LOCUS       XM_008772897            3846 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus cell division cycle and apoptosis
            regulator 1 (Ccar1), transcript variant X6, mRNA.
ACCESSION   XM_008772897
VERSION     XM_008772897.3
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051355.1) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_008772897.4.
            
            On Jan 21, 2021 this sequence version replaced XM_008772897.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3846
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="20"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..3846
                     /gene="Ccar1"
                     /gene_synonym="RGD1560358"
                     /note="cell division cycle and apoptosis regulator 1;
                     Derived by automated computational analysis using gene
                     prediction method: Gnomon. Supporting evidence includes
                     similarity to: 1 mRNA, 40 ESTs, 3 long SRA reads, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 65 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:361849"
                     /db_xref="RGD:1560358"
     CDS             146..3043
                     /gene="Ccar1"
                     /gene_synonym="RGD1560358"
                     /codon_start=1
                     /product="cell division cycle and apoptosis regulator
                     protein 1 isoform X4"
                     /protein_id="XP_008771119.1"
                     /db_xref="GeneID:361849"
                     /db_xref="RGD:1560358"
                     /translation="MPFKWNAQRIQTLPNQNQSQTQPLLKTPTAVIQPIVPQTTFGVQ
                     AQPQPQSLLQAQISAASITPLLQTQPQPLLQQPQQKAGLLQPPVRIVSQPQPARRLDP
                     PSRFSGRNDRGDQVPNRKDDRSRERDRERRRSRERSPQRKRSRERSPRRERERSPRRV
                     RRVVPRYTVQFSKFSLDCPSCDMMELRRRYQNLYIPSDFFDAQFTWVDAFPLSRPFQL
                     GNYCNFYVMHREVESLEKNVAVLDPPDADHLYSAKVMLMASPSMEDLYHKSCALAEDP
                     QDLRDGFQHPARLVKFLVGMKGKDEAMAIGGHWSPSLDGPNPEKDPSVLIKTAIRCCK
                     ALTGIDLSVCTQWYRFAEIRYHRPEETHKGRTVPAHVETVVLFFPDVWHCLPTRSEWE
                     TLSRGYKQQLVEKLQGERKKADGEQDEEEKDDGEVKEIATPTHWSKLDPKAMKVNDLR
                     KELESRALSSKGLKSQLIARLTKQLKIEEQKEEQKELEKSEKEEEDEDDKKSEDDKEE
                     EERKRQEEVERQRQERRYILPDEPAIIVHPNWAAKSGKFDCSIMSLSVLLDYRLEDNK
                     EHSFEVSLFAELFNEMLQRDFGVRIYKSLLSLPEKEDKKDKEKKSKKEERKDKKEERE
                     DDIDEPKPKRRKSGDDKDKKEDRDERKKEEKRKDDSKDDDETEEDNNQDEYDPMEAEE
                     AEEEEDADLSPLCFTDREEEEVNKRDDKRDVSRYCKDRPSKDKEKEKPQMVTVNRDLL
                     MAFVYFDQSHCGYLLEKDLEEILYTLGLHLSRAQVKKLLNKVVLRESCFYRKLTDTSK
                     DGESHDEPESLQGDTTLGNRLLLPTPTVKQESKDGEENVGLIVYNGAMVDVGSLLQKL
                     EKSEKVRAEVEQKLQLLEEKTDEDGKTILNLENSNKSLSGELREVKKDLGQLQENLKV
                     SENMNLQFENQLNKTLRNLSTVMDDIHTVLKKDNVKNEDRDQKSKENGSSV"
ORIGIN      
        1 caatattcac aacctcagca ggccttgtat agtgtgcaac agcagttaca gcaaccccag
       61 cagaccattt taacacagtg ctgttaaagg gaaaaccccc caagtgggtg atagagtctt
      121 ggttgaagca acctataatc ctaatatgcc ttttaaatgg aatgcacaaa gaattcaaac
      181 actaccaaat cagaatcagt cacaaaccca acctttactg aagactccta ctgctgttat
      241 ccagccgatt gtgccacaga caacatttgg tgttcaggca cagccccaac cccagtcatt
      301 attgcaagcc cagatctcag ctgcttctat tacaccccta ttgcagacgc agccacagcc
      361 cttactacag cagccacagc aaaaagctgg cttattgcag cctcctgtcc gaatagtatc
      421 acagccacaa cccgcacgga gattagatcc gccatctaga ttttcaggaa gaaatgacag
      481 aggggatcaa gtacctaata gaaaagatga ccgaagtcgt gaaagggaca gagaaagacg
      541 cagatccaga gaaagatcac ctcagaggaa acgttcccgg gagaggtcgc cccggagaga
      601 aagagagcga tcccctcgga gagtccgccg tgtcgttcca cggtacacag tgcagttttc
      661 aaagttttct ttagattgtc ccagttgtga catgatggaa ttaaggcgcc gttatcagaa
      721 cttatatatt cctagtgact tttttgatgc tcagtttaca tgggtggatg ctttcccttt
      781 gtcaagacca tttcaactgg gaaattactg caatttttat gtgatgcacc gagaagtgga
      841 gtccttagaa aaaaatgtgg ctgttcttga cccacctgat gctgaccacc tgtacagtgc
      901 aaaggtaatg ctgatggcta gccctagtat ggaagatttg tatcataagt catgtgctct
      961 tgctgaagac ccacaagacc ttcgtgatgg ttttcagcat cctgctagac ttgttaagtt
     1021 tctagtggga atgaaaggca aggatgaagc catggccatt ggaggccact ggtctccttc
     1081 gctggatgga ccaaacccag aaaaagaccc ctctgtgttg attaagactg ccattcgttg
     1141 ttgtaaggcc ctgacaggca ttgatctaag tgtgtgcaca caatggtacc gttttgcaga
     1201 gattcgctac catcgccctg aggagaccca caaggggcgt acagttccag ctcatgtgga
     1261 gacagtggtt ttatttttcc cggatgtttg gcattgcctt cccacccgct cagagtggga
     1321 aaccctctcc cgaggataca agcagcagct ggtcgagaag cttcagggtg aacgcaagaa
     1381 ggctgatgga gaacaggatg aagaagagaa ggatgatggt gaagttaaag aaattgctac
     1441 tcctacccat tggtctaaac ttgatccaaa ggcaatgaag gtaaacgatc tccgaaaaga
     1501 attagaaagt cgagctctta gttccaaagg actaaaatcg cagttaatag ctcgcctgac
     1561 aaagcagctt aaaatagaag aacagaaaga agagcagaag gaattagaga agtctgaaaa
     1621 ggaagaggaa gatgaggatg ataagaagtc tgaggatgat aaagaggaag aagaaagaaa
     1681 acgtcaagaa gaagtggaac gccaacgcca agaaagaaga tacattttgc ctgatgagcc
     1741 tgccataatt gtccatccaa actgggctgc aaaaagtggg aagtttgatt gcagcatcat
     1801 gtctttgagt gtccttttag actacagatt ggaagataat aaagaacatt cgtttgaggt
     1861 ttcattgttt gcagaacttt tcaatgaaat gcttcaaaga gattttgggg tcagaatata
     1921 caaatcatta ctctctcttc ctgagaaaga ggacaaaaaa gataaggaaa agaaaagcaa
     1981 aaaagaagag agaaaagata aaaaagaaga gagagaagat gatattgatg aaccaaaacc
     2041 aaaacggaga aaatcgggcg atgataaaga caaaaaagaa gacagagatg agaggaagaa
     2101 agaagagaaa agaaaagatg attctaagga tgatgatgaa actgaagaag ataacaatca
     2161 ggatgagtat gaccccatgg aggcagagga ggcggaggag gaggaggacg cggacctgtc
     2221 tcccctttgc tttacagaca gggaggagga ggaagtgaac aaacgagacg acaaaaggga
     2281 cgtcagccga tactgcaagg acagaccctc aaaggacaag gaaaaagaga agcctcaaat
     2341 ggtcacagtt aacagggatc tgctaatggc ctttgtttat tttgatcaaa gtcattgtgg
     2401 ttaccttctt gaaaaggatt tggaagaaat actttatact cttggactgc atctttctcg
     2461 ggctcaggta aagaaactgc tcaataaagt agtgctccga gaatcgtgct tctatcggaa
     2521 attaacagac acctcaaaag acggcgagag ccatgacgag ccagagtcgc tgcaggggga
     2581 cacgacgctg ggaaacaggt tactacttcc cacaccaaca gtgaagcagg aatcgaagga
     2641 tggagaagaa aacgtagggc ttattgtgta caacggtgca atggtggatg ttgggagtct
     2701 cttacaaaag ctggaaaaga gtgaaaaagt aagagctgag gtagaacaga agctccagtt
     2761 actagaggag aaaacagatg aagacggaaa aactatatta aacttggaga attctaacaa
     2821 aagcctctct ggtgaactta gagaggtcaa aaaagacctt ggtcaattac aagaaaactt
     2881 gaaggtttca gaaaacatga atttgcaatt tgaaaaccaa ttgaataaaa cactcagaaa
     2941 cttatccaca gtcatggatg atatccacac tgtcctaaaa aaggataacg taaagaatga
     3001 agacagagat cagaaatcca aggagaatgg ttcaagtgta tgataaaata catttggtga
     3061 tgaggagtgg tgttaaataa tgtactatat aaaaatcatg acacaggaat gtttgagggc
     3121 aatgcatgtt tgattttagt agtataaaca tatgttagtt caaatgatgt ataaagtttt
     3181 atgaatgtga gtttgctttt gaaaattgcc tgtaatttct agcattcaaa ttaaatactc
     3241 actgagtgaa gaattttgca ttgcaaaatc ttttaggatg aactttgtta tagttttaac
     3301 cccaataaag ttcatcagtt taattgacaa taacttgtaa ttactaaatg tcttttattg
     3361 aaatatctag acattttgct tttatttata gaactattgt tttatagttt tatagttcac
     3421 tttttttagt gtcagtatgt atcataaaat agcatgctcc ttaatatttg caaccttttt
     3481 ggactagtat tttcagtgtt taaatgtagt tgttaagccg tctgctcatg gtggcacatc
     3541 ccattaaccc cagtgagaca ctgtctcagg aacaatgcaa ttaatccaaa agacgctgtg
     3601 taaaagccta caactgagaa agcgatcgag ctagcattgt gcttagagtt tacacaaagt
     3661 aaccgtcttg acagtagtta ctgtactcag ttaattgttt tacttgccct ggatacttct
     3721 attttaattt tcagaagtta aaaaggaggc agtggacatc aaatgcacag cttagtgaca
     3781 agccagtaca tcgtcagttt gattgatgcc ttaagttaag tcattaaaaa atattttttt
     3841 aattaa
//
