LOCUS       NM_001024740            1991 bp    mRNA    linear   ROD 24-JUN-2024
DEFINITION  Rattus norvegicus coiled-coil domain containing 116 (Ccdc116),
            mRNA.
ACCESSION   NM_001024740 XM_237828
VERSION     NM_001024740.1
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1991)
  AUTHORS   Wang,Y., Wu,W., Zhu,M., Wang,C., Shen,W., Cheng,Y., Geng,L., Li,Z.,
            Zhang,J., Dai,J., Ma,H., Chen,L., Hu,Z., Jin,G. and Shen,H.
  TITLE     Integrating expression-related SNPs into genome-wide gene- and
            pathway-based analyses identified novel lung cancer susceptibility
            genes
  JOURNAL   Int J Cancer 142 (8), 1602-1610 (2018)
   PUBMED   29193083
REFERENCE   2  (bases 1 to 1991)
  AUTHORS   Firat-Karalar,E.N., Sante,J., Elliott,S. and Stearns,T.
  TITLE     Proteomic analysis of mammalian sperm cells identifies new
            components of the centrosome
  JOURNAL   J Cell Sci 127 (Pt 19), 4128-4133 (2014)
   PUBMED   25074808
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from BC097459.1.
            
            On Jun 10, 2005 this sequence version replaced XM_237828.3.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC097459.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760389
                                           [ECO:0000348]
            ##Evidence-Data-END##
FEATURES             Location/Qualifiers
     source          1..1991
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="11"
                     /map="11q23"
     gene            1..1991
                     /gene="Ccdc116"
                     /gene_synonym="Sdf2l1"
                     /note="coiled-coil domain containing 116"
                     /db_xref="GeneID:287936"
                     /db_xref="RGD:1310080"
     exon            1..110
                     /gene="Ccdc116"
                     /gene_synonym="Sdf2l1"
                     /inference="alignment:Splign:2.1.0"
     exon            111..250
                     /gene="Ccdc116"
                     /gene_synonym="Sdf2l1"
                     /inference="alignment:Splign:2.1.0"
     CDS             179..1801
                     /gene="Ccdc116"
                     /gene_synonym="Sdf2l1"
                     /note="stromal cell-derived factor 2-like 1"
                     /codon_start=1
                     /product="coiled-coil domain-containing protein 116"
                     /protein_id="NP_001019911.1"
                     /db_xref="GeneID:287936"
                     /db_xref="RGD:1310080"
                     /translation="MARCRHHSGYLADDEAAHGTYVARLPKKHLLPEMRPTCKLGRVP
                     HLPSMNRYSERQGHQQNLRRPRAFGGFLDFLTEGQVLDSLQTVVEQATECVATMKTEA
                     GVPLVDVQDRVEVPNSRHRSRGRPSINTVHRHRARPTLCAGHPNNYPSCSSSMSDSHS
                     SVTAGWLGSRSQDSDLGARGVGSLPPMRDKLLLEKNLKRLLRLESKGKVLNQHCSQRD
                     SLLWDSLGSQSSSQPTREQPLSWFSGLLASTSVTPETSELGLGEQEMIFLKQELNKEI
                     KSLLNQPTSFNLPTYCPLREPHRTLDFLSEHHLFPALQRVVSQAVDKLSHACRHNGFP
                     LFPVTSELSPVFPGNSDLQPSSKASLPTDREARGETCYSPTSASSPKTSHRKSKDRRG
                     SPSNAVQMATRFRLKVTPTEVSNVPIPSSQCMLKSPNSDLKLQKQTTASNHNHIPQPR
                     HGLHLTLPAPGITVEVASCQGQLRGQVQHSLATPCHLHSHFPFPVFSPFLPLGKSFST
                     SPPTLCPEVSSRAGLEVLEGHLKGRGCFTHHF"
     exon            251..799
                     /gene="Ccdc116"
                     /gene_synonym="Sdf2l1"
                     /inference="alignment:Splign:2.1.0"
     exon            800..1964
                     /gene="Ccdc116"
                     /gene_synonym="Sdf2l1"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gcaggttggg ggctccagga tgcctcaggt ctgaaagaaa gaagtctgga cacacatttg
       61 gacccagaca cagttgcaaa caaaaggcag tgacttggga atgtccacag agaggagtct
      121 gcatctgtgc tgtaggacct gaagaaggaa gcagaaaaca aatttaatta tccacatcat
      181 ggcaaggtgc cgccaccact caggttatct ggctgacgac gaggctgctc acggcaccta
      241 tgtggctcgg ctgcccaaga agcatctgtt gccagagatg aggccaactt gcaagcttgg
      301 gcgtgtacca cacctaccat caatgaaccg atactcagag cgccagggcc accagcaaaa
      361 ccttaggcgc cctcgggcat ttggtggctt cctggatttc ctcacggagg gtcaggtact
      421 ggacagcttg cagacagtcg tggagcaggc aacagaatgt gtggctacca tgaagacaga
      481 ggctggagtg ccactggtgg atgtacaaga ccgagtggag gtgccaaata gtaggcatcg
      541 ttctcgaggc agacccagca tcaacactgt gcatcggcac cgtgctcggc ccacgctgtg
      601 tgctggacac ccaaacaatt acccatcttg ctccagctcc atgtctgact cccatagcag
      661 cgtcacagct ggatggctgg ggtcccgcag ccaagacagt gacctgggtg ccagaggcgt
      721 aggctcattg ccacccatga gggacaaact cctgcttgag aaaaacctca agaggctgct
      781 acgactggaa agcaaaggga aagttctgaa tcaacactgc tcccagaggg attccctgct
      841 atgggactca ctgggcagcc agagcagcag tcagccgacc cgggaacagc ccctgtcttg
      901 gttctctggg cttctggcct ccacttcagt cacccctgaa acttcagagt tgggactcgg
      961 agaacaagag atgattttcc tcaaacaaga attaaacaag gagataaagt cactgctgaa
     1021 ccagccaacc tccttcaacc tgcctaccta ttgtccactc agggaacccc atcgtaccct
     1081 ggatttcctg tctgagcacc acctctttcc agccctgcag cgtgtggtca gccaggctgt
     1141 agacaagctg agccatgcct gccgccacaa tggcttcccc ctcttccctg ttacctcaga
     1201 gctgtctcca gtgtttcctg ggaactccga tcttcaaccc agctctaagg cttccttacc
     1261 caccgacagg gaggctaggg gagagacttg ttattctccc acctcggcct ccagccctaa
     1321 gacatctcac agaaaaagca aggacagaag gggctcccca tctaatgcag tccagatggc
     1381 taccagattc aggctcaagg tgacacctac agaagtctct aatgtcccta tcccctcatc
     1441 ccagtgcatg ctgaagtctc ctaactctga cctcaaattg cagaaacaaa ctacagcctc
     1501 aaaccacaac catatacctc agccccgcca tggcctgcac ctcaccctgc ctgcccctgg
     1561 gatcacagtg gaggtggcct cctgccaggg ccaactcagg ggccaggtcc agcatagtct
     1621 tgccactccc tgccatctcc actcccattt ccctttccct gtgttctccc cattccttcc
     1681 cctgggaaaa agcttttcca cttcccctcc tacactgtgt cctgaggtgt cctccagagc
     1741 agggctggag gtcttggagg gacatttgaa gggaaggggc tgcttcaccc atcacttcta
     1801 gtagccactg ttactggcaa ggtgcccaag gacaagatct cttgccctgc actgtggaac
     1861 tcctccgagg tagatataag ctgcctgggg atcaggtgtc ctagtccatc tatttccagt
     1921 gtccagatgt tgtcaaagat taataaaggc tattttttac cctgaaaaaa aaaaaaaaaa
     1981 aaaaaaaaaa a
//
