LOCUS       XM_039095248            5706 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus coiled-coil and C2 domain containing
            2B (Cc2d2b), transcript variant X1, mRNA.
ACCESSION   XM_039095248
VERSION     XM_039095248.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051336.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039095248.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5706
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..5706
                     /gene="Cc2d2b"
                     /note="coiled-coil and C2 domain containing 2B; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 1 Protein, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 3 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:294054"
                     /db_xref="RGD:1310408"
     CDS             1242..5672
                     /gene="Cc2d2b"
                     /codon_start=1
                     /product="protein CC2D2B isoform X1"
                     /protein_id="XP_038951176.1"
                     /db_xref="GeneID:294054"
                     /db_xref="RGD:1310408"
                     /translation="MFLTVEPSLQPLLCLLILSQQSCFNNTVSHSSLDSDNKRVIMKK
                     LSKRREEIFRKMSEAATSSTEEIMDRRLSKGSPAEENRNITETLRGKVREKLKHAKIS
                     QGEKSSAELLADTRTCRWSKTEVLLDEGLSFFILSGEEDSAASRSSRQKTVSESYFKH
                     CASGGGFQIATEGQDEDFMEEVILTDLFEVKAAKYEDDQELIKKQEATIFVPSSSPVA
                     SQQKLPKGVLPRILEDEGLYTQKKPETCKKICNKMENRLLSLQEGKCWFEESGEIMSL
                     PSPLRQSWNFRLCMCKESLNPALKTIHRKAEKYDVGCCFRNRMDGQRETYQLDLNIVG
                     LQFSHHPLFNQEQVLCARLLQLCESFQDRQKQSLSQLLYEKLRALKDATKLASKNPES
                     SQFTKKSLQDYYQQISDTEQLYDAEREKDHCLLHSVSQTWKQIKSLRQKQGFTSTPVK
                     LQFHRIKMNTWDEQNQVGMSEGPGDESEETPFPKEDPQETLSHPASDPEGLEAERRKP
                     ITLAPQLSFTAELTNISKCSLYEQKRRAKMQKLKYFIKIFYNDKQVSCTSVSPLQLDF
                     KVMFQQIFNIQLMYWPETICLEVYEIRKRSTLLVKMYLPLPNKTELKGKTALEYTEFS
                     SDKLVIPMDGGVGSNVPFNLEESENEELCLLTSGKLSYSLSWALDENGMPLTPVSQSL
                     NSAYCSVLRNVDARGVPGLPWIVNSQKLCDWADDIRIDPNNPEYSDITELIMYLRHKG
                     QEIPKYFRLDQLQDEFNFVSEEEMKRSKRFQLLELRNAGQLDLFLLQQMPLYDNEIPD
                     IVFQEFESQAQKDVSISDVNSITAQRINSVNFLRKVRRLIMKKIVKVSKFNLSDIVAD
                     YEEIVSTSQLTDALCKFIEPRRKLKPQRKERRKVTAQSISDGDIKILVRILRAYNIPT
                     RKTTSYRTWSMPTYLSSSMSYLRYQNEAKLVPSNEVINEDTVHPFIEVSFQHTVYQTN
                     IANGSHPCWNEEIKVDFISPGHDYSFSSLSKIKDNIHINVFDEVVIEKHEDHCLKSCS
                     AHSYIQKNWLGSISFPFSALLQQPEISGTFQVNIPPILLGYTWSNTYVSPREDCSGQN
                     PKECTFLNIFATIEPQISYVMYNPKVDEFSDQIDILQRAQTFTRNCKAMFPSRRVMAT
                     VFNGEGMQILVTRYIKALNPPQQLLDIFLHDSNATLDLIARFVSLIPFAAETLDENDG
                     ADIWMTSECCISLAIGSKEEHAILLCNFFLYFGKKALVILGTSVLEGHVAYVLTQETG
                     ECLLWNPSTGQCYKQFDPFCPLQSVDCLFNDKNVWFNIQQNNTPMAVHFDCSKESFWK
                     QLLPKNFQWTKAQSVQPEEIVYLDTNKSMVEDLKSRIERALKCKMMEWRPKHPTRWNR
                     QCTSVLRQILPKLEFYTGSFASFEDSELERLLQFYWVTGFPIQMPYTDVQAVIDAVYQ
                     TGVHSSEFPQTEFALAVYIHPYPNNILSVWIYLASLARHQ"
ORIGIN      
        1 ttactgatat aaatttgatt gctaaattac aagtttatag agtttcaatt ttaatgggtt
       61 actgggagtt gtgactataa ccacaggggg cagatgctgg gactgtgaac agagttcaca
      121 gcagagagtc ccaagagggc agctcctgct ggggccagag acagattatc gctgatgagg
      181 ctagtcacgc tgctatgagg gcccagagag tagctggtgg cagtgtggga tagaaattgg
      241 gaacttagcg agtcaggtgg agttgttttg ctgactgaga tgaaactacc ccgcagatgc
      301 catgtggcct gccaatgctg gcaatagtgt gggttggtgc atctagcctt attatttacc
      361 gcaacactga ctttttttgt caacttattc ctgttgtgtt ttatcttgac acgtcatcag
      421 tgagaatctt aagtgtcctt atgtcaatca ttgaaatgtc ccatctacga attaagaaaa
      481 aaaaatctag ctaacttgct cttgactctt ttctattcca acctattcag tatctttaca
      541 tcttgtccag ccctcttccc tgagtgtttc atatatgttt gcctccacgc tgcatcacca
      601 aaagcccacc agaatgggtg gcatctcatt aaagctgtag tatactgtgc aacttgccag
      661 acaagttgga gagtgcctgt ctgcagtcct tacacttata taagctcgga aaggaggggc
      721 ctagtgctac tggtcagttt caggaacttc ctggaccttt ataattgctt actttcagag
      781 tcttaatgac cttccatgct ttcactgtcc tttaaaacat gctgtgctct aagaagcttc
      841 tgtccaagat ggaaggtttt agctcagagg aaattgctac atcaattacc aaaatttcta
      901 ttaaagacta aaagctgaga acatatacgt attaaatatt gaagatacta attatttatt
      961 ttgtattttt tataacgtat agtcagatgt cttaggtagg gcaagagcaa agtgacacta
     1021 tttttcattt tgcttttggt atctttttcg aattctattc ttttgttttt ttaatgtgta
     1081 tgtgtatttt gcctacaggt atgtctgtgg accatgtgca tgcactgccc agagagaccg
     1141 ggaggaggca ctagatgcct ggggactgga gttaagagaa ggttgtgagc tgccatgtgg
     1201 gtgctgggaa atcaaacctg ggtcctctgg aagagcagcc catgttcttg actgttgaac
     1261 catctctcca gcccctacta tgcctcttaa tcctgtcaca gcagtcttgt tttaataaca
     1321 cagtttctca ttcttcttta gatagtgaca acaaaagagt catcatgaaa aaactttcaa
     1381 agagaagaga agagattttt agaaagatgt cagaagcagc aaccagcagc acagaagaaa
     1441 taatggacag gcgactgtca aaaggttctc ctgcagaaga aaatcgaaac ataacagaga
     1501 cactgagagg caaagtaaga gaaaaactaa aacatgctaa gatcagtcaa ggggaaaagt
     1561 cctcagccga gctgctcgct gacacaagga cttgtcgctg gtccaagact gaagtcttgc
     1621 tggacgaagg tctttcattt ttcatcctga gtggggaaga agattcagca gcgagccggt
     1681 cttcgaggca gaaaacagta agtgagagtt acttcaagca ctgtgcatct ggtggtggtt
     1741 tccaaattgc tactgagggc caagatgagg attttatgga ggaagtaatc ttaacagatt
     1801 tatttgaagt gaaagctgcg aaatatgaag atgatcaaga actgataaaa aaacaggagg
     1861 caactatctt tgtgccgagt agttctccag tggccagcca gcagaaactg cccaaaggtg
     1921 tgctgcctcg cattttagaa gatgaaggac tctacactca gaaaaagcca gagacttgca
     1981 aaaagatctg caacaaaatg gaaaatcgct tgctcagcct gcaggaggga aaatgttggt
     2041 ttgaagaaag tggagaaata atgtcattac cttcgcctct tagacagtcg tggaatttta
     2101 ggctctgcat gtgcaaggaa tcattgaatc cagcactaaa gactatacac agaaaggcag
     2161 agaaatatga cgtgggatgc tgttttagaa acagaatgga tggtcagagg gaaacgtacc
     2221 aattagacct gaacatcgtg ggcttgcaat tcagccatca ccctctcttc aatcaagaac
     2281 aagtcctgtg tgccaggctg ctccagctct gtgagtcttt ccaggacaga cagaagcaga
     2341 gcttatcaca gttgctctac gagaagctga gagccctgaa ggatgctacc aaattagcaa
     2401 gcaaaaaccc agaatcaagc cagttcacca agaaatcatt acaagattat tatcaacaga
     2461 taagcgacac agagcagctg tatgatgcag aaagggaaaa ggaccactgc ctgttgcaca
     2521 gtgtctccca gacttggaaa cagataaaat ctctccgaca aaagcaggga ttcacaagca
     2581 ccccagtgaa gctgcagttt cataggataa aaatgaacac gtgggatgag cagaaccaag
     2641 tgggaatgtc agagggaccc ggggacgaaa gtgaagaaac gccatttcca aaggaagacc
     2701 cccaggagac tctctcccat ccagcctcag accctgaagg attggaagct gaaagaagaa
     2761 agccaatcac tctggcgccg cagctttctt tcacagcaga actgacaaac atatccaagt
     2821 gttccttata tgagcaaaag aggagagcca aaatgcagaa gcttaaatac ttcatcaaaa
     2881 tattttacaa tgataaacag gtttcctgca cctcagtatc tcccctacag ttagatttta
     2941 aagtcatgtt tcaacaaatt tttaacattc agctgatgta ttggcccgag acgatctgct
     3001 tggaggttta tgaaataaga aaaaggtcaa ctttactggt taaaatgtat ctgcctttac
     3061 ctaacaagac agagctgaaa ggcaagactg ccctggaata tacagaattt agttctgata
     3121 aactggtcat acctatggac ggaggcgtag gaagcaatgt gccttttaat ctcgaggaga
     3181 gtgagaatga agaactgtgc cttttaacct cagggaaact tagctactct ctctcctggg
     3241 ccttagatga aaatgggatg cctttgacac ccgtgtcaca gtcactgaac tctgcatact
     3301 gcagtgtgct aagaaatgtt gacgcgagag gtgttcctgg actcccgtgg atcgtgaact
     3361 cacaaaagct ttgtgactgg gcagatgaca tcaggattga cccaaataat ccagagtatt
     3421 cagatataac agaactgatt atgtatttga gacacaaagg acaggaaatc cccaaatatt
     3481 tccgtcttga tcagttgcaa gatgaattta actttgtgtc tgaggaagaa atgaaaagga
     3541 gcaaacgctt ccagctgttg gagctgagaa atgcaggcca gctggatctc ttcctcctgc
     3601 agcagatgcc cctctacgac aacgagattc cagacatagt cttccaggag tttgaaagtc
     3661 aagcacagaa ggatgtgtcc atttcagatg tgaactctat cactgcacaa aggattaatt
     3721 ctgtcaattt tctgagaaag gtgagaaggt tgatcatgaa aaaaatcgtc aaagtcagca
     3781 aatttaactt gtcagatatt gtggccgact atgaagaaat tgtatctaca agccaattga
     3841 cagatgcgct ttgtaagttc attgaaccac gaaggaagtt aaaacctcag aggaaagaaa
     3901 gaagaaaagt cacagcccag agcatctctg atggcgatat caagattctc gtcaggatcc
     3961 tgagggccta caacattcct accagaaaaa caacatcgta tagaacttgg agtatgccta
     4021 cttacctgag ctcatccatg tcttacctca gatatcaaaa tgaagccaaa cttgtaccct
     4081 cgaatgaagt cataaatgag gatactgtac accctttcat agaagtttcc tttcaacata
     4141 ctgtatatca aaccaacatt gcaaatggat ctcatccatg ctggaatgaa gaaatcaagg
     4201 tagattttat ctcgccagga cacgattaca gtttctctag tctatctaag ataaaagaca
     4261 acatacacat caacgttttt gatgaagtgg tgattgaaaa acatgaggac cattgtctca
     4321 agagctgcag tgcccactca tacatacaga agaactggct gggctccatc agcttccctt
     4381 tctcagccct tctgcaacag cctgagatta gcgggacatt tcaagtgaac atcccaccca
     4441 ttttgctggg gtacacctgg agtaacactt atgtctctcc tagagaagac tgcagtggac
     4501 agaaccccaa agaatgtacc ttcctaaaca tttttgctac gattgaacct cagatatcat
     4561 acgtcatgta caaccccaaa gtagatgagt tttcagatca aatagacatt ttacagcgag
     4621 cacagacttt taccaggaac tgtaaggcca tgtttcccag tcggagagtc atggcgactg
     4681 ttttcaatgg tgaagggatg caaatcttag tcacaagata tatcaaggca ttgaatccac
     4741 ctcagcaact tctggatata tttcttcacg actcaaatgc aacacttgac ctcatcgccc
     4801 ggtttgtatc tctgattcct tttgcggcag agacactgga tgaaaacgat ggtgctgaca
     4861 tatggatgac atctgagtgc tgcattagtt tggctattgg aagcaaagaa gaacacgcca
     4921 tacttctctg taatttcttt ctgtactttg ggaagaaggc attggtgatc ctgggaacct
     4981 cagtactaga aggccatgtg gcttatgtat taactcaaga gactggcgag tgtttgcttt
     5041 ggaatccatc gacggggcaa tgttataagc agttcgaccc attttgccct ttgcaaagtg
     5101 tagattgttt gttcaacgat aaaaatgtct ggtttaatat tcaacaaaat aatacaccaa
     5161 tggctgtaca ttttgactgt tcaaaagaaa gcttctggaa acagctgctt ccaaaaaact
     5221 tccaatggac caaagcccag agtgtacagc ctgaagaaat agtttacttg gataccaata
     5281 aaagcatggt agaagatcta aagagcagga tagaaagagc actgaaatgt aagatgatgg
     5341 aatggcggcc taaacaccca acacgctgga atcgacagtg cacttctgtt ctacggcaaa
     5401 tccttcctaa actagagttt tacacgggaa gctttgcttc gtttgaagac agtgagttgg
     5461 aaaggctgct acagttttat tgggtcacag gatttcccat ccagatgccc tacacagatg
     5521 tccaggcagt cattgatgcc gtgtaccaga caggagttca ctcctctgaa tttccccaga
     5581 cggaatttgc attggctgtg tacattcatc catacccaaa caacatttta tctgtgtgga
     5641 tctatttggc ttccttagcc cgacatcagt gaaatggaag aggggaaaag acaaagagca
     5701 ctgtgt
//
