKLQAVKALYQ
                     VSQEEHCQLQERMSKLLAKQKELKEELEYCEKELKECMENFEKPATPQNDKCEIKELQ
                     TKLRELQLQYQASMDEQGRLLAVQEQLEGQLQCCQEELRQLKENRSSFSSEARGKHVL
                     KNMNKNANGVRDQVGKACSEDLENDFEDEKNLEVMLYYKASQKKLDELTKEEKEMDEL
                     RKKEKEKQAKKELCKLATKAADPGAEPESTEGEDENFEEYTEGEDESCETAEEGNPLK
                     LSESKKNMFGMWKPMVFLAIAAVALYVLPNMRPQEPEFYMN"
     exon            156..263
                     /gene="Ccdc136"
                     /gene_synonym="RGD1564459"
                     /inference="alignment:Splign:2.1.0"
     exon            264..518
                     /gene="Ccdc136"
                     /gene_synonym="RGD1564459"
                     /inference="alignment:Splign:2.1.0"
     exon            519..593
                     /gene="Ccdc136"
                     /gene_synonym="RGD1564459"
                     /inference="alignment:Splign:2.1.0"
     exon            594..914
                     /gene="Ccdc136"
                     /gene_synonym="RGD1564459"
                     /inference="alignment:Splign:2.1.0"
     exon            915..1026
                     /gene="Ccdc136"
                     /gene_synonym="RGD1564459"
                     /inference="alignment:Splign:2.1.0"
     exon            1027..1195
                     /gene="Ccdc136"
                     /gene_synonym="RGD1564459"
                     /inference="alignment:Splign:2.1.0"
     exon            1196..1333
                     /gene="Ccdc136"
                     /gene_synonym="RGD1564459"
                     /inference="alignment:Splign:2.1.0"
     exon            1334..1492
                     /gene="Ccdc136"
                     /gene_synonym="RGD1564459"
                     /inference="alignment:Splign:2.1.0"
     exon            1493..1663
                     /gene="Ccdc136"
                     /gene_synonym="RGD1564459"
                     /inference="alignment:Splign:2.1.0"
     exon            1664..1849
                     /gene="Ccdc136"
                     /gene_synonym="RGD1564459"
                     /inference="alignment:Splign:2.1.0"
     exon            1850..2044
                     /gene="Ccdc136"
                     /gene_synonym="RGD1564459"
                     /inference="alignment:Splign:2.1.0"
     exon            2045..2269
                     /gene="Ccdc136"
                     /gene_synonym="RGD1564459"
                     /inference="alignment:Splign:2.1.0"
     exon            2270..2776
                     /gene="Ccdc136"
                     /gene_synonym="RGD1564459"
                     /inference="alignment:Splign:2.1.0"
     exon            2777..2998
                     /gene="Ccdc136"
                     /gene_synonym="RGD1564459"
                     /inference="alignment:Splign:2.1.0"
     exon            2999..3277
                     /gene="Ccdc136"
                     /gene_synonym="RGD1564459"
                     /inference="alignment:Splign:2.1.0"
     exon            3278..3553
                     /gene="Ccdc136"
                     /gene_synonym="RGD1564459"
                     /inference="alignment:Splign:2.1.0"
     exon            3554..3884
                     /gene="Ccdc136"
                     /gene_synonym="RGD1564459"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 ggcccgccct ctctcttcgt tgcgcaccgg gctcccggtc cccggcccgg aggctgcggc
       61 ttctgctcgg gaggcggcgg cagcgacggg agcggccatg gaggcaggcg gcggggccgg
      121 cgcgggagcc gcgggctgga gctgccctgg cccaggaccc acagtaacta ctttaggctc
      181 ttatgaggta tctgagggtt gtgagaggaa gaaaggccaa cgctgggggt ccctggagcg
      241 ccgcgggatg caagctatgg agggggaggt gttacttcca gctctgtatg aggaggagga
      301 ggaggaagaa gaggaagaag aggaagaggt tgaagaagaa gatcaagtac agaaagaagg
      361 cagtttgggc tccctgtcag tgggcaagca tcggggcctg agcctcacag agacagagct
      421 ggaggagctg agggctcagg tgctccagct ggtggcagag ctggaggaga cccgtgagct
      481 tgctgggcag catgaggatg actgcctgga gcttcagggg ctcctggagg atgagcggct
      541 ggccagtgcc cagcaggccg aagtattcac caaacagatc cagcagctcc aaggtgagct
      601 gcaacatcta cgggaggaga tttccctgtt agagcatgag aaagaaagtg aacttaagga
      661 aatagagcag gagttgcatt tggcccaggc agagatccat aatctgcggc aagctgcagc
      721 agactctgca actgaacatg agagtgacat agcgtccttg caggacgacc tctgccggtt
      781 gcagaatgag ctcgatgaca tggaacgcat tcgcggggat tatgagatgg aaattgcctc
      841 actccgtgca gagatggaat tgaaggcttc tggaccatct gatttaagta tttcagactt
      901 ctctgggata caagatgaac tgcaccaact tcgggagcgc taccactttc tgaacgagga
      961 ataccaggcc ttgcgggaaa gcaacagcag cctcacaggg cagctcgctg agttggagag
     1021 cgataggaca cgaagagcaa cagaacgatg gttagaatct cacatgctaa agaatatgat
     1081 gtcctcagag tctcagactt cagaactgga tttcccagag cctgaccctg tgatgcagct
     1141 tctgcgccag cagctgctgg gagctgagga acagatgcac gacatgcagg acaagtgtaa
     1201 gaacttgtgc tgtgaattgg aagagctgca gcatcaccgc agaaccagtg aggaggagca
     1261 gaagcggctg cagagggagc tcaagtgtgc ccagaacgag gtgctccggt ttcagacctg
     1321 ccacaccacc cagaatgagg aactgaagag caggctctgt gccctgcagc aaaagtatga
     1381 tactagccag gatgaacaca gtgagcttct gaaggtgcag atgcagcttc agtctgagct
     1441 ccagcagctc aaactcgtca gatgcacacc tgtagagagc cagagtgaga aggagttaat
     1501 gtgccggctc cagaagctgc aggcccagca ccagtgcagt gtgaatgaga aggaacagct
     1561 tctagaagtc cagcatcacc tgcacgacaa gctgcggtgc catgagtcag agatgcatcg
     1621 tctccgagag atggtggact gcttgcgaga gagaaatgag aagaattcag ggatacacct
     1681 ccagctacag gagatgaagg gattgtatca gtgcagcagg gatgagctgg aacggcagaa
     1741 gcacatgtat gaccagctgg agcaggactt catgctctgc cagcaggagc tgacagagct
     1801 caagtccagc cattcctttt gtgaagacag tggaaaccgc cccaacaagt gtgatgcact
     1861 gctggccaga ctgacagaac tgcaggagaa gttcaaggcc agccagctgg agattgggca
     1921 cctgcagatg gagcagtgtg agctcctgga ggatcagagg aggctgcagg aggagcaggg
     1981 ccagctgcag gaggagctac ataggctcac attcccacag cccaaatgtg gtctcttgca
     2041 gaagagtcag gagctgcttg caaagttgca agacctgtgt gaaatgcagc tgctctacca
     2101 aaacatgcag gaccaacaga ggaaactgat acagaaccag gagtgtgtac taagggagca
     2161 gttagaggca cacaaacatc ttcgaggttt caaagagtct aatttccagg aagtgttggc
     2221 gaaccctcag gatgctcaag ggcctaagtc ctccagttgt gagaataagt tcaaggtgtt
     2281 catggagcag ctgcaggctc tgcaggtgct gtatgatacc agtcagaggc aacaggaggt
     2341 actgcagcag gagcatgggc ggctcatgga ggagcggaag aggctgcagg ctgagctaca
     2401 gctctgcatg gaagaaatgc agctactcca gactcagtcc cccaccatga aaggcaactt
     2461 tgactactgc aagaagaaca caggcagcac ggctctcagc actgagagct tccacaggag
     2521 ttatgacagt accattgatg aatgtgaagg ctatcagaag agttacgtga gctcccaacc
     2581 cagcaaggag accttcctca aaagctatga cagtaacatg agttgcagcg aggcctttca
     2641 gaagagctac tgctccagca acacaactgt tgcctataag aagagttata tcagtggtag
     2701 tagttgtgaa acccttcaca agagttatgc cagcagcagt actgatgagg aaccagctga
     2761 tcctgaagac ttggagcact ttgaggaaac agtggccaag gtgctgacca agttgcaggc
     2821 agtgaaggcc ctgtaccaag tgagccagga agagcactgc cagctgcagg agcggatgag
     2881 caagctgctg gccaagcaga aagagctgaa ggaggagctg gagtactgtg agaaggagtt
     2941 gaaggagtgc atggagaact ttgaaaagcc ggcaactccc cagaatgaca aatgtgagat
     3001 caaagagctg caaaccaagc tgcgagagct gcagctgcaa taccaggcta gcatggatga
     3061 gcaggggcgg cttctggcgg tgcaggagca gctggaagga cagctgcagt gctgccagga
     3121 agaactccgc cagctcaaag aaaacaggtc ctcctttagc tcagaagcca ggggcaagca
     3181 tgtccttaag aatatgaaca agaatgccaa tggagttaga gatcaggtgg gcaaggcttg
     3241 ctcagaggac ttggagaacg attttgagga tgaaaagaat ctggaggtta tgctatacta
     3301 caaggccagc cagaagaaat tagatgagct aacgaaagag gagaaagaga tggacgagtt
     3361 gagaaagaaa gaaaaagaaa agcaagccaa gaaagaactg tgtaaactag ctacgaaggc
     3421 cgcagaccct ggtgcagagc ctgagtcaac agagggtgaa gatgaaaact ttgaagagta
     3481 cacagaaggg gaggatgagt cttgtgagac tgctgaggaa ggcaaccccc ttaagctttc
     3541 tgagagcaaa aagaacatgt ttgggatgtg gaagcctatg gtattcttgg ctattgcagc
     3601 agtagctctg tatgtgttac ccaatatgcg accgcaggaa ccagaattct acatgaattg
     3661 atggcagacc tggaccagcc cagagggcag atccccagag gctaccaccc tcacctttgg
     3721 gcagagtaca ctgtgccaga accccccacc ccatcagtgt ttctccatct cctttgcctc
     3781 agtattcaag actgaaaagg cttatgggag ttgctggctc tcaatctcct gccttgtgta
     3841 agaacctggg ttccttgtaa ttaaatgtca gcctgattac atga
//
