LOCUS       XM_039098118            1283 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus coiled-coil domain containing 113
            (Ccdc113), transcript variant X1, mRNA.
ACCESSION   XM_039098118
VERSION     XM_039098118.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051354.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 1, 2024 this sequence was replaced by
            NM_001427628.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1283
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="19"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..1283
                     /gene="Ccdc113"
                     /note="coiled-coil domain containing 113; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 5 ESTs, 3 Proteins, and 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 57 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:291847"
                     /db_xref="RGD:1565763"
     CDS             94..1227
                     /gene="Ccdc113"
                     /codon_start=1
                     /product="coiled-coil domain-containing protein 113
                     isoform X1"
                     /protein_id="XP_038954046.1"
                     /db_xref="GeneID:291847"
                     /db_xref="RGD:1565763"
                     /translation="MSEEDSDSAITDSQTEEEGELPVIQLCGLVEELSYGNSALKTET
                     EMFEKYYSRLEPRDHRMPRLSDIKISAAEFSQLRSRRKSKIRGGMDRLVGLTVEQKLD
                     LVQKELEDTRDEIRHMRANAERDLQHHEAIIEEADIRWNEVQRAVHDFEKDILKTVSK
                     KKGSILATQKVMKYIEDMNRRRDNMKDKLCLKNVSLKVQRKKMLLQLRQKEEVGEALH
                     DVDFQQLKIENAQFLETIEARNQELIQLKLSSGNTLHVLNTYKNKLHRAMEVYINLDK
                     EILLRNEMLGKIEKETIQAEEDRAKAYVLNSKLRKQLAEFRAPQVMMYVREKILNGDL
                     EKTIKMWERKVEIAEMSLKGYRKAWNKMKTSDEQLQMVRPPGK"
ORIGIN      
        1 gcgttcagtt gtctaggcaa cgctctgcaa ggtcgcggcc aaagtgaagc cggacatctt
       61 actgaagact cacagagcac cacaggctga aagatgtctg aggaggactc ggacagcgcg
      121 atcactgact cccagacgga ggaggaaggc gagctgccag tcatccaact gtgcgggctg
      181 gtggaggagc tcagctatgg aaactctgct ctcaaaacag aaacagaaat gttcgagaaa
      241 tattactcta gactggaacc cagggaccac cgaatgccac ggctatcgga tattaaaata
      301 tcagcagcag aattttcaca gctccgatct aggcgtaaat ccaaaatccg tggaggtatg
      361 gaccgtctgg taggcctcac tgtagagcaa aagctcgatc ttgtacagaa ggagctggaa
      421 gacacgagag atgaaatacg gcacatgcgc gctaacgcag aacgggacct gcagcatcac
      481 gaggctatca ttgaggaagc tgacatccgg tggaatgaag ttcagagagc agtgcacgac
      541 tttgaaaaag atatcctgaa aaccgtatcc aagaagaaag ggagcattct ggccactcag
      601 aaagtgatga agtacattga ggacatgaac cgccgtaggg ataacatgaa ggacaaattg
      661 tgtttgaaaa atgtttctct caaagttcaa aggaaaaaga tgcttttaca actgaggcag
      721 aaggaggagg tgggcgaggc cctgcacgac gttgactttc agcagctgaa aatcgagaat
      781 gctcaatttt tggagacgat cgaagcaagg aatcaagaac tgatccagct gaagctgtcc
      841 tctgggaaca ccctgcatgt tctcaatacc tacaaaaaca agcttcatcg agcaatggag
      901 gtatacatca atctggacaa ggagatcctg ctgagaaacg agatgcttgg gaaaattgaa
      961 aaggaaacca tacaagcaga ggaggaccgg gccaaagcct atgtcctgaa cagtaagtta
     1021 cggaagcagc tggctgagtt ccgggctccg caggtgatga tgtacgtcag ggagaagatc
     1081 ctgaatgggg acctggagaa gaccatcaag atgtgggaga ggaaggtgga gatcgcagag
     1141 atgtccttaa aagggtaccg gaaggcctgg aataaaatga agacttcaga tgagcagctg
     1201 cagatggtcc gcccccctgg gaaatagcca ggagcttgca gaccaagaag cgaccattaa
     1261 agttctctat tattttccag taa
//
