LOCUS       XM_039082753            8271 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus coiled-coil domain containing 13
            (Ccdc13), transcript variant X2, mRNA.
ACCESSION   XM_039082753
VERSION     XM_039082753.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051343.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039082753.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8271
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="8"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..8271
                     /gene="Ccdc13"
                     /note="coiled-coil domain containing 13; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 13 ESTs, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 26 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:686091"
                     /db_xref="RGD:1586605"
     CDS             2641..4776
                     /gene="Ccdc13"
                     /codon_start=1
                     /product="coiled-coil domain-containing protein 13 isoform
                     X1"
                     /protein_id="XP_038938681.1"
                     /db_xref="GeneID:686091"
                     /db_xref="RGD:1586605"
                     /translation="MAADESSADTLRLQFKAMQELQHRRLQKQMERKREKELSCQSKA
                     DDQEGLMVIPDGLSLLDTEEQNLKNIFEKRVLEDEVQQLRSELRETVDENGRLYKLLK
                     ERDFEIKHLKKKIEEDRFAFTGATGMAGDLVATKIVELSKKNRGLMAESESAKVRIKQ
                     LTNRIQELEHELQMASAKPPAKGATDAGTKPLKTQTGDKAVQPETPEVKALQDRLAAT
                     NLKMSDLRNQIQSAKQELRVAQKVLANEVGEDVNIQQLLASPGTWRGRAQQILVLQSK
                     VRDLEKQLGQRQNKIAGSPSSELPLNSDPRKLTAQEKNLLRIRSLERDKQESWEKLTS
                     ERDTLQTELEEQKKKFEGIRSRNKVLSSEVKTLRSQMVTLVEKGRHDDELIDALMDQL
                     KQLQDILGSLSVQEESRRTSQQHLDQKVNSEAQRSSSLVAQLRAMVADREAKVRQLEL
                     EIGQLSVQYLHGKGGGEGASPTDARFPEDQTPITNSPASAGDHVGRLGSSRSVTSLGH
                     TLVESALTRPSLPSPHGTSPRFSDSPEQKGWQAQAAEMKALWQAAEVERDRLNEFVTV
                     LQKRVEESSSKLLEAERRLQEERQRAVLLEQHLEKLRLEPSRALVSQKAPKNKPGPPA
                     ASTKPNSTGSAKKDSSSTQLSDMPMESQIEELNARLAIQMEENGVLRDALGSALRGKE
                     EDFRMYHQTLGQVKGVFLQALRQQKANKQ"
ORIGIN      
        1 tgcagtggag agggcaggtg tagtcagctg gttcacctgg gcaagtgttt gtaagttcag
       61 agtgagtttg atacacatgt ctgaggcctc ttgtagctga cagagctgtg ctttctgggt
      121 gagagctgct aggcagagca tttaaagcta gacagaaaga ctgtaaactc accaagctgt
      181 ggttagtctg gattctctct tactttgcct agacctgtgt ttctaagggc tgggatggac
      241 ttgattgttt gtagatcctt ctggttctgc ccagggcttt cacctctgcc ggcccccccc
      301 ccccccacac acacacatcc tgagagatat cagcacatac atgtcaccct gttctgaagc
      361 tctgcagatt tcttactttt tttttaagtc attggtatga aggtttaaag atatctataa
      421 ttttctcagt gctctggact tgacagtata acaggagcac acggacttgt gtaggccgat
      481 gcggtacctc atgctagcct tgtcccaaaa accacagcca ttgatgagtt gtctcttagc
      541 ttttggcttt gcccggaata tttttgctgg attcaagttc aatttctcag ttttccaaat
      601 gacctattgt aaaatgtcaa ttgaaaaaaa aaaagctttc tcgataatta caaagtccca
      661 tggctcttaa atattaacct cagcttaatc tagacctctc taaagtgggc cccaaatcac
      721 agtggagctg gcaggctgct tgggcctctg gtggagtaaa gtgaggcaca gcggagttca
      781 cactggtcct tacctacaat tgctgtcacc cataaagtgc tggcttagct gcctccgggg
      841 cctgttctgg gctgtgtcac ttgcccatgg ctctgatcat gtaccgggcc tgaaacatca
      901 ggattcactg agctcacagt tgagggtacg cagtgtgtgg ccattgtgtc aggatagcac
      961 tgggaagagc tccaggctat gagtgagctg gctaaggtac aaagctgaga gccagacacc
     1021 agccacaggc ccagctaaga ctcgaaaccc tgctctgtgt cccaaagttc ataatctctg
     1081 cttcagacac ttgaggctgt aagggacatt ttatatccaa accttgcctt gtgcctgaca
     1141 caggagcaat cccaggccca tcagggtgct ttgtagttct gaaaaagcgt cacaggatga
     1201 ctgatagcat ataaagcatg tacatctgtg taccatgtgt gtgtgcatgt gtgtgtaagc
     1261 atgtgcatgc gtgtgatctg aggattgtgt ggcctgagct ctcgtgtatc tctgaagctg
     1321 ggtgaagctt ctgtggcaag tccattctaa cttctccgca gtatttcttc ttaactaaca
     1381 catggtttta ggttttcttt cagttccaga tttcattctt atatcctttt tctttttctc
     1441 tgttctttga gattcttttt aatcttgttt gtttgccatt agagagcaag gtctgtactg
     1501 gatttggagg ttgctttgtg gcctgcagtc cttgagggct taaaatgagt gagggggaga
     1561 aggttggggt gttcagtccc taaagtacct gcttgtaaac acaaagacag actcagtccc
     1621 cagaacccat gtaaaaatgc tgggcatggt catgtgctgt tgtaaagatg gagacaggca
     1681 gatccttggg ccatctgacc acccagccta gcataattgg tgtcttcaca catgaacaga
     1741 ctcacatgac atatattcat acacacatgt acatacacgg acatgttatc ctacaagggc
     1801 atatagaaat tctaaatctt aatttaaaat ggaggctggt gtccatccat gctttaggtg
     1861 aacttggctt ctaggctagt gagacactct gtcccaaaga gtgtagatgg cattcctgag
     1921 cgtaacctcc acgggtgttc tctcagctcc acacacacac acacacacac acacacacac
     1981 acacacacac agagtgtggt gctggggata gaaccagggt ctcatacaat cctaccgtac
     2041 tctaccacag agctacttct ccaatcctta gtctcttaga acagggtttc cttatgtagc
     2101 tcaggctggc ttagaagtca ttgtagagcc caaactggac ttggatgtgt gatcctccta
     2161 cctgtgcctc caaggtgctg ggactgccgt acattcatcc ccgaagcctt ctaatacgta
     2221 gtgctgcagc ctgtgtcacc cagtattcaa tagaggcagg aggataagga gttcaaggtc
     2281 atccttggct acagagggag ttcgaggcca gtctgggatg ccagagatgc tatctttaaa
     2341 aacaaaagca aacaaaccaa tcccccaaat ccttaaataa aatatactac ggaagagtaa
     2401 aggtttcagg ggcactttgc cttctcatgc ctagctggtg tgtgcagttc cataggtctt
     2461 ccctggcgcc tccgcactgt cagcttagat ctttaagggc tctctcggcc cccgtacacg
     2521 cgcgcgaccg tgctggtttc cctggtgata gttgccaagg cagcacatgc cggcgtcggg
     2581 aagggcggag gaagcgcccg ccgccctgaa gacagacccc gaagcgcggc cgcgggcaag
     2641 atggcggctg atgaaagctc tgcagacact ctgcgactcc agttcaaggc catgcaggag
     2701 ctgcagcacc gacggttaca gaagcagatg gagagaaaga gagagaaaga gctgagctgt
     2761 caaagcaaag ctgatgacca agaagggctc atggtgattc cggatggcct cagcctcctc
     2821 gacacagagg agcagaacct aaaaaacatc tttgagaaga gggtgctgga agatgaagtc
     2881 cagcagcttc gtagtgagct ccgggagaca gtcgatgaga acgggcgact gtataagctg
     2941 ctgaaggaga gggactttga gatcaaacac ctcaagaaga aaatcgaaga ggacagattt
     3001 gccttcacag gggcgactgg gatggctgga gacctagttg ccaccaaaat cgttgagctg
     3061 tccaaaaaga accggggtct gatggcagag tcagagagtg caaaggtcag gataaagcag
     3121 ctgaccaatc gcatccagga gctggagcac gaactacaga tggcatcagc caagccacca
     3181 gccaaggggg ccactgatgc aggcactaaa cccctgaaga cccagacggg ggacaaagcc
     3241 gtgcagccgg agaccccaga ggttaaagct ctgcaggaca ggctggcagc caccaacctg
     3301 aagatgagtg acctgcgcaa ccagatccag tctgccaagc aggagctccg tgtggcccag
     3361 aaggttctgg ccaatgaagt tggggaagat gtaaatatcc agcagctcct ggcctcacca
     3421 gggacctgga ggggaagggc tcaacaaatt ctagttttgc agagcaaggt ccgagatctt
     3481 gagaagcaac tgggccagcg tcagaacaag attgcgggct caccgagctc tgagcttcct
     3541 ctcaattcag acccaaggaa gctgaccgca caggagaaaa acctcctgag gatccgcagc
     3601 ctggagaggg acaagcagga gagctgggag aaattaacca gtgagcggga caccctccag
     3661 acagagctgg aggagcagaa aaagaagttt gagggcattc ggtctcgcaa caaggtgctg
     3721 tccagcgagg tgaagaccct caggagccag atggtgaccc tggtggagaa gggcagacat
     3781 gacgacgagc tgatcgacgc tcttatggac cagctaaagc agctgcagga cattctgggc
     3841 agcctgagtg tgcaggagga atcgagacgc acgtctcagc agcacctgga ccagaaggtc
     3901 aacagtgagg cccagagaag cagcagcctt gtggcccagc tgcgggccat ggtggctgat
     3961 cgtgaggcca aggtgcggca gctggagctg gagattgggc aactcagtgt acagtatctt
     4021 cacgggaaag gagggggtga gggggccagc cccaccgatg ccaggttccc tgaggaccag
     4081 accccgataa ccaactcccc agcctcggca ggcgaccatg ttggcaggct cggctcttcc
     4141 cgctcggtga ccagcctggg ccatacactc gtggaatctg ctctcacaag gccatccctg
     4201 cctagtcccc atgggacctc gcccaggttc tcagactccc cagaacaaaa aggctggcag
     4261 gcacaagctg cagaaatgaa ggccctttgg caggctgctg aggtggagcg ggaccggctc
     4321 aatgagtttg tcactgtgct gcagaagcgg gtggaggaga gcagcagcaa gctgctggaa
     4381 gccgagcgaa ggctgcagga ggagcgccag cgagccgtgc tgctggagca gcacctggag
     4441 aagctgcgcc tggagccgtc gagggccttg gtgtcccaga aagcccctaa gaacaagcca
     4501 gggcctcctg ctgccagcac caagcccaac tcaactggaa gcgccaagaa agactcgtcc
     4561 tccactcagc tctctgatat gcctatggaa tcacagatag aggagctgaa tgccaggctg
     4621 gccatccaga tggaagagaa cggagtactg agagacgccc tgggcagtgc cctgcgaggg
     4681 aaggaggagg acttccgcat gtaccaccag accctgggcc aggtgaaggg agtcttcctg
     4741 caggcgctac ggcagcagaa agccaacaaa cagtagagca gagctcttag ctcaactcct
     4801 agaggacctc aggttcaggc agcaccctct cagctcctcc cagaatcggc tctgtatcct
     4861 agcagagcag acaagcggag gatacctgag caggagtggt ggccagccat tcctggctgg
     4921 tgcgtttcct cgagcaggtg ctgctgtcct tgccctaggg catctccagg gccctgggat
     4981 ctacgggctc tccacacata gctgagcccc ttggtgcttc ctcttgcggc atccacctgg
     5041 agccatccag ccttcccctg caatccctca ctcgggccct agcacccacc tggccatcct
     5101 gctgctgtgc ccagcctctc tgtgtactta ccgcataggg cagagccttg ggcttggaat
     5161 aagaagttac tttcagtcac tacagctctg gtggaatgtg ttcctgcccc tgacagagga
     5221 acctggtctg tgataggtag ggctttacag gtgtggtcca ggcctccaaa tagaagctgg
     5281 tggtcctgag tccaaagcta gggtctccag cagagtgaat gcccagagct ctgatggccc
     5341 caaggccaca cagctcaacc cattactgct cccagaggca taggtgctag agtcagaagg
     5401 caatctaggc aggcccgggc atggggtgca caggtaaggc agtgggtctt ggtacgtggc
     5461 agtgtgtctt tgttgcagag tgctgcagga gcagcccaga acacccttat ctcaggggct
     5521 gtaacagtgt cataggcaga cccagggaag gccacccaaa gctctcacag gcacggcagt
     5581 cgtgcatgct cacacacggg cactgaacat aggggtaggc acatgcagct ccatggctgt
     5641 caacacattc cctcccatga gacacaacca tgtgtgtggc ttgtagcact gtgacagcac
     5701 tctctggaaa gcctgtgtgc tcagcccatt cttgggccac ccaaggaatc ctgaaatctc
     5761 acaactggtg caactaaggc cattaggatg cggtggcagt tttagtgtca tcccaagagt
     5821 cttagggagg aagggttctc ccctggtttc tcatgcaagt agcaggcaga ggggacagga
     5881 atgtttgtgc tgggagggga cagcatgtga caataagaag ctggagagat gagcaccttc
     5941 tgcaggcact gagaggagtc tggacatgtg ggggtgcagg caccaggcct cagcagagcc
     6001 tactgagtgc gaggcaggca aggactagcc agcctccctt agaggaatgc aggtctgctg
     6061 tggcccctct cctgggcaac tgaaggcagg agtcctggtt tgtgcagcct gaaccttagc
     6121 tgggagccac atagcctcat tccactcaaa aggagcatgc atggctctgg gcagattttt
     6181 taatctctct acctcaatct cacctacctt catctgtgaa atgggacagt actagaaacc
     6241 ttgcttggag ggccattcac agagtaagac atttagctga tgacttctgt gcaaggacaa
     6301 gtatcaatag actggtttca gccatgccag tgaaagagag ggaggggaag agtcctgctg
     6361 ccaggtgcca cagtggcttc catttgtacc ctgtggaggg agctggcatc ttacagaggt
     6421 ttgtctgcat gggcagtcct gacatatgcc agctcctgcg ggcactggac ttaaaggcca
     6481 gtgagtagag tctataacac ctccaggcaa cctcaaacaa tttgcctggg gctttgtgct
     6541 agggcccatc cccccacctc tgctggctga ggtgaccaga ttcctagggt ccctcactgg
     6601 agctccctca gcactcactg agctaggaca ttcaacgtgt gtggagcagc aaccagcgca
     6661 cagtaagcac tcagtaaatg cccagccttt gtggtctccc tcttaagtca gcacacactt
     6721 gctgagcatc ctctccagac cctgaggtga ggcagacaag ctccctgtgc accagctgaa
     6781 cgaggctgca agctgcgtac agctgaccca agctgcgtac agctgaccca agctgcatac
     6841 agctgaccca agcaaactcc actgttaccc aggccctttc cccatcccca gagtccagca
     6901 caaggtggct tccagtgcga gtatcccaaa gcagcccatc tcacatcaag tctctgtgag
     6961 gagccaatag ctcccttcca catgccagtg agtcttgcca cacgcagtct ctgctgctgt
     7021 tcctgagcct ccatatgcgt gcagctcacc tcacacttct acactgcata gcatgcagac
     7081 agtcatcata ggcagacacc acccagcatg cactgctctg cacatccagg acacttgccc
     7141 gcactttaag aagcatgagt tgaatagcct ggggctttcc ctctttaact ttctcacgga
     7201 gccttgaggc atcaggaagt agctctcagt cccatgcagg tctcagccca gtcagcttcc
     7261 agtcccttgt ttgatgggcc agtgccccac cctacagccc ctggcaccag tggaggggct
     7321 catccagtct ctacccttct gcctttgcat aggtcaccat cctgcatgct gcggtgccag
     7381 ggtctccagg gagagtacca ctgccgtgtg ggccctgcct cagtgtctgg ctccctagca
     7441 cctctgtaag caatgaattg tgcctacagg gtgatcactg gatccctcaa gagcacagaa
     7501 aacccagtta acaagtgaaa atcagaggcc ccaaaacagt ggcttcaact tttcagcctt
     7561 agcacctcct gagggcacca tgctgtgtga cacttctcac tgggagatac aaacacatgt
     7621 ctactcaccc cagataggga actgaccaaa gtaatgacac catcaaagtc caacttggta
     7681 aagcagtgag tttttattgg ggtcgcttac aggaatatgg gtaaggtgtt acaggagcac
     7741 aggtgactca gtgacagctg catcaccaaa gcccatccca gcacagtggc aactcacaaa
     7801 gctgggagcc tggagcacac tgcacagcct gcaggcatct cagcaggttg gagtttccct
     7861 tccaggtggc tcagttgacc taagtccctt ccaggtatct tggtgcttct tctcagagct
     7921 tctcccgcag tccttacagt tggggagggt gggcctagtg tatctggtca gtttcaggaa
     7981 ctcattgaca cttctgagtt gtctacttcc ttagtcatag aagtttcctt ccctgatgac
     8041 aaaatgtctc atctcagagg acactgctac acaacacacc aaatgcatgg cctgcctacg
     8101 gtggcctcac ctactctgct gtgaatagac tgagttctca ccctgtggtg cagactcttc
     8161 cagaggcttc tggagctgac cttaactgtt ccaccttatg cctcagtttt ctttccagct
     8221 gaagacggtc cttgtgggtt gtggtgacat taaaaagagt tattctgcat a
//
