LOCUS       XM_039091439            3242 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus catsper channel auxiliary subunit
            epsilon (Catspere), transcript variant X1, mRNA.
ACCESSION   XM_039091439
VERSION     XM_039091439.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051348.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039091439.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3242
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="13"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..3242
                     /gene="Catspere"
                     /note="catsper channel auxiliary subunit epsilon; Derived
                     by automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 1 EST, 5 Proteins, and 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 3 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:689786"
                     /db_xref="RGD:1565309"
     CDS             94..2967
                     /gene="Catspere"
                     /codon_start=1
                     /product="cation channel sperm-associated auxiliary
                     subunit epsilon isoform X1"
                     /protein_id="XP_038947367.1"
                     /db_xref="GeneID:689786"
                     /db_xref="RGD:1565309"
                     /translation="MLGRQVEAVLLLWLSCCVLAVWRYSMKSTIYSIFSTRSSIILEY
                     EGDTFKSWDIPEGCKVQNKSSPKTLLYCKTPGNHKISPININDMQEDERLLTVDSSNI
                     CFLWYYTVVDVFFNLSQIITIWVYDPENASPEELQWTAKEPSVNSMVLTKQMNTLGQY
                     PVIYTLEKGLKYDPGPLTPDGTWIIHLPMTSDDIIKQIRGNKVSFQDCFIASLQFLLT
                     FPMNVISDPPEYEPLSLPAGSPLLASWHTCIPTFVLLATEHETFQTNNSFQTWTKVRA
                     PPGVLTEAQRHSLRDVILLDQRILFLVEGTIYLKTKDSFKIIDENNGIAGTGILGFSK
                     RRWCQIRYLYKLASKKSLLFAWSKDVVYAGYTNLRFLVFTTISKLKDVLKLSPGDTLE
                     IMTVEYLWHPQEVAFMLSHCTDCSTIKDVRIVLFNSMHSKYVLQDFDIQVAKETQLDC
                     RFLLSAMPDMILWDGHSTYYSHNNFTEVGIIETDSGNTNLSLIAEGSKVHNVVADTTG
                     NILVKMENNDLFYIKDGIAEIVPLSRWVNTTAETALVLDKSFQVNILHYNQNLDEKYQ
                     LHLQSYPLVLELQSKNKGLEDMCPYLTFQHDVHSQFYHLDKGDSLTVWTQIVYPENRG
                     LDILVDYYGSNILTWTQNTEYEIASGFCTKSMITRFFQTTNYESVKNYYDLEKKNTGL
                     TLIKIRPSEYTRTCPTVIPVFEISVGCDPTKYIQVQGFNNTRCHRRDFSYVIDKELLR
                     DSPHENLKVRYEVAKYGCPRTVDMEEMFHPVVELYDENGFIKIVDANFILWEVHGRND
                     YMYNSTMQQNGCINEAQTWDIMIEENPGVPMEDIWGPQNYRPCFSYAIGTPGDLSQPY
                     EIINYSNKNALKWSSSYAAMYVYRLKVLDPNYSFCNLTTYFAIESLGQIPRSSIYLVA
                     ALVFVLMLTFISVLVLSYFWYSKIYRRFIIEPLHKPPGKQKKN"
ORIGIN      
        1 gcgaccacgc gacggccaac caactgaagc cttgggggag tgctagtcct gcaggcgcag
       61 cagaagcggt tgcttagagg aggagttggc gccatgttag gccggcaggt ggaggcggtg
      121 ctgctgctct ggctgagctg ctgtgtcttg gctgtgtgga gatactccat gaaaagcaca
      181 atatattcga tctttagtac caggagttct atcatcctag agtatgaagg agacacattt
      241 aaatcgtggg atataccgga aggttgtaaa gttcaaaaca aatcatcacc caagacattg
      301 ctatactgta aaacgcctgg taatcacaag ataagcccaa tcaacatcaa cgacatgcag
      361 gaagatgaac ggctcctgac tgtggatagt tctaacattt gcttcttgtg gtattacaca
      421 gttgtagacg tttttttcaa cttaagccag attattacca tatgggtata tgatccagaa
      481 aatgccagcc ctgaagagct gcagtggact gcaaaggaac catcagtgaa ttccatggta
      541 ctaaccaagc agatgaacac cctgggacag tatcctgtca tatacacact tgagaagggg
      601 ctgaagtacg acccaggtcc cttaactcca gacggaacct ggatcattca tctaccaatg
      661 acctcagatg atataatcaa acagataaga ggtaacaaag tgtctttcca ggactgcttc
      721 attgcatccc tccagttcct gctgacattt cccatgaacg tcatttctga tcctcctgaa
      781 tatgagccac tcagcctgcc agctggaagt ccgttgctgg ccagctggca cacctgcatc
      841 cccacatttg tcctcttggc cactgaacat gagaccttcc aaacgaacaa ttcctttcaa
      901 acctggacga aagtaagagc ccctccaggt gtcctgactg aagctcaaag gcacagtctg
      961 agggatgtga tcctattgga ccaaagaatt ctgtttctcg tagaaggtac catttaccta
     1021 aaaacaaagg attcatttaa aataatagat gaaaacaatg gtattgctgg aactggaatc
     1081 cttggctttt caaaaagaag atggtgtcag attaggtatt tatacaagct tgcatcaaaa
     1141 aaaagcttat tgtttgcttg gtcaaaagat gtagtttacg ctggatatac taatcttaga
     1201 tttctggtat tcacgactat ttcaaagcta aaagatgttc taaagctttc ccccggtgac
     1261 accctggaaa taatgactgt tgagtacttg tggcacccgc aggaggttgc ttttatgctg
     1321 tcccactgca cagactgctc gactatcaag gacgttcgca tagtgctgtt taattcaatg
     1381 cattctaaat acgtgctcca ggactttgac atacaagtgg ccaaggagac ccagttagac
     1441 tgtcgctttc ttttatcagc catgccggat atgatcctgt gggatggaca cagcacttac
     1501 tatagccaca ataatttcac cgaagttgga attattgaga cagactcagg aaacaccaat
     1561 ttgtcattaa tagcagaggg cagcaaagtc cacaacgtcg ttgcagatac tactggaaat
     1621 attttggtaa aaatggaaaa taatgatttg ttctacatca aggatggcat tgcagaaata
     1681 gttccgctat cgaggtgggt aaacacgaca gcagagacag cacttgtgct tgacaaatct
     1741 tttcaagtaa atatattaca ctataatcaa aatctcgacg agaagtacca gttacatcta
     1801 cagtcatatc cgttggttct ggagctacaa agtaaaaata aaggtttaga agacatgtgc
     1861 ccatatctga catttcaaca cgatgttcac agtcagtttt accatttaga caaaggagat
     1921 agcctgacag tttggactca aatagtctac ccagaaaatc ggggtctcga tattctcgtg
     1981 gattactatg gatcaaatat attaacttgg actcaaaaca ctgagtacga gattgcatca
     2041 ggattctgta ctaaaagtat gataacaagg ttttttcaga caaccaatta cgaatcagta
     2101 aagaattact atgatttaga aaaaaagaac acaggtctca cacttataaa gatacgacct
     2161 agtgaatata caagaacatg tccaacagtc ataccggtgt tcgaaattag tgttggctgc
     2221 gaccccacta aatacattca agtacaagga tttaataata ccagatgtca tcgtcgtgac
     2281 ttttcttatg tgattgacaa ggaacttctg agagatagcc cacatgaaaa tttgaaagta
     2341 aggtatgaag tagcaaaata tggctgcccg cgaacagttg atatggaaga aatgtttcac
     2401 cctgtagtag aattgtatga tgaaaatgga tttattaaaa tagtggatgc aaattttatc
     2461 ctgtgggaag tgcacggcag gaatgactac atgtataatt ctactatgca gcagaatggt
     2521 tgtataaatg aagcacagac gtgggacatt atgatagagg agaacccagg cgtcccaatg
     2581 gaagacatct gggggcctca gaactatagg ccttgttttt cttatgctat tgggacgcca
     2641 ggagacctaa gtcaaccata cgagattata aactattcta ataaaaacgc cttaaaatgg
     2701 tcctcatcat atgccgcaat gtatgtgtat cgcttgaagg tcttggatcc aaactatagc
     2761 ttctgtaacc taacaacgta ttttgcgatt gagagcttag gacagattcc cagatcaagt
     2821 atctacctgg tagctgcctt ggtatttgtc ctcatgctca cattcatcag tgttctagtt
     2881 ctgagctatt tctggtactc gaagatttat aggcggttta ttattgaacc acttcacaag
     2941 cctcctggaa aacagaagaa gaattaggaa acctgagagt cgactccgga tacatatatg
     3001 tagatagata gtagtatgca tatatgtaaa tatattaaga atttacattt gcctaataag
     3061 ctcatgctat tattttattc aatatctgaa aaaatatagt taaattactt ctactaatag
     3121 catacatcac attactgtgt tatttcattt taatgatacc atatatactg ttacattgca
     3181 tttaaaaaat aaacaccttt ggctattatg ctgactccta acaatgaaag tttctgacag
     3241 tg
//
