LOCUS       NM_001134984            2434 bp    mRNA    linear   ROD 24-JUN-2024
DEFINITION  Rattus norvegicus cation channel sperm associated auxiliary subunit
            delta (Catsperd), mRNA.
ACCESSION   NM_001134984 XM_001056381 XM_001060630
VERSION     NM_001134984.1
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2434)
  AUTHORS   Chung,J.J., Navarro,B., Krapivinsky,G., Krapivinsky,L. and
            Clapham,D.E.
  TITLE     A novel gene required for male fertility and functional CATSPER
            channel formation in spermatozoa
  JOURNAL   Nat Commun 2, 153 (2011)
   PUBMED   21224844
REFERENCE   2  (bases 1 to 2434)
  AUTHORS   Florea,L., Di Francesco,V., Miller,J., Turner,R., Yao,A.,
            Harris,M., Walenz,B., Mobarry,C., Merkulov,G.V., Charlab,R.,
            Dew,I., Deng,Z., Istrail,S., Li,P. and Sutton,G.
  TITLE     Gene and alternative splicing annotation with AIR
  JOURNAL   Genome Res 15 (1), 54-66 (2005)
   PUBMED   15632090
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from BC169121.1.
            
            [WARNING] On Aug 6, 2024 this sequence was replaced by
            NM_001134984.2.
            
            On or before Sep 16, 2008 this sequence version replaced
            XM_001060630.1, XM_001056381.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC169121.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760389
                                           [ECO:0000348]
            ##Evidence-Data-END##
FEATURES             Location/Qualifiers
     source          1..2434
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="9"
                     /map="9q11"
     gene            1..2434
                     /gene="Catsperd"
                     /gene_synonym="Tmem146"
                     /note="cation channel sperm associated auxiliary subunit
                     delta"
                     /db_xref="GeneID:680264"
                     /db_xref="RGD:1594167"
     exon            1..97
                     /gene="Catsperd"
                     /gene_synonym="Tmem146"
                     /inference="alignment:Splign:2.1.0"
     CDS             39..2180
                     /gene="Catsperd"
                     /gene_synonym="Tmem146"
                     /note="catSperdelta; catSper-delta; cation channel
                     sperm-associated protein subunit delta; transmembrane
                     protein 146; catsper channel auxiliary subunit delta"
                     /codon_start=1
                     /product="cation channel sperm-associated auxiliary
                     subunit delta precursor"
                     /protein_id="NP_001128456.1"
                     /db_xref="GeneID:680264"
                     /db_xref="RGD:1594167"
                     /translation="MLMLMLAAVATVVRAQTVCRFRTVRTGKVFANPVTLEGDLLFYA
                     FSNTVVVKNVCKTDIAVYLGQRVFITKNRFEASILPLTIPKSMEVKMPSITSAHFVSD
                     AMILFVIDGKVYSYNFIEDIWRTVNGITEPVSHISGDPCCFEGYFCLELSNNLFAYFR
                     GGQMPGTNIYFSNNGGFSFELLNSDRMSHLKGLLGGIFHFHSLSQVGILLVENNLGTF
                     HYLEYPLNHSTGVPFLYESPLEVIIKPQQRGFLILWNQKTLLVSSNSGQIVEAMQLME
                     EGNINDLNVEHAKLTIHSIASNTYELAFLVEQDQLYYGSQSYMGNYIIKLSNQQFWSE
                     EASVHFWDVGMLEVLTPVSDPYFPAFDFKKCLVNVQLALMDQSLQLEPCNVEFLESTM
                     EDRMFIIDMNSKLKLSALMVPRKGMNPTPLVMVSNPHALGFKANLTQFGNMYDGNSKF
                     KLDIELQQQQHWGNSELNFTASIKHEAISSITVDIADKTLSCVDLKPLSTLISVGCDL
                     TKKVIVQNKISACAMGILDPVLLQKNYSYTIEKEAYNPTSYSGEAQDDLIVFYQYKEL
                     GCPRLVYYDKPWKPVVELWKDGTLEEIMNAEYVILELNGIVTYSYSLTAATAHCRSQP
                     QNWSIFKEDAEKPSLWNRETYVSCHEDNQDNPLLWPNVEYQILGGRTDNKIIFGQRNG
                     IYTFYLTVVDPYYRYSSTAQGSAPVLGFGAK"
     exon            98..152
                     /gene="Catsperd"
                     /gene_synonym="Tmem146"
                     /inference="alignment:Splign:2.1.0"
     exon            153..229
                     /gene="Catsperd"
                     /gene_synonym="Tmem146"
                     /inference="alignment:Splign:2.1.0"
     exon            230..302
                     /gene="Catsperd"
                     /gene_synonym="Tmem146"
                     /inference="alignment:Splign:2.1.0"
     exon            303..420
                     /gene="Catsperd"
                     /gene_synonym="Tmem146"
                     /inference="alignment:Splign:2.1.0"
     exon            421..485
                     /gene="Catsperd"
                     /gene_synonym="Tmem146"
                     /inference="alignment:Splign:2.1.0"
     exon            486..599
                     /gene="Catsperd"
                     /gene_synonym="Tmem146"
                     /inference="alignment:Splign:2.1.0"
     exon            600..683
                     /gene="Catsperd"
                     /gene_synonym="Tmem146"
                     /inference="alignment:Splign:2.1.0"
     exon            684..834
                     /gene="Catsperd"
                     /gene_synonym="Tmem146"
                     /inference="alignment:Splign:2.1.0"
     exon            835..930
                     /gene="Catsperd"
                     /gene_synonym="Tmem146"
                     /inference="alignment:Splign:2.1.0"
     exon            931..1013
                     /gene="Catsperd"
                     /gene_synonym="Tmem146"
                     /inference="alignment:Splign:2.1.0"
     exon            1014..1190
                     /gene="Catsperd"
                     /gene_synonym="Tmem146"
                     /inference="alignment:Splign:2.1.0"
     exon            1191..1304
                     /gene="Catsperd"
                     /gene_synonym="Tmem146"
                     /inference="alignment:Splign:2.1.0"
     exon            1305..1394
                     /gene="Catsperd"
                     /gene_synonym="Tmem146"
                     /inference="alignment:Splign:2.1.0"
     exon            1395..1453
                     /gene="Catsperd"
                     /gene_synonym="Tmem146"
                     /inference="alignment:Splign:2.1.0"
     exon            1454..1532
                     /gene="Catsperd"
                     /gene_synonym="Tmem146"
                     /inference="alignment:Splign:2.1.0"
     exon            1533..1585
                     /gene="Catsperd"
                     /gene_synonym="Tmem146"
                     /inference="alignment:Splign:2.1.0"
     exon            1586..1660
                     /gene="Catsperd"
                     /gene_synonym="Tmem146"
                     /inference="alignment:Splign:2.1.0"
     exon            1661..1789
                     /gene="Catsperd"
                     /gene_synonym="Tmem146"
                     /inference="alignment:Splign:2.1.0"
     exon            1790..1967
                     /gene="Catsperd"
                     /gene_synonym="Tmem146"
                     /inference="alignment:Splign:2.1.0"
     exon            1968..2125
                     /gene="Catsperd"
                     /gene_synonym="Tmem146"
                     /inference="alignment:Splign:2.1.0"
     exon            2126..2371
                     /gene="Catsperd"
                     /gene_synonym="Tmem146"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 agttgaagag cggtgttagc tgtggagaac caggcaggat gctgatgttg atgctagcag
       61 cagtggccac ggtggtcagg gctcaaacag tgtgccggtt tcggacagtg aggactggga
      121 aagtgtttgc gaaccctgta acacttgaag gggatctgct gttctacgcc ttctccaaca
      181 cagttgtggt caagaacgta tgcaagactg acattgccgt gtatctaggg cagagggttt
      241 tcataacgaa aaaccgcttt gaggctagca tcttaccgct caccattccg aagtcaatgg
      301 aggtgaaaat gccatcaatc acgagtgccc actttgtttc cgatgcaatg attctgtttg
      361 tgatcgatgg aaaagtctac agttacaact ttattgagga catctggaga acagtgaacg
      421 gtataacaga acctgtctct cacattagtg gtgacccttg ttgttttgaa ggctactttt
      481 gcctggagtt atcaaataac ctgtttgcat atttccgtgg tggccaaatg cctgggacca
      541 acatatattt ctccaacaat ggaggattct cattcgagct cctgaacagt gacagaatga
      601 gtcaccttaa agggttacta ggaggcatct tccatttcca ttctttgtct caggtgggga
      661 tactcttggt tgaaaacaac ttgggcacat ttcactacct ggagtacccc ctgaaccata
      721 gtaccggggt acccttttta tatgagagtc cccttgaagt catcatcaaa ccacagcaga
      781 gagggtttct gatcctctgg aatcagaaaa ctttattggt gtcctccaat tcaggccaga
      841 tcgtagaagc catgcagttg atggaagaag ggaacatcaa cgacttaaat gttgagcatg
      901 ccaaactcac cattcacagc attgcctcga atacttacga gctggctttt ttggtagaac
      961 aagatcaact gtactatgga agtcagagtt acatgggaaa ctacataatc aaactgtcca
     1021 atcaacaatt ctggtctgaa gaggcaagtg tgcatttctg ggacgtcggc atgctggagg
     1081 tcctcacccc cgtttctgac ccatatttcc cagcgtttga cttcaagaag tgcctggtga
     1141 acgtgcagct cgctctcatg gaccagagcc tgcaactcga gccatgtaat gtggaatttc
     1201 tggagagcac catggaagat agaatgttca taatagacat gaacagcaag ctaaagctgt
     1261 ctgccctcat ggtaccccgg aagggcatga accccacccc actggtcatg gtcagcaatc
     1321 cccatgccct ggggtttaag gcaaacctca ctcagtttgg caacatgtat gatggcaact
     1381 ctaagttcaa actggatatt gaactccaac agcagcagca ctggggcaac tcagagttga
     1441 acttcactgc cagcatcaag cacgaagcca tctcctccat aaccgtggac atagctgaca
     1501 agacactttc gtgtgtggac ctaaagcctc tgtccacgct catctcagtt ggctgtgact
     1561 tgacaaagaa agttattgtg caaaacaaaa tctctgcctg tgccatgggg atcctcgacc
     1621 cggtgctgct gcagaagaac tatagttaca ccattgagaa ggaagcgtac aacccaacca
     1681 gctacagtgg tgaagcccag gatgacctga tagtatttta ccagtacaag gaactgggct
     1741 gtccccgctt agtctactac gacaagccgt ggaaacctgt ggtggaactg tggaaggatg
     1801 ggactctaga agaaatcatg aacgcagaat atgtcatctt ggagttgaat ggaatagtca
     1861 cctattcata ctccttgacg gctgccactg cccactgccg atcacagcct cagaactgga
     1921 gcatctttaa agaagacgca gagaagccgt ccctctggaa cagagagacc tatgtcagct
     1981 gccatgagga caaccaggac aaccccctgc tatggccaaa tgtcgagtat cagatcttag
     2041 gtggcaggac agacaacaag attatttttg gccaaagaaa tggaatctat accttctatc
     2101 tgactgtggt ggatccatac tacagatatt caagtactgc ccagggatct gcacctgtgc
     2161 ttggcttcgg ggcaaaatga gaagggggct gcgctccaga agggtgaagg accagccaga
     2221 gaaaatccca cagataggca agaagccaga catcaagaaa tagccaaaga cacaggggcg
     2281 gccctagact caaagtgagc cccagtgagg ggcctttctc ttccatgtgt gtccttgttg
     2341 gcgcttgttc caataaattg ttaacaacaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa
     2401 aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaa
//
