LOCUS       NM_001107957            1620 bp    mRNA    linear   ROD 31-MAR-2024
DEFINITION  Rattus norvegicus coiled-coil domain containing 107 (Ccdc107),
            mRNA.
ACCESSION   NM_001107957 XM_001063219 XM_003749929 XM_003754010 XM_233382
VERSION     NM_001107957.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1620)
  AUTHORS   Bonaldo,M.F., Lennon,G. and Soares,M.B.
  TITLE     Normalization and subtraction: two approaches to facilitate gene
            discovery
  JOURNAL   Genome Res 6 (9), 791-806 (1996)
   PUBMED   8889548
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000005.1 and CB327616.1.
            
            On or before Aug 15, 2019 this sequence version replaced
            XM_003749929.4, XM_003754010.4, NM_001107957.1.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26643298.27106.1,
                                           SRR26643287.13099.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760386
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-167               JAXUCZ010000005.1  62545350-62545516
            168-319             JAXUCZ010000005.1  62545588-62545739
            320-380             JAXUCZ010000005.1  62547190-62547250
            381-471             JAXUCZ010000005.1  62547331-62547421
            472-584             JAXUCZ010000005.1  62547499-62547611
            585-1603            JAXUCZ010000005.1  62547692-62548710
            1604-1620           CB327616.1         1-17                c
FEATURES             Location/Qualifiers
     source          1..1620
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="5"
                     /map="5q22"
     gene            1..1620
                     /gene="Ccdc107"
                     /gene_synonym="RGD1560252"
                     /note="coiled-coil domain containing 107"
                     /db_xref="GeneID:313496"
                     /db_xref="RGD:1560252"
     exon            1..167
                     /gene="Ccdc107"
                     /gene_synonym="RGD1560252"
                     /inference="alignment:Splign:2.1.0"
     CDS             62..787
                     /gene="Ccdc107"
                     /gene_synonym="RGD1560252"
                     /note="coiled-coil domain-containing protein 107"
                     /codon_start=1
                     /product="coiled-coil domain-containing protein 107
                     precursor"
                     /protein_id="NP_001101427.2"
                     /db_xref="GeneID:313496"
                     /db_xref="RGD:1560252"
                     /translation="MAGAGPVLSILGLLLVSALFGVLGERPNPDLGAHPERRSQVGPG
                     ATEPRRQPPPKDQRERARAGSLSLGALYTAAIVAFVLFKCLQGPDEAAVPREEKNKKK
                     SSQSEQQLVQLTQQLAQTEEHLNNLMTQLDPLFERVTTLVGTQRELLNAKLKTIHHLL
                     QDCKPGIGVEAPEPEAPIHFPEDLGKEDQEDAGNSQAWEEPINWSSETWNLAPSWEVE
                     QGLRRRWHKTKGPAVNGGQALKV"
     exon            168..319
                     /gene="Ccdc107"
                     /gene_synonym="RGD1560252"
                     /inference="alignment:Splign:2.1.0"
     exon            320..380
                     /gene="Ccdc107"
                     /gene_synonym="RGD1560252"
                     /inference="alignment:Splign:2.1.0"
     exon            381..471
                     /gene="Ccdc107"
                     /gene_synonym="RGD1560252"
                     /inference="alignment:Splign:2.1.0"
     exon            472..584
                     /gene="Ccdc107"
                     /gene_synonym="RGD1560252"
                     /inference="alignment:Splign:2.1.0"
     exon            585..1604
                     /gene="Ccdc107"
                     /gene_synonym="RGD1560252"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 acgaccggag gcccagcggt ggaacgcggg gacctccgtg cactattctg gtgggccagg
       61 catggcgggc gctggcccgg tgttgagtat tctggggctg ctgcttgtgt ctgctctgtt
      121 tggcgtcctc ggagagcgcc ccaaccccga tctgggggca cacccagaac gccgctccca
      181 ggtcggtccc ggggccaccg aacctcggcg gcagccgcca cccaaggacc agcgcgagcg
      241 ggcccgggcc ggatcgctgt ctttgggcgc gctgtacacc gcagccatcg tggcttttgt
      301 gctgttcaag tgtttgcagg gcccagatga ggctgctgtc ccccgagagg aaaaaaacaa
      361 gaagaaatcc tcacagtcag aacaacagct ggtgcagctg acccaacagc tggcccagac
      421 agaagagcac ctgaacaacc tgatgaccca gctggatccc ctctttgagc gggtgactac
      481 tttggttgga acccagcggg aacttctaaa cgcaaaatta aagaccatcc accaccttct
      541 acaagactgc aagcctggca taggggtgga agctccagaa ccagaagccc ccatacactt
      601 tccggaggac ctggggaaag aagaccaaga ggatgctgga aacagtcagg cctgggaaga
      661 acccataaac tggagctcag agacatggaa cctagctcct tcctgggaag tggagcaggg
      721 gctgaggaga aggtggcaca agacaaaggg tccagcagta aatgggggac aagcactgaa
      781 ggtttagtaa aaacagtcgt cttgggattg gggatttagc tcagtggtag agcacttccc
      841 tagaaactgc aaggccctgg gttgggtccc cagctccgaa aaaaagaaaa aggaggaaaa
      901 acaaaacaac aacaaaaaaa aaaaccagtt gtctcatact aggtcttcct ctgtgctttt
      961 cccactccca gctgtacaca cacacacaca cacacacaca cacacacaca cacacacaca
     1021 cggtgcataa gccaagcggg cttcccttat taggaaaaga gagactgcct ttcagaatgt
     1081 gaatggagaa gacagacagt gggagctaca gttcccttgt gttcccgagg ctaccgatgt
     1141 gccagccacc gaggctcaaa ctcggttttc tcatggttta gacagaaagg cctttgcaaa
     1201 aacaaaacag cagcacttta ttaaaatcca gtgaggaaat aaattataga acttttacat
     1261 cataggaggt agttcaagag gatctggagt ttaaggccac cctgggctac atgaaacttt
     1321 gtctcaagaa aaacaaaact atgtacagta gccaggtacg gcagcacaca cctatacacc
     1381 caacacctga gaggctgagg caggaggcat tcaagttcac tgtcagcctg ggtcacatag
     1441 taagatcctt tctcaaaaat aaaacaaacc ataggcaaca acaaaatggc ctcctttaca
     1501 aagccgcaaa tgtgataaca gctggccaca gaccacagga gctttacagc cccgccccac
     1561 cccaccccca gtggcatggc attaaagggg cttgttcaac tgagaaaaaa aaaaaaaaaa
//
