LOCUS       XM_006247234            1270 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus chromobox 1 (Cbx1), transcript variant
            X2, mRNA.
ACCESSION   XM_006247234
VERSION     XM_006247234.4
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051345.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_006247234.5.
            
            On Jan 21, 2021 this sequence version replaced XM_006247234.3.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1270
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="10"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..1270
                     /gene="Cbx1"
                     /note="chromobox 1; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 4 ESTs, 2 long SRA reads,
                     and 100% coverage of the annotated genomic feature by
                     RNAseq alignments, including 19 samples with support for
                     all annotated introns"
                     /db_xref="GeneID:360609"
                     /db_xref="RGD:1310714"
     CDS             60..641
                     /gene="Cbx1"
                     /codon_start=1
                     /product="chromobox protein homolog 1 isoform X1"
                     /protein_id="XP_006247296.1"
                     /db_xref="GeneID:360609"
                     /db_xref="RGD:1310714"
                     /translation="MGKKQNKKKVEEVLEEEEEEYVVEKVLDRRVVKGKVEYLLKWKG
                     FSDEDNTWEPEENLDCPDLIAEFLQSQKTAHETDKSDGGKRKADSDSEDKGEESKPKK
                     KKEEALPIWFLQSEKPRGFARGLEPERIIGATDSSGELMFLMKWKNSDEADLVPAKEA
                     NVKCPQVVISFYEERLTWHSYPSEDDDKKDDKN"
ORIGIN      
        1 acagaagtac atatacatgc tgcagtgtca cccttcacac cagaaagctg gcgggtacta
       61 tggggaaaaa gcaaaacaaa aagaaagtgg aagaggtact agaagaagag gaagaggaat
      121 atgtggtgga aaaagttctt gatcggcgag ttgtcaaggg caaggtggaa tatcttctaa
      181 agtggaaagg tttctcagat gaggacaaca cttgggagcc agaagagaat ctggattgcc
      241 ctgaccttat tgctgagttt ctacagtccc agaagacagc tcatgagacg gataaatcag
      301 acggaggcaa gcgcaaagct gattctgatt ctgaagataa aggagaggaa agcaaaccaa
      361 agaagaagaa agaagaggct ctacccatct ggtttttaca gtcagaaaag ccacgaggct
      421 ttgcccgggg tctggagcca gagcggatta ttggagctac tgactccagt ggagagctca
      481 tgttcctgat gaaatggaaa aactctgatg aggctgacct ggtccctgcc aaggaagcca
      541 atgtcaagtg cccacaggtt gtcatatcct tctatgagga aaggctaacg tggcattcct
      601 acccctcaga ggatgatgac aaaaaagacg acaagaatta gccctgttga gtaccagccc
      661 ctgtcacctc tgactgtggg tttccagggg gagggaagga gctgtacttg tcttgacacc
      721 attgaggtgg cttgagaaga tgtcctttga agagccagca tagtttctgt gtcctgcagc
      781 agcccaagtg ctttaaattg ttcacactgt atagtttgca cacccatccc aggggagggg
      841 aaagggtaag tgtttcaagg ctctgttctg cgctttacta aggaaggaac aggccttcca
      901 tggaggacag aacccgcaga actgggatgt gggaaagcaa agatactgtc gatcttcaaa
      961 gagcatctcc acaacccact gccttcttcc caatagtgtt aactgcattt ttacagccta
     1021 gcatgtgtgt agttttttgg ctattactgg tatattaatt gggggtggga gggttggggc
     1081 agggaggaag ggagatgggt agaatcattt tgattaaaat ttggagcctg attggggaaa
     1141 tggtgaaaca gtagaacagt taactaataa attggttcta tgtccagaat attttgcctt
     1201 ttcaaaaaat tgtcattggc accataaata aggactatga gagactgttt aaaaaaaaaa
     1261 aaaagaaaag
//
