LOCUS       XP_017456613             408 aa            linear   ROD 22-FEB-2024
DEFINITION  collagen and calcium-binding EGF domain-containing protein 1
            isoform X1 [Rattus norvegicus].
ACCESSION   XP_017456613
VERSION     XP_017456613.1
DBLINK      BioProject: PRJNA1074393
DBSOURCE    REFSEQ: accession XM_017601124.3
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_086036) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Jul 30, 2024 this sequence was replaced by
            NP_001419383.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_036323735.1-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/09/2024
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..408
                     /organism="Rattus norvegicus"
                     /strain="BN/NHsdMcwi"
                     /bio_material="RGD 61498"
                     /db_xref="taxon:10116"
                     /chromosome="18"
                     /sex="male"
                     /tissue_type="kidney, spleen, liver"
                     /geo_loc_name="USA: Wisconsin, Milwaukee"
                     /lat_lon="43.05 N 88.04 W"
                     /collected_by="Rebecca Schilling, Melinda Dwinell"
     Protein         1..408
                     /product="collagen and calcium-binding EGF
                     domain-containing protein 1 isoform X1"
                     /calculated_mol_wt=44127
     Region          135..176
                     /region_name="EGF_CA"
                     /note="Calcium-binding EGF-like domain; smart00179"
                     /db_xref="CDD:214542"
     Site            order(135,138,153)
                     /site_type="other"
                     /note="Ca2+ binding site [ion binding]"
                     /db_xref="CDD:238011"
     CDS             1..408
                     /gene="Ccbe1"
                     /coded_by="XM_017601124.3:1..1227"
                     /db_xref="GeneID:361341"
                     /db_xref="RGD:1307670"
ORIGIN      
        1 mvpplplsrg gavkgqlgks lgplllllal ghtwtfreep edrdrevcse nkitttkypc
       61 lkssgelttc frkkcckgyk fvlgqciped ydicaqapce qqctdnfgrv lctcypgyry
      121 drerhqkrek pycldideca tgnttlcaht cvntmgsyhc ecregyiled dgrtctrgdk
      181 ypndtgheek senevkagtc catckefsqm kqtvlqlkqk isllpnnaae lgkyvngdkv
      241 lasntylpgp pglpggqgpp gspgpkgspg fpgmpgppgq pgprgsmgpm gpspdlshik
      301 qgrrgpvgpp gapgrhglkg ergapgppgs pgppgsfdfl llvladirnd iaelqekvfg
      361 hrihssaedf plpqefssyp etldfgsgdd ysrrteards eaprnfyp
//
