LOCUS       NM_001170340            3829 bp    mRNA    linear   ROD 31-MAR-2024
DEFINITION  Rattus norvegicus cation channel sperm associated auxiliary subunit
            gamma (Catsperg), mRNA.
ACCESSION   NM_001170340 XM_218462
VERSION     NM_001170340.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 3829)
  AUTHORS   Wang,H., Liu,J., Cho,K.H. and Ren,D.
  TITLE     A novel, single, transmembrane protein CATSPERG is associated with
            CATSPER1 channel protein
  JOURNAL   Biol Reprod 81 (3), 539-544 (2009)
   PUBMED   19516020
  REMARK    GeneRIF: The mouse Catsperg, which is highly related to this rat
            protein, has been identified as a component of the sperm-associated
            cation channel (CATSPER) protein complex.
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000001.1.
            
            On Dec 19, 2009 this sequence version replaced XM_218462.4.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            RNAseq introns :: mixed sample support SAMEA5760383, SAMEA5760386
                              [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-18                JAXUCZ010000001.1  93646825-93646842   c
            19-302              JAXUCZ010000001.1  93641656-93641939   c
            303-356             JAXUCZ010000001.1  93641503-93641556   c
            357-501             JAXUCZ010000001.1  93637687-93637831   c
            502-628             JAXUCZ010000001.1  93637443-93637569   c
            629-701             JAXUCZ010000001.1  93637218-93637290   c
            702-857             JAXUCZ010000001.1  93635844-93635999   c
            858-1029            JAXUCZ010000001.1  93634849-93635020   c
            1030-1167           JAXUCZ010000001.1  93633686-93633823   c
            1168-1227           JAXUCZ010000001.1  93631960-93632019   c
            1228-1335           JAXUCZ010000001.1  93631733-93631840   c
            1336-1386           JAXUCZ010000001.1  93630644-93630694   c
            1387-1516           JAXUCZ010000001.1  93630423-93630552   c
            1517-1628           JAXUCZ010000001.1  93629176-93629287   c
            1629-1787           JAXUCZ010000001.1  93628780-93628938   c
            1788-1897           JAXUCZ010000001.1  93628578-93628687   c
            1898-2111           JAXUCZ010000001.1  93624684-93624897   c
            2112-2174           JAXUCZ010000001.1  93623893-93623955   c
            2175-2373           JAXUCZ010000001.1  93623602-93623800   c
            2374-2492           JAXUCZ010000001.1  93623386-93623504   c
            2493-2573           JAXUCZ010000001.1  93623133-93623213   c
            2574-2630           JAXUCZ010000001.1  93622994-93623050   c
            2631-2787           JAXUCZ010000001.1  93619310-93619466   c
            2788-2851           JAXUCZ010000001.1  93619068-93619131   c
            2852-2947           JAXUCZ010000001.1  93618870-93618965   c
            2948-3037           JAXUCZ010000001.1  93618550-93618639   c
            3038-3130           JAXUCZ010000001.1  93617112-93617204   c
            3131-3230           JAXUCZ010000001.1  93616906-93617005   c
            3231-3479           JAXUCZ010000001.1  93616559-93616807   c
            3480-3829           JAXUCZ010000001.1  93616209-93616558   c
FEATURES             Location/Qualifiers
     source          1..3829
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /map="1q21"
     gene            1..3829
                     /gene="Catsperg"
                     /gene_synonym="Catsperg1; RGD1310942"
                     /note="cation channel sperm associated auxiliary subunit
                     gamma"
                     /db_xref="GeneID:292767"
                     /db_xref="RGD:1310942"
     exon            1..18
                     /gene="Catsperg"
                     /gene_synonym="Catsperg1; RGD1310942"
                     /inference="alignment:Splign:2.1.0"
     exon            19..302
                     /gene="Catsperg"
                     /gene_synonym="Catsperg1; RGD1310942"
                     /inference="alignment:Splign:2.1.0"
     CDS             30..3479
                     /gene="Catsperg"
                     /gene_synonym="Catsperg1; RGD1310942"
                     /note="cation channel sperm-associated protein subunit
                     gamma; cation channel, sperm-associated, gamma 1; catsper
                     channel auxiliary subunit gamma 1; cation channel
                     sperm-associated protein subunit gamma 1-like"
                     /codon_start=1
                     /product="cation channel sperm-associated auxiliary
                     subunit gamma precursor"
                     /protein_id="NP_001163811.1"
                     /db_xref="GeneID:292767"
                     /db_xref="RGD:1310942"
                     /translation="MVFWPAMSPVSPVWPRKPNLCAFWVLRLVLLLSLKSRTEGTLQN
                     CHWLVVLNKFENVGFHLSKDRFLEHQPVDTVSEVFSKLVDSPVDPQEKYLSFPYYLQI
                     NFTCPGEDSEVLARKGHLLGMKPMIQIDYIHSVNFYRWKPENLQILLEAAPMLSRGDC
                     HAEAMCILNWYTPMPLKNGSVVASVEVYTNGIGPFIPRKRFFVNMNGFLRKDASGAPV
                     FTVGYESLSLKPSHFRLSKSRPLWYTMDHTPVFILGGFDNEKAILLSDSNFHDFVLLE
                     LSIDSCWVGSYYCPILGFSATIHDAIATESTLFIRQNQLVYYFTGTYTTLFDKSRGSR
                     GWVRVLSSECIKKLCPVFVGGNGSEYILALTTGKNEGYIHIGTITDGLVSFQMVPDGW
                     SICEKLPGLNCTIEWAVYIADERNLLLLVKTDSVQFYLVNFNLELKTLHILYKIPEFI
                     PEAQNLDFLVLLGTETYTDTPMIPQGLYFNTLNNVLYIWGNFILQSYNREHFIFLADF
                     PKESTIKYMLNSYKGHITFVTEDEEIWYFLEGGYDVYRIVPSQGWNTYFNLQKLEKSP
                     LYSNDETLVSLFYEKNHLYELVYLFDNGKERLVRRFLPVGKLMEYDLPKPFKIGSQRE
                     NKIISFEYICPFKEIHLLDVPQKQHVERKESYLALPPLVSESSGFHNNYTLAVYQGLV
                     YYLLWLHAKYNKPYADPVHDPTWRWWQHKIVYKDYYFYLFSNRLTAEGMYINMNAYQK
                     LYNLSSDYSMADFVFLDKGNWFSITAALLSHQDTFTSADSPGAGLEVDRKLAVSVILA
                     DPECLSSSVTQEIHLNRNLLLFKIKITDKRKCSEQGITGRNLKKTSMLIKVLGASGKC
                     FQATTLDTIIRGFLMTKIFIGCPPGKRLAFDVSYTVMHSQKINKHYLDCVVKDPEMPC
                     FLFRDLFQPFFLVQDLVTGDSGSFLGSYVLKVVGGGRTEETIKDYTEEEIFRYNSPLD
                     TTKSLIWKTKAERTTSDNKFYIMSHKSPGIEWLCSENSPCYDIIPTDIFPPEFFFKLL
                     VSNRGVDDSTYCDYQLTFIVHIHGLPLSSKRSSFTFVVSSTIFLGLVVLYILFCLLWP
                     HISRAWASLRWRINNIMASESYFTYATSTAGFSLQSHSSEESFKGPPRVDSKEGNVQA
                     KKA"
     exon            303..356
                     /gene="Catsperg"
                     /gene_synonym="Catsperg1; RGD1310942"
                     /inference="alignment:Splign:2.1.0"
     exon            357..501
                     /gene="Catsperg"
                     /gene_synonym="Catsperg1; RGD1310942"
                     /inference="alignment:Splign:2.1.0"
     exon            502..628
                     /gene="Catsperg"
                     /gene_synonym="Catsperg1; RGD1310942"
                     /inference="alignment:Splign:2.1.0"
     exon            629..701
                     /gene="Catsperg"
                     /gene_synonym="Catsperg1; RGD1310942"
                     /inference="alignment:Splign:2.1.0"
     exon            702..857
                     /gene="Catsperg"
                     /gene_synonym="Catsperg1; RGD1310942"
                     /inference="alignment:Splign:2.1.0"
     exon            858..1029
                     /gene="Catsperg"
                     /gene_synonym="Catsperg1; RGD1310942"
                     /inference="alignment:Splign:2.1.0"
     exon            1030..1167
                     /gene="Catsperg"
                     /gene_synonym="Catsperg1; RGD1310942"
                     /inference="alignment:Splign:2.1.0"
     exon            1168..1227
                     /gene="Catsperg"
                     /gene_synonym="Catsperg1; RGD1310942"
                     /inference="alignment:Splign:2.1.0"
     exon            1228..1335
                     /gene="Catsperg"
                     /gene_synonym="Catsperg1; RGD1310942"
                     /inference="alignment:Splign:2.1.0"
     exon            1336..1386
                     /gene="Catsperg"
                     /gene_synonym="Catsperg1; RGD1310942"
                     /inference="alignment:Splign:2.1.0"
     exon            1387..1516
                     /gene="Catsperg"
                     /gene_synonym="Catsperg1; RGD1310942"
                     /inference="alignment:Splign:2.1.0"
     exon            1517..1628
                     /gene="Catsperg"
                     /gene_synonym="Catsperg1; RGD1310942"
                     /inference="alignment:Splign:2.1.0"
     exon            1629..1787
                     /gene="Catsperg"
                     /gene_synonym="Catsperg1; RGD1310942"
                     /inference="alignment:Splign:2.1.0"
     exon            1788..1897
                     /gene="Catsperg"
                     /gene_synonym="Catsperg1; RGD1310942"
                     /inference="alignment:Splign:2.1.0"
     exon            1898..2111
                     /gene="Catsperg"
                     /gene_synonym="Catsperg1; RGD1310942"
                     /inference="alignment:Splign:2.1.0"
     exon            2112..2174
                     /gene="Catsperg"
                     /gene_synonym="Catsperg1; RGD1310942"
                     /inference="alignment:Splign:2.1.0"
     exon            2175..2373
                     /gene="Catsperg"
                     /gene_synonym="Catsperg1; RGD1310942"
                     /inference="alignment:Splign:2.1.0"
     exon            2374..2492
                     /gene="Catsperg"
                     /gene_synonym="Catsperg1; RGD1310942"
                     /inference="alignment:Splign:2.1.0"
     exon            2493..2573
                     /gene="Catsperg"
                     /gene_synonym="Catsperg1; RGD1310942"
                     /inference="alignment:Splign:2.1.0"
     exon            2574..2630
                     /gene="Catsperg"
                     /gene_synonym="Catsperg1; RGD1310942"
                     /inference="alignment:Splign:2.1.0"
     exon            2631..2787
                     /gene="Catsperg"
                     /gene_synonym="Catsperg1; RGD1310942"
                     /inference="alignment:Splign:2.1.0"
     exon            2788..2851
                     /gene="Catsperg"
                     /gene_synonym="Catsperg1; RGD1310942"
                     /inference="alignment:Splign:2.1.0"
     exon            2852..2947
                     /gene="Catsperg"
                     /gene_synonym="Catsperg1; RGD1310942"
                     /inference="alignment:Splign:2.1.0"
     exon            2948..3037
                     /gene="Catsperg"
                     /gene_synonym="Catsperg1; RGD1310942"
                     /inference="alignment:Splign:2.1.0"
     exon            3038..3130
                     /gene="Catsperg"
                     /gene_synonym="Catsperg1; RGD1310942"
                     /inference="alignment:Splign:2.1.0"
     exon            3131..3230
                     /gene="Catsperg"
                     /gene_synonym="Catsperg1; RGD1310942"
                     /inference="alignment:Splign:2.1.0"
     exon            3231..3829
                     /gene="Catsperg"
                     /gene_synonym="Catsperg1; RGD1310942"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gttttaacca agtgactggt tctagctaca tggtgttctg gccagccatg tcccctgtca
       61 gccctgtgtg gccgagaaaa ccaaacctat gcgcattctg ggtactgcgg ctagtgctat
      121 tgctgtcgct gaagtcgaga acggaaggta ctttacagaa ttgccactgg cttgttgtcc
      181 tgaacaagtt cgagaatgta ggctttcatc tcagcaagga tcgatttctg gaacaccagc
      241 ctgtcgatac agtgtctgag gtgttcagta agttggtaga ctcgccagtt gatccgcaag
      301 agaaatattt gagctttcct tactacctgc aaatcaactt tacgtgtccg ggagaggata
      361 gcgaggtgct ggcccgaaag ggccacctgt tggggatgaa acccatgatc caaatcgact
      421 acatacactc agtcaatttc taccgttgga agcccgagaa tctgcagatc ttgttggagg
      481 ctgctccaat gctcagcaga ggggactgcc acgcggaggc catgtgcatc ctgaactggt
      541 acacacccat gcccttgaaa aacggctcgg tggtcgcctc ggtggaagtc tacaccaatg
      601 gcataggacc cttcattccc aggaaaaggt tctttgtaaa tatgaatggc ttcttgagga
      661 aagacgcaag tggtgcaccc gtcttcaccg taggatatga gagcctttct ctgaagccgt
      721 ctcactttag gctctcgaaa tcaagacccc tgtggtacac tatggaccac acacccgtct
      781 tcatccttgg gggctttgat aatgaaaagg ccatcttgct ctctgacagt aatttccatg
      841 actttgttct cttggagctg agtattgata gttgctgggt cggctcctat tactgtccca
      901 ttcttggctt ctcagccact atccatgacg ccattgccac cgagagcacg ctcttcattc
      961 gacagaacca gctcgtctac tatttcacag gcacctacac tacgctcttc gacaagagcc
     1021 gcggcagcag aggctgggtt cgtgtcctgt ctagcgagtg catcaagaaa ctgtgcccgg
     1081 tgtttgtcgg tggcaatggt tctgaatata tcctagccct caccactggc aagaacgagg
     1141 gttatattca catcgggacc atcacagatg gcctcgtgtc cttccaaatg gtgccggatg
     1201 gctggtcaat atgtgaaaag ttaccaggtt tgaactgcac cattgagtgg gctgtataca
     1261 ttgccgatga gaggaacctg ctgctgttag taaaaactga ctctgtgcag ttttacctag
     1321 tcaacttcaa tttagagctc aagactctgc acattctcta caaaatacca gagtttatcc
     1381 ctgaagctca gaacctggac ttcttggtgc tccttggtac agagacttac accgacactc
     1441 ctatgattcc ccagggcttg tacttcaaca cactgaacaa cgtgctgtac atttggggca
     1501 atttcatcct gcaaagttac aatagggaac acttcatttt tctggcggac ttccccaagg
     1561 agtccaccat caaatacatg ctcaactctt acaagggaca tataactttt gtcacagaag
     1621 atgaagagat ctggtacttt ctggaaggtg gctatgacgt atacaggata gtcccatccc
     1681 aaggctggaa cacctacttt aacctgcaga agctggaaaa gtcgcccctc tattcaaatg
     1741 atgagacctt ggtctccctc ttctacgaga agaatcatct ctatgagctg gtgtatcttt
     1801 ttgacaacgg aaaagagcgt ttggtcagga ggttcttgcc tgtggggaag ttgatggagt
     1861 atgacctgcc caaacccttc aaaataggga gccaacggga gaacaagata atctccttcg
     1921 aatacatctg ccccttcaag gaaattcatc tacttgatgt accccaaaaa cagcatgtgg
     1981 aacgcaagga gagctacctt gccctaccgc ctctggtctc tgaatcctcg ggcttccaca
     2041 acaattacac gcttgccgtc tatcaaggcc ttgtctatta cctgctgtgg ctacacgcca
     2101 agtacaataa gccctacgcg gacccagtgc atgatcccac ctggcgctgg tggcaacaca
     2161 aaatagtgta caaggattac tacttttacc tgttcagcaa ccggctgaca gcggaaggca
     2221 tgtatatcaa catgaatgcc taccaaaagc tgtacaacct ctccagcgat tactcgatgg
     2281 ccgactttgt cttcctagac aagggcaact ggtttagcat cactgcagcc ttattgtcgc
     2341 atcaggacac cttcacaagc gctgatagcc caggagccgg tcttgaagtg gataggaagc
     2401 tggcagtgtc tgtgatactg gcggatcctg agtgcctttc atcgtctgtg actcaggaga
     2461 tccatcttaa tcgaaaccta ttgctcttca agattaaaat cacagacaaa aggaaatgct
     2521 ctgaacaggg aataactgga cgtaacctga aaaagacttc tatgttgatc aaggtactgg
     2581 gcgcttcggg gaaatgcttc caagccacaa cccttgacac gatcattcga ggtttcctga
     2641 tgacgaaaat attcatcggc tgtccacctg gcaagcgtct ggccttcgat gtctcctaca
     2701 cagttatgca ttcccagaag ataaacaagc actatcttga ctgtgtggtc aaggaccccg
     2761 agatgccgtg cttcctcttt cgtgacttat tccagccctt cttcttagtc caggacttag
     2821 tgacgggaga ctctggcagc ttcttgggca gttatgtgct gaaggtggtg ggcggtggtc
     2881 gcacagaaga aaccatcaaa gactacacag aagaggaaat cttccgttac aacagcccgc
     2941 tggacacaac gaaaagtctc atctggaaaa ccaaagctga aaggaccacc agtgacaaca
     3001 agttctacat aatgtcccat aagagccccg gaatagagtg gctgtgttcg gagaactccc
     3061 cttgctacga catcatcccc acagacatct ttccacctga attcttcttc aagttgttag
     3121 tgagcaatag aggtgtagac gacagcacat actgtgacta ccagctcacc ttcatagtgc
     3181 acatccacgg gctgccgctc agcagcaaac ggtcctcctt cacttttgtc gtgtcctcca
     3241 ccatctttct aggcttggtg gtcctctaca tcctgttctg cctcctgtgg cctcacatat
     3301 cgagggcctg ggcctcacta cgctggagga ttaacaacat catggcgtcc gagtcctact
     3361 tcacatacgc cacctccact gcgggcttca gcctccagtc ccacagctca gaagaaagtt
     3421 tcaagggtcc ccccagagta gattccaaag aaggcaatgt tcaagctaag aaagcatagg
     3481 tggaggggtt ggggatttag ctcagcggta gagcgcttgc ctagcaagcg tgaggccctg
     3541 ggttcagtcc ccagctccgg ggggaaaaaa aaaagaaaaa aaaaaagaaa aaagaaaaaa
     3601 aaaagagaaa aaaaaaaaaa gaaaaaaaga aagaaaaaaa aagaaaaaaa agaaaaaaaa
     3661 aaaaaaaaag aaagcatagg tggcctgaat cgctggtctt gtcttcctta taaactgtta
     3721 ggcctctcct cctggggacg aatgcagcct tacacctacc caggatcttc tggtttgcta
     3781 gaatgttcat gtctctctca gaccctaata aagcctcatt tcagtacca
//
