LOCUS       XM_039113034            3734 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus cation channel sperm associated
            auxiliary subunit beta (Catsperb), mRNA.
ACCESSION   XM_039113034
VERSION     XM_039113034.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051341.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 1% of CDS bases
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..3734
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="6"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..3734
                     /gene="Catsperb"
                     /note="cation channel sperm associated auxiliary subunit
                     beta; Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 EST, 2 Proteins, and 98%
                     coverage of the annotated genomic feature by RNAseq
                     alignments"
                     /db_xref="GeneID:100910102"
                     /db_xref="RGD:6500065"
     CDS             156..3467
                     /gene="Catsperb"
                     /codon_start=1
                     /product="cation channel sperm-associated auxiliary
                     subunit beta"
                     /protein_id="XP_038968962.1"
                     /db_xref="GeneID:100910102"
                     /db_xref="RGD:6500065"
                     /translation="MEPPLIYVMLLLLGAFEFSSGVVHNKGKERTFFSCSGDGIYTGL
                     HAIKLFLTTDNLKVYCFFKNENQSPSQKILGLFTSGGLAPNMIIMNSTYYGTYHFKLS
                     PFHQHEKLIYLLFLDIAAVEQWIIKFTMHEGLNIYDTEGTLLDLVREPILQWNLGTEF
                     IQNSITHLYAFVDGIKVTRSPCANDVALIGLIMKPLLNGVFIGRTASGFWTYEECKWY
                     DMTKLIYEGLKYEHQILTVIDLVLTNHFLVILTSLGLYVSGDLRYPTTSQIKLSRIEF
                     CGFERVDYIKGNLWYNEKCFANREHFEVDYVTITFKRNRTLSESSSCFFSKEPFLHWL
                     PCLYENYQNERDVPHVITFLIDQETESGVYLMHIQSSRETYVTVSMLKDGSPSAHPKF
                     PSFKFPSTFTHPVGMVFHPRSHFLYVYGDKVWISMDGGNTFEILCNLVLNYVQETAHS
                     FYTSDIAFILNDGKILMTKAGLNRYNELGMLNDTIFTLYYDHLGYIHKLTPRSFDYGT
                     NLLGHGNSVSIFGKAPDMGFETAIVPQYISAKEMVFFAYVPLKTSKDLAQTMNFKNIH
                     TGKTIEYSKSGIAYIRNVFSHDDPKGFYTSVHTELIEPFGMEDSKESPCLHHPLEIKY
                     SGNIFFTLTLTSQNIQEGFLSTDVEKTVLIPGHSSFMITEVENMQTAKALATMPQTVK
                     STLNFPLGSWFLYNFGSIRGRNWTIGTKPCNYWIQQDSLDFMSLNLVKYIDVGNTLNF
                     QFKIIPTAKGMSTYPIPPVSVMIGNPSLLDVKAQGFFDLFFNYYLNIHVSGKFFLKGS
                     TTLALIFWEGSVSCLVISLLPTIKSSCSYLRTMQHRPGRNIPPEDWISGVHKDSHGFN
                     MIKTLPINYRPPSKMGISIPLTDNFYHADPSKPIPRNRFHKSKETGKYKQCANVTSRE
                     MCNCSQHQKTSHAVAFSDCKEKVHRFKFPVTQYPVALEIFNERDKISAEPPYLVTMTE
                     VNMRENWQLKHNVPENVKKMKNYLEPLLKTPVYNPLGLNLSIKGSELFHFRVSVVPGV
                     SFCDLHEEFQIYVDEVPLPFPGHALIAVSTSVVLGGLIFMAFVFQLRNIHPLRALKRS
                     IMGNPVQTSTTTVNS"
ORIGIN      
        1 ctgattggct cttaccaaag ttaggtggac cactaaggca gttaactgaa aattcagctc
       61 ttgatactta ggtcttcaat ctgtagagaa gaaacaaggc taagatataa acaatcaaca
      121 atacaaaacc aaaagcagga gacataaaat taaagatgga accaccactt atatatgtta
      181 tgcttttgct tttgggtgca tttgaatttt catcaggagt agtacataat aagggtaagg
      241 agcgaacttt cttttcttgt tctggtgatg ggatctacac aggcctgcat gcaatcaagt
      301 tgttccttac cactgacaat ttgaaagtct actgtttctt caaaaatgaa aaccaaagtc
      361 cttcacagaa aattttgggt ctttttacat caggaggcct tgctcccaac atgataatta
      421 tgaacagtac atactatgga acctaccatt ttaaattatc tccgtttcat caacatgaaa
      481 aacttattta tcttttattt ttagatatcg cagctgtaga acaatggatt ataaagttca
      541 caatgcatga aggattaaac atttatgata cagaagggac cttattggac cttgtccgag
      601 agcctattct tcagtggaat cttgggactg aatttataca gaatagtatc acacacttat
      661 atgcctttgt ggacggtatc aaagtgacaa ggagcccctg tgccaatgat gtggctttaa
      721 taggccttat tatgaaacca ttgttgaatg gtgttttcat aggcagaacc gcttctggat
      781 tttggactta tgaggaatgc aaatggtatg acatgacaaa gctcatctat gaaggactta
      841 agtatgaaca ccaaatactt acagtgatag atttggtttt aacaaatcat tttttggtca
      901 tcctcacctc tttgggtctt tatgtaagtg gtgatcttcg ttatccaacc acttcacaga
      961 taaagctttc aagaatagag ttctgtggct ttgaaagggt tgattatatc aaaggaaacc
     1021 tgtggtataa tgaaaaatgt tttgcaaaca gagaacattt tgaagtggat tatgttacta
     1081 tcactttcaa gaggaacaga actctcagtg agtccagttc ttgttttttt agtaaagagc
     1141 catttcttca ttggttacct tgcttatatg aaaattatca aaatgaaaga gatgttccac
     1201 atgtgataac atttcttatt gaccaagaaa ctgaaagtgg agtttacctc atgcatattc
     1261 aaagttccag agagacctat gtcactgtat ctatgctcaa ggatgggagt ccaagtgctc
     1321 atccaaaatt tcctagtttc aaatttcctt ccacattcac acatccagtt ggaatggtgt
     1381 tccatccccg aagccacttt ctgtatgttt atggtgataa ggtatggatt tcaatggatg
     1441 gtggcaatac ttttgaaatt ctgtgtaact tagtcctaaa ctatgtccag gagactgctc
     1501 atagctttta tacctcagac atagctttta ttctaaatga tggaaagatt ttaatgacaa
     1561 aagcaggatt aaacagatac aatgaattgg gaatgcttaa tgatacaatt ttcacattgt
     1621 actatgacca tttgggatac atacacaaac tgactccacg ttcctttgat tatggtacaa
     1681 accttttagg gcatggaaat tctgtcagta tttttggaaa ggcgcctgat atgggatttg
     1741 aaacggcaat agttccacaa tatatctctg ccaaagaaat ggtttttttt gcatatgtac
     1801 ctctgaaaac gtctaaagac cttgcacaga caatgaattt taaaaatatt cacacgggaa
     1861 aaacgataga gtatagtaaa tctggaattg cttatatcag aaatgtattt tcacatgacg
     1921 atccgaaggg attttacaca tctgttcaca cagaattaat agaacctttt gggatggagg
     1981 actcaaagga gagcccttgc ttacatcatc ctcttgaaat taaatattcc ggaaacatat
     2041 tcttcacact gactcttacg tcacaaaata tccaggaggg ctttctttct acagatgtag
     2101 agaagactgt gttgatacct ggccatagca gcttcatgat cacagaagtt gagaatatgc
     2161 agactgctaa agccttggca actatgcctc aaacagtaaa atcaacactg aactttccat
     2221 taggttcttg gttcttgtac aactttggct caattagagg acggaattgg accataggta
     2281 caaagccatg taattattgg attcaacaag atagtcttga ttttatgtcc cttaatcttg
     2341 tgaagtatat tgatgtggga aacacactaa attttcaatt taagattatt ccaactgcaa
     2401 aaggtatgtc aacatatcct atccctccag tctctgtgat gattggaaac ccatcgttgt
     2461 tggatgttaa ggcacaaggt ttctttgacc tcttttttaa ttattatcta aacattcacg
     2521 tatctggcaa attttttcta aaaggttcca ctacactagc actgattttt tgggagggat
     2581 cagtttcatg cttggttata tcactgctcc caaccataaa gagcagctgc agttacctca
     2641 ggactatgca gcaccgtcct ggcaggaaca taccacctga agactggatt agtggagttc
     2701 acaaggacag ccatggtttc aatatgatca aaactctgcc gataaactac agacctccat
     2761 ctaagatggg aatttctatt ccactcacag ataattttta ccatgcagac cctagcaagc
     2821 ccataccgag aaaccgattt cacaagtcaa aggaaactgg caaatacaaa cagtgtgcta
     2881 atgttaccag tcgggaaatg tgcaactgct cacaacatca aaagacttca catgctgttg
     2941 ctttctcaga ttgcaaagaa aaggttcatc gtttcaagtt tccagtcaca caatacccag
     3001 ttgctttgga aattttcaat gaaagagata aaatctccgc agaacctcca tatttggtta
     3061 ccatgactga agtgaatatg agggaaaact ggcaactaaa acacaatgtg ccagaaaatg
     3121 ttaagaaaat gaagaattac ttagaaccac tacttaagac cccagtgtat aatcctttgg
     3181 gtctcaacct aagcataaag ggctctgagc tgtttcactt cagagtgtct gtggttcctg
     3241 gagtcagctt ttgtgactta catgaagaat ttcagattta tgtcgatgaa gtaccactgc
     3301 cttttccagg acatgcacta atagctgttt caacatctgt agtgctaggg ggactaattt
     3361 ttatggcatt tgtattccaa ctgcgtaaca tccacccatt gagagcattg aagagatcta
     3421 ttatgggaaa tcctgtacaa acctcaacta caactgtcaa ctcataattg aaagtctgta
     3481 taattaacaa atgataatca attatctttg aatcctagtt ccattaaaca tgttcatata
     3541 atatatattt ataaaatgtg catttgggac aatgttatag aattattata ctattataat
     3601 tctagttcct gatggtcagc agttccatat tgcattttct gctttttaaa atacataaaa
     3661 gattatttga gcacttacat ggaatgggtt ttcttttttt tagattgttt tccaaaataa
     3721 atagtgataa ccaa
//
