LOCUS       XM_342941               1864 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus cation channel, sperm associated 4
            (Catsper4), transcript variant X1, mRNA.
ACCESSION   XM_342941
VERSION     XM_342941.9
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051340.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_342941.10.
            
            On Jan 21, 2021 this sequence version replaced XM_342941.8.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1864
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="5"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..1864
                     /gene="Catsper4"
                     /note="cation channel, sperm associated 4; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 2 ESTs, 1 Protein, and 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 4 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:362623"
                     /db_xref="RGD:1565213"
     CDS             167..1513
                     /gene="Catsper4"
                     /codon_start=1
                     /product="cation channel sperm-associated protein 4
                     isoform X1"
                     /protein_id="XP_342942.5"
                     /db_xref="GeneID:362623"
                     /db_xref="RGD:1565213"
                     /translation="MSEKHKWWHQVDAIDVQHGGFKKKTYELMGRHEEQVLINRRDVM
                     EKKDAWDVQEFITQMYIKQLLRHPAFQLLLAFLLVTNAITIALRTNSYLGQKHYELFS
                     TIDDIVLTILICEVLLGWLNGFWIFWKDGWNILNFAIVFILFMGFFIKQLNETFITYP
                     LRALRLVHVCMAVEPLARIIRVILQSMPDLANVMALILFFMLVFSVFGVTLFGAFVPK
                     HFQNMGVALYTLFICITQDGWLDIYMDFQVEEREYAMEVGGAIYFAIFITLGAFIGLN
                     LFVVVVTTNLEQMMKTGEEEGHLQPITFNEKDAEEEDWTDELPLVHCTEARKETSAVP
                     QEPLVGGPLRNLSEKTCDNFCLVLEAIQENLLEYKEIRDELNTIMEEVRSIRYNQEQE
                     NVIMHKRTSKSMTFPSESSADIREMANKQDLITALVDREKVYDSTTNIGIKHKSSH"
ORIGIN      
        1 tacctcgtgg taggagcttt tttttttttt ttttgatctg cttggaatgt ctggatggaa
       61 cacagaaggt tgtaggtaac agctgcctct gtgatctcac cacaaggggg agaaagattg
      121 cttgcagcaa agaggcagac tctgaggaga aggggacaga gcaaagatgt ctgaaaaaca
      181 caagtggtgg caccaggtgg atgccatcga tgtccaacat ggaggcttta agaaaaaaac
      241 ctatgagctc atgggtcggc atgaggagca agtgcttatc aaccgcaggg acgtcatgga
      301 gaagaaggat gcctgggacg tgcaggagtt catcactcaa atgtacatca agcagttgct
      361 tcgccatccg gccttccagc tgttgctggc ctttctgctg gtgactaacg ccattaccat
      421 tgctctccgc accaactctt atctcggtca gaaacactat gagttattct cgactataga
      481 tgacattgtg ttgacaatcc ttatctgtga ggttctcctt ggctggctga acggattctg
      541 gattttctgg aaggatggct ggaatatcct caacttcgcc attgtcttta tcttgtttat
      601 ggggttcttc ataaaacaac tgaacgaaac cttcatcacc taccctctca gggctcttcg
      661 gctggttcat gtgtgtatgg cagtggaacc cctggccaga atcatcaggg tcatcctgca
      721 gtcgatgccg gacctggcca atgtcatggc cctcatcctc ttctttatgc tggtattttc
      781 tgtgtttggg gtcacgctct ttggtgcgtt cgtgcccaag cacttccaga acatgggggt
      841 ggctctgtat acactcttca tctgcatcac ccaggacgga tggctggaca tctacatgga
      901 cttccaggtg gaggaaagag agtacgcaat ggaggtcggg ggcgccatct actttgctat
      961 ctttatcacc ctcggtgcct tcattggcct caacttgttt gtcgtcgtcg tgaccacaaa
     1021 tctggaacaa atgatgaaga cgggcgagga ggaagggcat ctgcagccca taactttcaa
     1081 tgagaaagat gcagaggaag aggactggac cgatgagcta ccactggtcc attgtacaga
     1141 ggcccgcaag gagacttccg cagtccctca ggaaccactg gttgggggcc ccctgcgtaa
     1201 cctctcggaa aagacctgtg ataacttctg cttggttctt gaagcaatac aggagaactt
     1261 gctggaatac aaagagatcc gagacgagct caacacgatc atggaggagg tgcgctccat
     1321 ccgttacaac caagagcagg aaaacgtgat catgcacaag cgtacctcca aaagcatgac
     1381 attcccaagc gagtcctctg cagacattcg ggagatggct aacaagcaag acttgatcac
     1441 tgcactagtc gacagggaaa aggtgtatga ttctaccaca aacataggta tcaaacacaa
     1501 gtccagccac tgagacggca gtatgggaac tgaaggcctg cacacacagg gccagctgct
     1561 gcatcccaaa ctggagccca tccctctccc ttccacccgg gcagcagagg ccatggggct
     1621 ggaaaggtgg cagcatctgc agggcttatg cctgggagcc tcaagtccag aggagtcagg
     1681 attctggacg agagcggaag tacagaaagg cgtagccaga ctttggccta aagatgagta
     1741 tccctgacct ctgcttcagc cagagctgga tgaggcctgt gtgggcccaa gcaccataaa
     1801 gagaagagcc agccaggcca gtgagaccgt gtgcaccgaa aataaacttt tgtgttataa
     1861 ccaa
//
