LOCUS       XM_039094894            2682 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus coiled-coil domain containing 110
            (Ccdc110), transcript variant X1, mRNA.
ACCESSION   XM_039094894
VERSION     XM_039094894.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051351.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039094894.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2682
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="16"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..2682
                     /gene="Ccdc110"
                     /note="coiled-coil domain containing 110; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 6 ESTs, 2 long SRA reads, 2 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 3 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:290755"
                     /db_xref="RGD:1564538"
     CDS             33..2669
                     /gene="Ccdc110"
                     /codon_start=1
                     /product="coiled-coil domain-containing protein 110
                     isoform X1"
                     /protein_id="XP_038950822.1"
                     /db_xref="GeneID:290755"
                     /db_xref="RGD:1564538"
                     /translation="MLRLEAAELNAWDQTVGKEILSDRNEPGLPSSSSPKAVLGSVPE
                     KHLVEEDDVDSILLSASKILNASEGVKESGGSEPEYGCASEPENQIQPQSALKVLQHQ
                     LESFQALRMQTLQNVSMVQSEISEILNKSIVEVENPQLNSEKNLIFSMHPEKDLPNKT
                     QEEILCTKKSNHFENPKTLHSMEENFSSNSGTDLSQSINIPPQTQVKDVVAVESLRTT
                     AGNSPPSKAVNTSEQPHTRKGFHFYQFLPLPPQTAVPQAAPMILDKSTTTVPFLKHEF
                     CENLDDICHSIKHMKEELQKSNDQELALTNELHNFQMDGRTHSHHKHELFPICSAKLS
                     FIPEENTKGNLSEDSKSKRISELEALVSKLLPLRDTVSKLHVNFCRKCKKLSRSEICR
                     GKKSEKNKDIPITSKNIIDLKFHSRAPRHTLSVLDPGKHKIKDKEGQAFIISQEPVTF
                     ENEKTPKDKCVPEQCVAKIQYLQNYLKESLQYQKKMTELENENLALRTKMKPLVFTAQ
                     SLIQKAETHEKQLKSLTEEKSSLQSQLTKAEEENKDCLRELKTLISTYNVLQGQHKML
                     EEKNSQLSLEKQQMLETIDHLKGKEHRTQSDMAALQNENGRMTIEIEAMKTSMLLTRD
                     EREMLEKDMYQLLKDKGTLEGDLKESKLEILQLKEKEELAHAEQESLLHILDAAKAEK
                     LRLEATLQESASARQMLERELVEIQTYRSAVEEKFLKDIKSAKSETSIYKNNLAEISK
                     ECEVLSKMVMEIKADNQILKEELKKHSQENTKFENSISRLTEDKVLLENYVRSIENER
                     NTLEFEMRTLQRDYINLSEKVSGQNNSASKSTYISRREKFYFDNYDVYEDASSLRNRL
                     LASDLKGIPHKLYQRLPSKICK"
ORIGIN      
        1 gggcttcccg acctctgtta ctaggcaacg ggatgctgag gctagaagcc gcagagctga
       61 atgcttggga ccagacagtt ggtaaagaga tcttaagcga cagaaatgag cccgggctac
      121 cttccagctc ttcgccaaaa gctgtgctcg gctctgttcc agaaaagcac ctcgtggaag
      181 aagatgatgt cgactccatt ctcctttcag catccaagat cctgaatgcc tcagaggggg
      241 taaaggaaag cgggggcagc gaaccagaat atggctgtgc atcagaacca gaaaatcaaa
      301 tccaaccaca atcagcattg aaagtcctgc agcatcagct ggagtcgttt caggctctgc
      361 gaatgcagac tctacagaac gtcagcatgg tacagtctga aatcagtgaa atattgaaca
      421 aaagtattgt tgaagtggaa aacccacaac ttaactcaga aaaaaatcta atattcagca
      481 tgcatcctga aaaggatttg cctaacaaga cacaagaaga aatactttgt accaagaaaa
      541 gtaatcattt cgagaacccc aagactctcc attcaatgga agagaacttc agtagtaaca
      601 gtggcactga tctctctcaa agcataaaca ttccacccca gacacaggtc aaggacgtgg
      661 tagctgtgga gagcctgaga actacagcag gtaactcacc tcccagcaaa gctgtgaaca
      721 cttcagagca gccccatacc agaaagggct tccattttta tcagtttcta cctctgcctc
      781 ctcagactgc agtacctcaa gctgctccca tgattctgga taaatccact accaccgtcc
      841 ctttcctgaa gcatgagttc tgtgaaaact tagacgacat ttgccactct attaagcaca
      901 tgaaagaaga gcttcagaag tcaaacgacc aggaactggc tcttacgaat gaacttcaca
      961 atttccagat ggatggaagg actcacagtc accataaaca tgagctattc cccatttgta
     1021 gtgccaagct tagttttatt ccggaagaaa acacaaaagg taacttaagt gaagacagca
     1081 aatcgaagag gatttctgaa ttagaggcat tggtgagcaa actactccca ctcagggaca
     1141 cagtgtcaaa attacacgtg aatttttgta ggaaatgtaa aaaattatct agaagtgaaa
     1201 tatgccgggg gaaaaagagt gagaaaaata aagacatccc tatcaccagc aagaatatta
     1261 tagatttaaa atttcactcc cgagctccga ggcacactct gtccgtcctg gacccaggga
     1321 agcacaaaat aaaagacaaa gaaggccaag cgttcatcat cagccaagaa ccagtaacgt
     1381 ttgaaaatga gaagacaccc aaagacaagt gtgtccctga gcagtgtgtt gccaaaatcc
     1441 agtacctaca gaattacctc aaagaatcct tgcagtatca gaaaaagatg acagaacttg
     1501 agaatgaaaa cctggccctt aggaccaaaa tgaagcccct cgtgttcacg gcgcaatccc
     1561 tgatccagaa ggcggaaacc cacgaaaagc aattgaagtc tctgaccgaa gaaaagagct
     1621 ctcttcagtc ccagttaacc aaagcggagg aagagaacaa agactgcctc agggaactga
     1681 agacactcat cagcacctac aatgtcctcc aaggccaaca caaaatgcta gaggagaaaa
     1741 acagccaact gtctctggaa aagcaacaga tgctggaaac aatcgaccac ctgaagggca
     1801 aggagcacag gacccaaagt gacatggccg ctctgcaaaa cgaaaacggt aggatgacta
     1861 tagaaataga agcaatgaag actagcatgc tgctgacacg agatgagagg gaaatgctgg
     1921 agaaagacat gtaccaactc ctgaaagaca agggcacgct ggagggtgac ctgaaagaga
     1981 gcaagctgga aatcctgcag ctaaaagaga aggaggagct ggcccacgcc gagcaggagt
     2041 cgcttcttca catactggac gcagctaagg cagagaagct gagactggag gcaacattac
     2101 aagagtccgc ttctgccaga cagatgttgg aacgagaact cgtggagatt cagacctacc
     2161 ggtctgccgt ggaagagaag ttcctgaaag atatcaaaag cgccaagtca gagacgagca
     2221 tttacaagaa caacctggca gaaatcagca aggaatgtga ggtgttgtcc aaaatggtca
     2281 tggagattaa ggcggataac cagattctga aagaagagct aaagaaacac agtcaagaaa
     2341 acaccaagtt cgaaaacagc atcagtcggc tcacggaaga caaggtactt ttggaaaact
     2401 acgtgagaag catagaaaac gagaggaaca ccctggaatt tgagatgcgg actcttcagc
     2461 gagactacat aaatttaagc gagaaagtct ctggtcagaa caacagtgca tcgaaatcga
     2521 cttacatttc aagaagagaa aaattttatt ttgacaacta cgatgtctat gaagatgctt
     2581 ccagtcttag gaaccggctt ttggcttctg acttgaaagg aataccacat aaactatatc
     2641 aacgacttcc atccaagata tgtaaataaa tttcaaaaga aa
//
