LOCUS       NM_001108793            1100 bp    mRNA    linear   ROD 21-MAR-2023
DEFINITION  Rattus norvegicus coiled-coil domain containing 115 (Ccdc115),
            mRNA.
ACCESSION   NM_001108793 XM_001054974 XM_343551
VERSION     NM_001108793.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1100)
  AUTHORS   Miles AL, Burr SP, Grice GL and Nathan JA.
  TITLE     The vacuolar-ATPase complex and assembly factors, TMEM199 and
            CCDC115, control HIF1alpha prolyl hydroxylation by regulating
            cellular iron levels
  JOURNAL   Elife 6, e22693 (2017)
   PUBMED   28296633
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1100)
  AUTHORS   Jansen JC, Cirak S, van Scherpenzeel M, Timal S, Reunert J, Rust S,
            Perez B, Vicogne D, Krawitz P, Wada Y, Ashikov A, Perez-Cerda C,
            Medrano C, Arnoldy A, Hoischen A, Huijben K, Steenbergen G, Quelhas
            D, Diogo L, Rymen D, Jaeken J, Guffon N, Cheillan D, van den Heuvel
            LP, Maeda Y, Kaiser O, Schara U, Gerner P, van den Boogert MA,
            Holleboom AG, Nassogne MC, Sokal E, Salomon J, van den Bogaart G,
            Drenth JP, Huynen MA, Veltman JA, Wevers RA, Morava E, Matthijs G,
            Foulquier F, Marquardt T and Lefeber DJ.
  TITLE     CCDC115 Deficiency Causes a Disorder of Golgi Homeostasis with
            Abnormal Protein Glycosylation
  JOURNAL   Am J Hum Genet 98 (2), 310-321 (2016)
   PUBMED   26833332
REFERENCE   3  (bases 1 to 1100)
  AUTHORS   Ghosh D, Lippert D, Krokhin O, Cortens JP and Wilkins JA.
  TITLE     Defining the membrane proteome of NK cells
  JOURNAL   J Mass Spectrom 45 (1), 1-25 (2010)
   PUBMED   19946888
REFERENCE   4  (bases 1 to 1100)
  AUTHORS   Pellicano F, Inglis-Broadgate SL, Pante G, Ansorge W and Iwata T.
  TITLE     Expression of coiled-coil protein 1, a novel gene downstream of
            FGF2, in the developing brain
  JOURNAL   Gene Expr Patterns 6 (3), 285-293 (2006)
   PUBMED   16378758
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from CH473965.2.
            
            On or before Oct 4, 2007 this sequence version replaced
            XM_001054974.1, XM_343551.2.
            
            ##Evidence-Data-START##
            Transcript exon combination :: CV108214.1, CK471627.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN06621351, SAMN16093045
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..1100
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="9"
                     /map="9q21"
     gene            1..1100
                     /gene="Ccdc115"
                     /gene_synonym="RGD1304653"
                     /note="coiled-coil domain containing 115"
                     /db_xref="GeneID:363213"
                     /db_xref="RGD:1304653"
     exon            1..562
                     /gene="Ccdc115"
                     /gene_synonym="RGD1304653"
                     /inference="alignment:Splign:2.1.0"
     CDS             452..994
                     /gene="Ccdc115"
                     /gene_synonym="RGD1304653"
                     /codon_start=1
                     /product="coiled-coil domain-containing protein 115"
                     /protein_id="NP_001102263.1"
                     /db_xref="GeneID:363213"
                     /db_xref="RGD:1304653"
                     /translation="MEVQALREELDSKCLQLLSDLEELEAKRAALNARVEEGWLSLAK
                     ARYAMGAKSVGPLQYASRMEPQVCVRASEAQDGPQTFRVIKANAQIPEEVGPSEASLR
                     RRKGPTKTKESGSSVVPQDPLNWFGILVPHSLRQAQASFRDGLQLAADIASLQTRINW
                     GLSQLRGLQRKLKELDPGPA"
     exon            563..666
                     /gene="Ccdc115"
                     /gene_synonym="RGD1304653"
                     /inference="alignment:Splign:2.1.0"
     exon            667..749
                     /gene="Ccdc115"
                     /gene_synonym="RGD1304653"
                     /inference="alignment:Splign:2.1.0"
     exon            750..881
                     /gene="Ccdc115"
                     /gene_synonym="RGD1304653"
                     /inference="alignment:Splign:2.1.0"
     exon            882..1100
                     /gene="Ccdc115"
                     /gene_synonym="RGD1304653"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 tgccgtgcag cttgccccat cttaaaatgg cgaatggcgt cgcaaggtga ttggtcagac
       61 cgacaaccaa tcaattaccc gaatttggga tgtcatgtgg cctaaggccg ccctgataaa
      121 taagtccgtc cgtggcttca ccaacgcttg agccagtcag gcagtaggct aagaaaaagt
      181 aagagtggca actgcgtgga tggcttcctg gactcgactt ttcatagcca tctgattcga
      241 gaaatgttcc gttccagaag ctaaccctca tgcaggccgt tgacacgggt cacccggaag
      301 ttgaaacctt tgacttccgg gccacgatta ggaacgcctc ctaagggcgg atctcgagcg
      361 ttgattggct gacatgcaca tgggctcaca gtgattagag ggctcggaag gaagtggctc
      421 tgcccctccg cgtcccaaga ctacctggac catggaggtc caggccctgc gagaggaatt
      481 ggactcaaag tgcctacagc tgcttagtga cctggaggaa ctggaggcga agagggccgc
      541 actgaacgcc cgggtggagg agggttggct ttcacttgcc aaggctcgct atgccatggg
      601 agccaagtcg gtagggcccc tgcagtatgc ctcgcgtatg gagcctcagg tctgcgtgcg
      661 cgccagcgag gcccaggatg gaccccagac cttcagagtg atcaaagcta acgcccagat
      721 ccccgaggaa gtggggccta gcgaagcatc tctgcgcagg cgcaagggcc ctaccaagac
      781 caaagagtca ggatcctctg tagttcctca agatcccttg aactggtttg gaatcttggt
      841 tcctcatagt ctgcggcagg cccaagccag cttccgggat ggcctacagc tggctgcaga
      901 tatagccagc ctccagactc gcatcaactg gggtctaagt cagctccgag gcctccagag
      961 aaaactgaag gagttggacc ctgggcccgc ctgacctgca tctacttttc gaggcattga
     1021 gcatagctga tgtggatgct actgccttgt cttaggcctt ctttcataaa cagcccctgt
     1081 cttagctgat gcccctccta
//
