LOCUS       XM_039078984            3165 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus CACN subunit beta associated
            regulatory protein (Cbarp), transcript variant X2, mRNA.
ACCESSION   XM_039078984
VERSION     XM_039078984.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051342.1) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039078984.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3165
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="7"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..3165
                     /gene="Cbarp"
                     /gene_synonym="Dos"
                     /note="CACN subunit beta associated regulatory protein;
                     Derived by automated computational analysis using gene
                     prediction method: Gnomon. Supporting evidence includes
                     similarity to: 1 mRNA, 44 ESTs, 1 long SRA read, 4
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 112 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:314622"
                     /db_xref="RGD:1307185"
     CDS             314..2416
                     /gene="Cbarp"
                     /gene_synonym="Dos"
                     /codon_start=1
                     /product="voltage-dependent calcium channel beta
                     subunit-associated regulatory protein isoform X2"
                     /protein_id="XP_038934912.1"
                     /db_xref="GeneID:314622"
                     /db_xref="RGD:1307185"
                     /translation="MQPTATMATAAATTATVALTTSWDNATNRPTAEPDPILDNYVLL
                     VVVMSLFVGGTLVVLSGVLLLCKRCWEVHQRFNRAMEETEKTTTTYLDNGTHPIQDPD
                     CRGEDPEGQDTETERFLATTSTGRRVSFNEAALFEQSRKAQDKGRRYTLTEGDFHHLK
                     NARLTHLHLPPLKIATIHECDSGEASAAATPHPHPASTPKDSLAIFQPPGKSLTGHSV
                     GPSSALPGDPYSSVDFSEISPSASSDSGEGTSLDAGTRGTKAAGPETAPGEMGTGSSG
                     AGTVLQFFTRLRRHASLDGASPYFKVKKWKLESSQRASSLDTRGSPKRHHFQRQRAAS
                     ESMEQEGDIPHADFIQYIASAGDSVAFPPPRPFLASPTSPPPTLGRLEAAEAAGGGSP
                     ETPPEHGISLGPEHAQQQDPQQEQDAEHAQCSYRDLWSLRASLELHAATASDHSSSGN
                     DRDSVRSGDSSGSGSGGGGAAPAFPPPPESPPALRPKDGEARRLLQMDSGYASIEGRG
                     AGDEVSELPAPARSPPRSPRAWPRRPRRDYSIDEKTDALFHEFLRHDPHFDDAPRHRA
                     RAHPHTHARKQWQQRGRQHSDPGGARVATPPGATRPTRAPLRRGDSVDCPPEGRAPPI
                     TGDDPSIPVIEEEPGGGGSGCPGSGLCVEPAGALLDKLAASLDERLFSPRLAEPVASS
                     PVLIVAAAAPTSPDHSPA"
ORIGIN      
        1 aagggaaggg gaggcggtgg ccatcacatc gccagccaga cgcggcggcg agagcggcgg
       61 gggcggtcag gctgcgggac cgggcggtta ccgggtacac agagccaggg gccggagcgg
      121 gcgcatcgcc aacgcgatca cgtgcgcagc cccacctctc ctgcgtgcct cctccgcgcg
      181 ctgctctccc cattcataaa ttctccgtcg gctccgcggc caccgagctc cagagccaac
      241 cgggagagcc gtgttatctg ccgcccgccc tcccgccgcc catgggccgc acgccccggc
      301 gctgagcctc aaaatgcagc ccacggccac catggccaca gcggccgcca ctactgccac
      361 ggttgccctg acgacttcgt gggacaatgc caccaaccgc cccacggcgg agcctgaccc
      421 catcttggac aactatgtgc tgctggtggt ggtgatgtcg ctgttcgttg gaggcacgct
      481 ggtggtgctg tctggcgttc ttctgctctg caaacgctgc tgggaggtgc accagcgctt
      541 caacagggcc atggaagaaa cagaaaagac caccactacc tacctggaca acggcaccca
      601 ccccatacaa gaccccgact gcagggggga agaccccgag ggccaggaca ccgaaacaga
      661 gcgcttccta gccaccacct ccaccggtcg ccgcgtgtcc ttcaacgagg ctgccctgtt
      721 tgaacagagc cgcaaggctc aggacaaggg ccgccggtac accctgacag aaggggattt
      781 ccatcacctc aagaatgccc gcctcaccca cctccaccta ccgcctctca aaatcgctac
      841 catccatgag tgtgactcgg gtgaggccag tgctgcggcc acgccccacc cccacccggc
      901 ttccaccccc aaggacagct tggctatatt ccagccccct gggaagtccc tcactggcca
      961 ctcggtgggc cccagctctg ccctcccagg tgatccctac agctccgtgg acttctcgga
     1021 gatcagcccc tcggcctcca gtgactctgg ggagggcacc tcgttagatg cgggtacccg
     1081 gggtaccaag gctgctgggc ccgagacagc acctggggag atgggcacag gctcctccgg
     1141 ggctggcact gttttgcaat tcttcactcg gctacgccgc catgccagcc tggatggagc
     1201 cagcccctac ttcaaggtca agaaatggaa gttggagtcc agccagagag cgtccagtct
     1261 ggacacgaga ggttccccga agcggcacca ctttcagcga cagcgggcag ccagcgagag
     1321 catggagcag gagggggata tcccccatgc tgacttcatt caatacattg ccagcgcagg
     1381 cgactcggtg gccttcccac ccccccgccc ctttctggcc agccccacca gcccgccccc
     1441 cactctcggc aggctagagg cagctgaggc ggcgggagga ggaagccccg agactcctcc
     1501 ggagcatggc atcagtttgg ggcccgagca tgcgcagcag caggacccgc agcaagagca
     1561 ggacgccgag catgcacagt gcagctaccg tgatctgtgg agccttcgtg cttcgctcga
     1621 gctccacgca gccactgcat cagaccacag cagtagcggc aatgaccgtg actcagtgcg
     1681 cagcggcgat agctcgggct ccggttccgg gggtggaggc gcagcacccg ccttcccgcc
     1741 ccctcctgag tctccgcctg ccttgcggcc taaggacggc gaagcccgac gcctgttaca
     1801 gatggacagt ggctacgcga gcatcgaggg acgtggagct ggcgatgaag tttctgaact
     1861 tcctgctcca gctcggagcc ctccccgcag cccgcgagcc tggccacgca ggccgcgccg
     1921 cgattatagc atcgatgaga agacggacgc tcttttccat gaattcctgc gccacgatcc
     1981 tcattttgat gatgctccaa gacaccgcgc acgtgcgcat cctcacactc atgcgcggaa
     2041 gcaatggcaa cagagaggcc ggcagcacag cgaccccgga ggtgcacgcg tggccacgcc
     2101 ccctggggct acccgcccca cacgtgcccc cttacgccgt ggggatagtg ttgattgtcc
     2161 tcctgaaggc cgtgcgccgc ccatcaccgg tgatgaccca tccattcccg tcattgagga
     2221 ggagcctggt ggtggaggca gtggttgccc aggctctggg ttatgtgttg agcccgccgg
     2281 ggcactgctg gacaaactag cagctagcct cgacgagaga ctcttctctc cccgtcttgc
     2341 tgagccagtt gcctcatccc cggtgctgat tgtcgctgct gccgccccta catcccctga
     2401 ccacagccca gcctaagctc tgtgtactgg acctgcctct cggctgcttt gccggcggca
     2461 cgtggggccg ctgtgggaat ggtggcgaca gcgggagcaa cctgaggttg ctgtgcatgg
     2521 gtacgcggcc caaatcccaa gtgtgtacaa ggagtgtccc ctcgggcact tagcagggtg
     2581 cagtgggcct ccggatgcac aaggcctccg gacccaggct cagctgcagg gaggatgaag
     2641 atcttggatt ctcaagtcca tatacggttg acccccggca cccagcctct ggccacagat
     2701 gcgggtggag caggttctga ggtgcgcgtg cagcctccct ccaggatcag ccgaacctcc
     2761 acactcgtga gcacgtgctg gcagtgccac tgcatgcgtg aacctactgg aggggaagtg
     2821 actgcggggc actgaggatc agagaggaac acgcgcccca gatccttaat cctttcccct
     2881 gtccatggta tgcactttgt agcaactgta cctttcctct ctgagcaata accgactgcg
     2941 cctgctcgct ctctgcatgt gcacaggctc cagcctgtcc catccctccc cacgagcttt
     3001 gggctttaaa cacagagaca gaacagcccg gtggcagctt caagtttccc aagctttatt
     3061 tattgccaaa agattgggca gcctcgccat gagtgcctgc ccactccctg ccctgcgccc
     3121 tgtggttggt cgtgttgtct ggttgatcat aaatgtctct gcata
//
