LOCUS       XM_008768485            2619 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus chromobox 4 (Cbx4), mRNA.
ACCESSION   XM_008768485
VERSION     XM_008768485.3
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051345.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Jan 25, 2024 this sequence was replaced by
            NM_001427455.1.
            
            On Jan 21, 2021 this sequence version replaced XM_008768485.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2619
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="10"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..2619
                     /gene="Cbx4"
                     /note="chromobox 4; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 1 EST, 4 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 243 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:501403"
                     /db_xref="RGD:1587243"
     CDS             228..1883
                     /gene="Cbx4"
                     /codon_start=1
                     /product="E3 SUMO-protein ligase CBX4"
                     /protein_id="XP_008766707.2"
                     /db_xref="GeneID:501403"
                     /db_xref="RGD:1587243"
                     /translation="MELPAVGEHVFAVESIEKKRIRKGRVEYLVKWRGWSPKYNTWEP
                     EENILDPRLLIAFQNRERQEQLMGYRKRGPKPKPLVVQVPTFARRSNVLTGLQDSSAD
                     NRAKLELGTQGKGQGHQYELNSKKHHQYQPHGKERSGKPPPPGKSGKYYYQLNSKKHH
                     PYQPDPKMYDLQYQGSHKEAPSPTCPDLGAKSHPPDKWAHGAAAKGYLGAVKPLGGGA
                     GAPGKGSEKGPPNGLTPAPKEAVAGNGIGGKMKIVKNKNKNGRIVIVMSKYMENGMQA
                     VKIKSGEAAESEARSPSHKKRAAEERHPQADRTFKKAAGASEEKKAEVPCKRREEEAL
                     VSGDPQPQDLGSRKLSPTKEAFGEQPLQLTTKPDLLAWDPARSSHPPAHHHHHHHHHH
                     HHHTVGLNLSHARKRCLSETHGEREPCKKRLTARSISTPTCLGGSPVSEHPANVSPTA
                     ASLPQPEVILLDSDLDEPIDLRCVKMRSDAGEPPSTLQVKPEAPAVAAVVAPATAAEK
                     PPAEAQEEPAEPLSEFKPFFGNIIITDVTANCLTVTFKEYVTV"
ORIGIN      
        1 agttctcgtg ccgcggcggc ccgggctcag ttgtctgagc gagagcgagc agagagccgg
       61 cgggtgcggg cagcggcggc ggccaggctg ttgaggggcg agtggcggcg gcgggggccg
      121 ggcgcgtggc gaggtccgcg cgcaggaccg catcggggcg ccggcgggag ccagctgtgt
      181 ctgcagccgg gccggccgct tgcgcccctg cgtgcttgga ttcggccatg gagctgccag
      241 ctgttggcga gcacgtcttc gcggtggaga gcatcgagaa gaagcggatc cgcaagggca
      301 gagtggagta tctggtgaaa tggagaggct ggtcccccaa atataacacg tgggaaccag
      361 aggagaacat cttggatccc cgtctgctga ttgccttcca gaacagggaa aggcaggagc
      421 agctgatggg atatcgaaag agagggccca agcccaaacc gctggtggtg caggtaccca
      481 cctttgcccg ccgctccaat gtcctgactg ggcttcaaga ctcctccgct gacaaccgtg
      541 ccaagctgga gttgggcacg cagggcaagg gccaggggca ccagtatgag ctcaacagca
      601 agaagcacca tcagtaccag ccccacggca aggagaggtc cggtaagccg cccccaccag
      661 ggaagagcgg caagtattac tatcagctaa atagcaaaaa acaccacccc taccagccag
      721 accccaaaat gtacgacctg cagtaccagg gcagccacaa ggaggcaccc agccccacct
      781 gcccagacct gggcgccaag agccaccctc ctgacaagtg ggcccacgga gctgcagcca
      841 aaggctacct cggggcagtg aagcccttgg ggggaggggc aggagctcca ggcaagggct
      901 cggaaaaggg ccccccgaat ggcttgacac cagcccctaa ggaggcggtg gccggtaatg
      961 gcattggggg caagatgaaa atcgtcaaga acaagaacaa gaatgggcgc atcgtgatcg
     1021 tgatgagcaa gtacatggag aacggcatgc aggccgtgaa gatcaagtcg ggcgaggcag
     1081 ccgagagcga ggcgcgctcc cccagccaca agaaacgtgc tgccgaggag cgccatcccc
     1141 aggccgacag gacttttaaa aaggcagccg gtgcttctga ggagaagaaa gccgaagtgc
     1201 cctgcaaacg cagggaggag gaggctctgg tgtcggggga cccccagccc caggacctag
     1261 ggtctcgaaa gctctccccg accaaggagg cctttggtga gcagccgctg cagctcacca
     1321 ccaagccaga cctgctggcc tgggacccag ccaggagctc acacccgccc gcccaccacc
     1381 accatcacca ccaccatcac caccaccacc atacggtggg cctgaacctc tcccatgcgc
     1441 gcaagcgctg cctctccgag acccatggcg agcgtgagcc ctgcaagaag cggctgaccg
     1501 cccgtagcat cagcacgccg acctgcctgg ggggcagccc ggtctctgag caccctgcca
     1561 acgtatcccc caccgcagcc tctcttccgc agccggaggt catccttttg gactcagacc
     1621 tggatgagcc catagacttg cgctgtgtca agatgcgcag cgatgccggg gaaccgccca
     1681 gcaccctcca ggtgaagccg gaggctccgg cagtggcggc agtggtggcg ccggccactg
     1741 cagcggagaa gcctcccgct gaggcccagg aggagccagc ggagcccctg agtgaattta
     1801 agcccttctt tgggaatata attatcactg acgtcacggc gaactgcctc accgtcactt
     1861 tcaaggaata cgtgacggtg tagtgggaag gagtcgcgcc cgctgggact cccgcacctg
     1921 caatctcgca gaggttccca aggagaggac tccccagtcg cggtggccag gcccctgctc
     1981 actccctggg atcccgactg agctgtccat ctctcactct ccttccacgt ggtgcctgcg
     2041 gtctcgccgc cacctccccc ttccctatag gagacccgag ccctccctgt ggaccaccag
     2101 aactgacccc gcagccccga ggcggtctca gctatagtat tatattttaa ccgtgctaac
     2161 tgtcaagtgc tgactctact ccggtttgta cgtggtgtta ttcttgaaat gtattgtttg
     2221 agctcagaag gcccgactac ccccctcggg ctgatatata tatatattta tttgtaggta
     2281 tttatatatt gaaatataaa acctagattt atggagtttc ctctagatca tgttatattc
     2341 tatatcagac agactatttt cagttggcct tttcctttcc ccttcattca gtattttgat
     2401 ttttatttcc tcttctccag gaactgcggc accagtaacc ttggtatata ttttttgata
     2461 ctgtacacat gggtgtgttg tttctatgtg caaaaaaaaa agtttgttaa aaggctaaag
     2521 agctctctag aacctgctgc tatagaaatg tctgaactat aagcttccaa ttattacctg
     2581 cttgaatgta aatattaaat ggagatgttg aaggtgcaa
//
