LOCUS       XM_039091462            1918 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus catsper channel auxiliary subunit
            epsilon (Catspere), transcript variant X23, mRNA.
ACCESSION   XM_039091462
VERSION     XM_039091462.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051348.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039091462.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1918
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="13"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..1918
                     /gene="Catspere"
                     /note="catsper channel auxiliary subunit epsilon; Derived
                     by automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 3 Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 3 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:689786"
                     /db_xref="RGD:1565309"
     CDS             133..1638
                     /gene="Catspere"
                     /codon_start=1
                     /product="cation channel sperm-associated auxiliary
                     subunit epsilon isoform X17"
                     /protein_id="XP_038947390.1"
                     /db_xref="GeneID:689786"
                     /db_xref="RGD:1565309"
                     /translation="MPDMILWDGHSTYYSHNNFTEVGIIETDSGNTNLSLIAEGSKVH
                     NVVADTTGNILVKMENNDLFYIKDGIAEIVPLSRWVNTTAETALVLDKSFQVNILHYN
                     QNLDEKYQLHLQSYPLVLELQSKNKGLEDMCPYLTFQHDVHSQFYHLDKGDSLTVWTQ
                     IVYPENRGLDILVDYYGSNILTWTQNTEYEIASGFCTKSMITRFFQTTNYESVKNYYD
                     LEKKNTGLTLIKIRPSEYTRTCPTVIPVFEISVGCDPTKYIQVQGFNNTRCHRRDFSY
                     VIDKELLRDSPHENLKVRYEVAKYGCPRTVDMEEMFHPVVELYDENGFIKIVDANFIL
                     WEVHGRNDYMYNSTMQQNGCINEAQTWDIMIEENPGVPMEDIWGPQNYRPCFSYAIGT
                     PGDLSQPYEIINYSNKNALKWSSSYAAMYVYRLKVLDPNYSFCNLTTYFAIESLGQIP
                     RSSIYLVAALVFVLMLTFISVLVLSYFWYSKIYRRFIIEPLHKPPGKQKKN"
ORIGIN      
        1 cgtagaaggt accatttacc taaaaacaaa ggattcattt aaaataatag atgaaaacaa
       61 tggtattgct ggaactggaa tccttggctt ttcaaaaaga agatggtgtc agattaggta
      121 tttatacaag ccatgccgga tatgatcctg tgggatggac acagcactta ctatagccac
      181 aataatttca ccgaagttgg aattattgag acagactcag gaaacaccaa tttgtcatta
      241 atagcagagg gcagcaaagt ccacaacgtc gttgcagata ctactggaaa tattttggta
      301 aaaatggaaa ataatgattt gttctacatc aaggatggca ttgcagaaat agttccgcta
      361 tcgaggtggg taaacacgac agcagagaca gcacttgtgc ttgacaaatc ttttcaagta
      421 aatatattac actataatca aaatctcgac gagaagtacc agttacatct acagtcatat
      481 ccgttggttc tggagctaca aagtaaaaat aaaggtttag aagacatgtg cccatatctg
      541 acatttcaac acgatgttca cagtcagttt taccatttag acaaaggaga tagcctgaca
      601 gtttggactc aaatagtcta cccagaaaat cggggtctcg atattctcgt ggattactat
      661 ggatcaaata tattaacttg gactcaaaac actgagtacg agattgcatc aggattctgt
      721 actaaaagta tgataacaag gttttttcag acaaccaatt acgaatcagt aaagaattac
      781 tatgatttag aaaaaaagaa cacaggtctc acacttataa agatacgacc tagtgaatat
      841 acaagaacat gtccaacagt cataccggtg ttcgaaatta gtgttggctg cgaccccact
      901 aaatacattc aagtacaagg atttaataat accagatgtc atcgtcgtga cttttcttat
      961 gtgattgaca aggaacttct gagagatagc ccacatgaaa atttgaaagt aaggtatgaa
     1021 gtagcaaaat atggctgccc gcgaacagtt gatatggaag aaatgtttca ccctgtagta
     1081 gaattgtatg atgaaaatgg atttattaaa atagtggatg caaattttat cctgtgggaa
     1141 gtgcacggca ggaatgacta catgtataat tctactatgc agcagaatgg ttgtataaat
     1201 gaagcacaga cgtgggacat tatgatagag gagaacccag gcgtcccaat ggaagacatc
     1261 tgggggcctc agaactatag gccttgtttt tcttatgcta ttgggacgcc aggagaccta
     1321 agtcaaccat acgagattat aaactattct aataaaaacg ccttaaaatg gtcctcatca
     1381 tatgccgcaa tgtatgtgta tcgcttgaag gtcttggatc caaactatag cttctgtaac
     1441 ctaacaacgt attttgcgat tgagagctta ggacagattc ccagatcaag tatctacctg
     1501 gtagctgcct tggtatttgt cctcatgctc acattcatca gtgttctagt tctgagctat
     1561 ttctggtact cgaagattta taggcggttt attattgaac cacttcacaa gcctcctgga
     1621 aaacagaaga agaattagga aacctgagag tcgactccgg atacatatat gtagatagat
     1681 agtagtatgc atatatgtaa atatattaag aatttacatt tgcctaataa gctcatgcta
     1741 ttattttatt caatatctga aaaaatatag ttaaattact tctactaata gcatacatca
     1801 cattactgtg ttatttcatt ttaatgatac catatatact gttacattgc atttaaaaaa
     1861 taaacacctt tggctattat gctgactcct aacaatgaaa gtttctgaca gtgaataa
//
