LOCUS       XM_039091441            3356 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus catsper channel auxiliary subunit
            epsilon (Catspere), transcript variant X3, mRNA.
ACCESSION   XM_039091441
VERSION     XM_039091441.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051348.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039091441.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3356
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="13"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..3356
                     /gene="Catspere"
                     /note="catsper channel auxiliary subunit epsilon; Derived
                     by automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 5 Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 3 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:689786"
                     /db_xref="RGD:1565309"
     CDS             283..3081
                     /gene="Catspere"
                     /codon_start=1
                     /product="cation channel sperm-associated auxiliary
                     subunit epsilon isoform X3"
                     /protein_id="XP_038947369.1"
                     /db_xref="GeneID:689786"
                     /db_xref="RGD:1565309"
                     /translation="MKSTIYSIFSTRSSIILEYEGDTFKSWDIPEGCKVQNKSSPKTL
                     LYCKTPGNHKISPININDMQEDERLLTVDSSNICFLWYYTVVDVFFNLSQIITIWVYD
                     PENASPEELQWTAKEPSVNSMVLTKQMNTLGQYPVIYTLEKGLKYDPGPLTPDGTWII
                     HLPMTSDDIIKQIRGNKVSFQDCFIASLQFLLTFPMNVISDPPEYEPLSLPAGSPLLA
                     SWHTCIPTFVLLATEHETFQTNNSFQTWTKVRAPPGVLTEAQRHSLRDVILLDQRILF
                     LVEGTIYLKTKDSFKIIDENNGIAGTGILGFSKRRWCQIRYLYKLASKKSLLFAWSKD
                     VVYAGYTNLRFLVFTTISKLKDVLKLSPGDTLEIMTVEYLWHPQEVAFMLSHCTDCST
                     IKDVRIVLFNSMHSKYVLQDFDIQVAKETQLDCRFLLSAMPDMILWDGHSTYYSHNNF
                     TEVGIIETDSGNTNLSLIAEGSKVHNVVADTTGNILVKMENNDLFYIKDGIAEIVPLS
                     RWVNTTAETALVLDKSFQVNILHYNQNLDEKYQLHLQSYPLVLELQSKNKGLEDMCPY
                     LTFQHDVHSQFYHLDKGDSLTVWTQIVYPENRGLDILVDYYGSNILTWTQNTEYEIAS
                     GFCTKSMITRFFQTTNYESVKNYYDLEKKNTGLTLIKIRPSEYTRTCPTVIPVFEISV
                     GCDPTKYIQVQGFNNTRCHRRDFSYVIDKELLRDSPHENLKVRYEVAKYGCPRTVDME
                     EMFHPVVELYDENGFIKIVDANFILWEVHGRNDYMYNSTMQQNGCINEAQTWDIMIEE
                     NPGVPMEDIWGPQNYRPCFSYAIGTPGDLSQPYEIINYSNKNALKWSSSYAAMYVYRL
                     KVLDPNYSFCNLTTYFAIESLGQIPRSSIYLVAALVFVLMLTFISVLVLSYFWYSKIY
                     RRFIIEPLHKPPGKQKKN"
ORIGIN      
        1 tcctgtgagc cctaaggctt caactgccgc caccccagga ccgaggccac accccctcct
       61 ggcctggcgc ctgctaccgg gagaaacgcg cgagagccga ggccaggggg cggggctaac
      121 ggagagttcc ccccgctccg tgccccgccc gtcagcctct ttgggctttc aaattccggc
      181 ggggaagggc ttgaggcccc taaggtgtgt ggaactacaa ttcccagcat gcaatgctct
      241 gcgaggcggc caaggcacag cgccaaggtg tcctgatact ccatgaaaag cacaatatat
      301 tcgatcttta gtaccaggag ttctatcatc ctagagtatg aaggagacac atttaaatcg
      361 tgggatatac cggaaggttg taaagttcaa aacaaatcat cacccaagac attgctatac
      421 tgtaaaacgc ctggtaatca caagataagc ccaatcaaca tcaacgacat gcaggaagat
      481 gaacggctcc tgactgtgga tagttctaac atttgcttct tgtggtatta cacagttgta
      541 gacgtttttt tcaacttaag ccagattatt accatatggg tatatgatcc agaaaatgcc
      601 agccctgaag agctgcagtg gactgcaaag gaaccatcag tgaattccat ggtactaacc
      661 aagcagatga acaccctggg acagtatcct gtcatataca cacttgagaa ggggctgaag
      721 tacgacccag gtcccttaac tccagacgga acctggatca ttcatctacc aatgacctca
      781 gatgatataa tcaaacagat aagaggtaac aaagtgtctt tccaggactg cttcattgca
      841 tccctccagt tcctgctgac atttcccatg aacgtcattt ctgatcctcc tgaatatgag
      901 ccactcagcc tgccagctgg aagtccgttg ctggccagct ggcacacctg catccccaca
      961 tttgtcctct tggccactga acatgagacc ttccaaacga acaattcctt tcaaacctgg
     1021 acgaaagtaa gagcccctcc aggtgtcctg actgaagctc aaaggcacag tctgagggat
     1081 gtgatcctat tggaccaaag aattctgttt ctcgtagaag gtaccattta cctaaaaaca
     1141 aaggattcat ttaaaataat agatgaaaac aatggtattg ctggaactgg aatccttggc
     1201 ttttcaaaaa gaagatggtg tcagattagg tatttataca agcttgcatc aaaaaaaagc
     1261 ttattgtttg cttggtcaaa agatgtagtt tacgctggat atactaatct tagatttctg
     1321 gtattcacga ctatttcaaa gctaaaagat gttctaaagc tttcccccgg tgacaccctg
     1381 gaaataatga ctgttgagta cttgtggcac ccgcaggagg ttgcttttat gctgtcccac
     1441 tgcacagact gctcgactat caaggacgtt cgcatagtgc tgtttaattc aatgcattct
     1501 aaatacgtgc tccaggactt tgacatacaa gtggccaagg agacccagtt agactgtcgc
     1561 tttcttttat cagccatgcc ggatatgatc ctgtgggatg gacacagcac ttactatagc
     1621 cacaataatt tcaccgaagt tggaattatt gagacagact caggaaacac caatttgtca
     1681 ttaatagcag agggcagcaa agtccacaac gtcgttgcag atactactgg aaatattttg
     1741 gtaaaaatgg aaaataatga tttgttctac atcaaggatg gcattgcaga aatagttccg
     1801 ctatcgaggt gggtaaacac gacagcagag acagcacttg tgcttgacaa atcttttcaa
     1861 gtaaatatat tacactataa tcaaaatctc gacgagaagt accagttaca tctacagtca
     1921 tatccgttgg ttctggagct acaaagtaaa aataaaggtt tagaagacat gtgcccatat
     1981 ctgacatttc aacacgatgt tcacagtcag ttttaccatt tagacaaagg agatagcctg
     2041 acagtttgga ctcaaatagt ctacccagaa aatcggggtc tcgatattct cgtggattac
     2101 tatggatcaa atatattaac ttggactcaa aacactgagt acgagattgc atcaggattc
     2161 tgtactaaaa gtatgataac aaggtttttt cagacaacca attacgaatc agtaaagaat
     2221 tactatgatt tagaaaaaaa gaacacaggt ctcacactta taaagatacg acctagtgaa
     2281 tatacaagaa catgtccaac agtcataccg gtgttcgaaa ttagtgttgg ctgcgacccc
     2341 actaaataca ttcaagtaca aggatttaat aataccagat gtcatcgtcg tgacttttct
     2401 tatgtgattg acaaggaact tctgagagat agcccacatg aaaatttgaa agtaaggtat
     2461 gaagtagcaa aatatggctg cccgcgaaca gttgatatgg aagaaatgtt tcaccctgta
     2521 gtagaattgt atgatgaaaa tggatttatt aaaatagtgg atgcaaattt tatcctgtgg
     2581 gaagtgcacg gcaggaatga ctacatgtat aattctacta tgcagcagaa tggttgtata
     2641 aatgaagcac agacgtggga cattatgata gaggagaacc caggcgtccc aatggaagac
     2701 atctgggggc ctcagaacta taggccttgt ttttcttatg ctattgggac gccaggagac
     2761 ctaagtcaac catacgagat tataaactat tctaataaaa acgccttaaa atggtcctca
     2821 tcatatgccg caatgtatgt gtatcgcttg aaggtcttgg atccaaacta tagcttctgt
     2881 aacctaacaa cgtattttgc gattgagagc ttaggacaga ttcccagatc aagtatctac
     2941 ctggtagctg ccttggtatt tgtcctcatg ctcacattca tcagtgttct agttctgagc
     3001 tatttctggt actcgaagat ttataggcgg tttattattg aaccacttca caagcctcct
     3061 ggaaaacaga agaagaatta ggaaacctga gagtcgactc cggatacata tatgtagata
     3121 gatagtagta tgcatatatg taaatatatt aagaatttac atttgcctaa taagctcatg
     3181 ctattatttt attcaatatc tgaaaaaata tagttaaatt acttctacta atagcataca
     3241 tcacattact gtgttatttc attttaatga taccatatat actgttacat tgcatttaaa
     3301 aaataaacac ctttggctat tatgctgact cctaacaatg aaagtttctg acagtg
//
