LOCUS       NM_001400938            1407 bp    mRNA    linear   ROD 31-MAR-2024
DEFINITION  Rattus norvegicus coiled-coil domain containing 106 (Ccdc106),
            mRNA.
ACCESSION   NM_001400938 XM_039100537
VERSION     NM_001400938.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1407)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
COMMENT     INFERRED REFSEQ: This record is predicted by genome sequence
            analysis and is not yet supported by experimental evidence. The
            reference sequence was derived from JAXUCZ010000001.1.
            
            On Jan 28, 2022 this sequence version replaced XM_039100537.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26643298.1342.1,
                                           SRR26643291.665.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMN12840105,
                                           SAMN12840106 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-262               JAXUCZ010000001.1  77812555-77812816   c
            263-336             JAXUCZ010000001.1  77811876-77811949   c
            337-441             JAXUCZ010000001.1  77811633-77811737   c
            442-618             JAXUCZ010000001.1  77811369-77811545   c
            619-831             JAXUCZ010000001.1  77809801-77810013   c
            832-1407            JAXUCZ010000001.1  77808723-77809298   c
FEATURES             Location/Qualifiers
     source          1..1407
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /map="1q12"
     gene            1..1407
                     /gene="Ccdc106"
                     /gene_synonym="RGD1566222"
                     /note="coiled-coil domain containing 106"
                     /db_xref="GeneID:499071"
                     /db_xref="RGD:1566222"
     exon            1..262
                     /gene="Ccdc106"
                     /gene_synonym="RGD1566222"
                     /inference="alignment:Splign:2.1.0"
     exon            263..336
                     /gene="Ccdc106"
                     /gene_synonym="RGD1566222"
                     /inference="alignment:Splign:2.1.0"
     CDS             306..1148
                     /gene="Ccdc106"
                     /gene_synonym="RGD1566222"
                     /codon_start=1
                     /product="coiled-coil domain-containing protein 106"
                     /protein_id="NP_001387867.1"
                     /db_xref="GeneID:499071"
                     /db_xref="RGD:1566222"
                     /translation="MNDRNNHRRTMKDEETFEISIPFEEAPHLDSQIFYSLSPSRRNF
                     EEPPEATSPTLALMNSVKTQLHMALERNSWLQKRIEDLEEERDFLRCQLDKFISSARM
                     DAEDHCRMKPGPRRADGDSRAGVGGEASDPESAASSFSGLSEEGSASERKRQKQKGSA
                     GRRRFGKPKARERQRVKDADGVLCRYKKILGTFQKLKSMSRAFEHHRVDRNTVALTTP
                     IAELLIVAPEKLAEVGEFDPSKERLLEYSRRCFLALDDETLKKVQALKKSKLLLPITY
                     RFKR"
     exon            337..441
                     /gene="Ccdc106"
                     /gene_synonym="RGD1566222"
                     /inference="alignment:Splign:2.1.0"
     exon            442..618
                     /gene="Ccdc106"
                     /gene_synonym="RGD1566222"
                     /inference="alignment:Splign:2.1.0"
     exon            619..831
                     /gene="Ccdc106"
                     /gene_synonym="RGD1566222"
                     /inference="alignment:Splign:2.1.0"
     exon            832..1407
                     /gene="Ccdc106"
                     /gene_synonym="RGD1566222"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 aagtgcggcc ccgacctccg cgcaaacggc gggcctcacc tgggctccag gaagaggcgc
       61 cccgggcccg ggaggtctgg tcccgctcgt gccctcgtct ccgcgttctc cgccatccag
      121 ttccgagact ccccctcctc tgccgctgcg cccgctttct ggtgggtggg cgcttctttc
      181 cgcgacactt tgcagacgct cccctgcgct gggcatgggc gccgccactg ccgtcggtcc
      241 cggggctgga gtccgtgccc cgtgccccca aggactcaac tgctgggtct gccagaagcc
      301 tcgatatgaa tgacagaaac aaccataggc ggacaatgaa ggatgaagag acttttgaga
      361 tctccattcc cttcgaagag gcaccccatt tagactcaca gatcttctat agtctgagtc
      421 cctcacggag aaattttgag gagcctccag aggccacctc cccaaccctg gccctgatga
      481 acagtgttaa gacccagctg cacatggcac ttgagaggaa ctcgtggttg cagaagcgca
      541 ttgaggacct ggaggaggag agggactttt tgcggtgtca gctggacaaa ttcatttcct
      601 ctgcccggat ggatgcagag gaccactgcc ggatgaagcc tggacctcgg agggctgatg
      661 gggacagccg ggctggggtt gggggagaag cctcagaccc tgagtcagca gcctcctcct
      721 tcagcgggtt gtccgaagag ggaagtgcca gtgaaaggaa gaggcagaag caaaagggaa
      781 gtgctggccg gaggagattt gggaagccca aggctcgaga gaggcaacgg gtgaaggatg
      841 ctgatggggt cctgtgccgc tacaagaaga tcctgggcac cttccagaag ctgaagagca
      901 tgtccagagc ttttgagcac caccgtgtgg acaggaacac cgtggcgctg accacgccca
      961 tcgcagagct actcattgtg gctcccgaaa agctggctga ggtgggagag ttcgatccat
     1021 ccaaggagcg cctgctagag tattcccgcc gctgcttcct ggcactggac gacgagactc
     1081 tcaagaaggt gcaggctctc aagaagagca aactgctcct gccaatcacc taccgcttca
     1141 agcggtgatg ccgccgcccc atacacctcc ctgcccagca gagtgccagg cctggtttcc
     1201 ccgggcgccg ccagggctag aagctgccct tcgagagcac taggcccggt ctctcggccg
     1261 cacacgttag gcaccccacc tccatttcac tccgcaaggg ctgccagctc tgcctcccta
     1321 gccaggagta gcccatctgc atcccacgcg aagacagagc attattctga gagtttaaat
     1381 taaagagaca tgaaaatttt caataaa
//
