LOCUS       XM_039111286            2885 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus cation channel, sperm associated 4
            (Catsper4), transcript variant X4, mRNA.
ACCESSION   XM_039111286
VERSION     XM_039111286.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051340.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039111286.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2885
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="5"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..2885
                     /gene="Catsper4"
                     /note="cation channel, sperm associated 4; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 1 Protein, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 4 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:362623"
                     /db_xref="RGD:1565213"
     CDS             523..1281
                     /gene="Catsper4"
                     /codon_start=1
                     /product="cation channel sperm-associated protein 4
                     isoform X4"
                     /protein_id="XP_038967214.1"
                     /db_xref="GeneID:362623"
                     /db_xref="RGD:1565213"
                     /translation="MSEKHKWWHQVDAIDVQHGGFKKKTYELMGRHEEQVLINRRDVM
                     EKKDAWDVQEFITQMYIKQLLRHPAFQLLLAFLLVTNAITIALRTNSYLGQKHYELFS
                     TIDDIVLTILICEVLLGWLNGFWIFWKDGWNILNFAIVFILFMGFFIKQLNETFITYP
                     LRALRLVHVCMAVEPLARIIRVILQSMPDLANVMALILFFMLVFSVFGVTLFGAFVPK
                     HFQNMGVALYTLFICITQDGWLDIYMDFQSLTRS"
ORIGIN      
        1 gttaccctga gttatacacc cagggcccct gtgccagggt accgagctct gttgtcatga
       61 atctggcctg tctatctctc cctagacttt agaggtcaga cctgctcccc tgtcctagcc
      121 ctagggaaca acgtccactt agtaaagaga tttatctttc tgaaaggcca gtgggacatg
      181 ggcatgtctc ttgtcttccc cttctctcag ccccacctct agtacctgga tctagaaagg
      241 ggacctctgt ttgctgtatt tagacggtag gagaggctag acctattccc accagtctct
      301 aacctctgac cccaatcctg aagtccttgg ctgaatactt ggctctctct gtgaggtacc
      361 tcgtggtagg agcttttttt tttttttttt gatctgcttg gaatgtctgg atggaacaca
      421 gaaggttgta ggtaacagct gcctctgtga tctcaccaca agggggagaa agattgcttg
      481 cagcaaagag gcagactctg aggagaaggg gacagagcaa agatgtctga aaaacacaag
      541 tggtggcacc aggtggatgc catcgatgtc caacatggag gctttaagaa aaaaacctat
      601 gagctcatgg gtcggcatga ggagcaagtg cttatcaacc gcagggacgt catggagaag
      661 aaggatgcct gggacgtgca ggagttcatc actcaaatgt acatcaagca gttgcttcgc
      721 catccggcct tccagctgtt gctggccttt ctgctggtga ctaacgccat taccattgct
      781 ctccgcacca actcttatct cggtcagaaa cactatgagt tattctcgac tatagatgac
      841 attgtgttga caatccttat ctgtgaggtt ctccttggct ggctgaacgg attctggatt
      901 ttctggaagg atggctggaa tatcctcaac ttcgccattg tctttatctt gtttatgggg
      961 ttcttcataa aacaactgaa cgaaaccttc atcacctacc ctctcagggc tcttcggctg
     1021 gttcatgtgt gtatggcagt ggaacccctg gccagaatca tcagggtcat cctgcagtcg
     1081 atgccggacc tggccaatgt catggccctc atcctcttct ttatgctggt attttctgtg
     1141 tttggggtca cgctctttgg tgcgttcgtg cccaagcact tccagaacat gggggtggct
     1201 ctgtatacac tcttcatctg catcacccag gacggatggc tggacatcta catggacttc
     1261 caaagcctca cacgttcgta ggaccacctg accctgttca cggagatctc agctactgtg
     1321 gtacagttgt atgactcaac ttctggccag gaagcaagcc tgtgcttgtg tctgaggtta
     1381 ctaggtggct tccagattgc accagagcgc aacgagccac ctagattcct gggaagtttg
     1441 ggtttaacca ttcctgctca aacctgctcc ccaaggtcat ttttgtgttc tattctttgc
     1501 ttcttctctg tcaagtccaa gtccagtttc actctgtccc actcttcact gtaaagtaga
     1561 agccagttgg atttctgcag tcaggattca tctagacaca gggaacagag ttcccagcat
     1621 tcaggaagca gagagaggcg aatcaggagt tcaagttaat tgttggctat aattaacaag
     1681 acttgcttca aaaaggaaca agaggggagg ggtaggatga gagacatgct ggggtagagt
     1741 gtttgcctag cttgggttca atccccagaa ctgagcaaag caagattggt ggcctctacc
     1801 tatattgcac tgtgagaggc cagtctaaga acataaatag agagaaaagg ctggcacagc
     1861 ggcacacgac tttagtccta gcacttggga gtcagaggca ggaggagctt tgaaagaact
     1921 gggccagcct ggtctacaga ccccatttca ggctaaccag agttacatgg taagaccttg
     1981 tttcaaaaca aacaaacaag caagcaagca aacaaacaca aacaatatca ccaaaccacc
     2041 accaacaaca acaaaaggtg gggcactgag gcccagagca tgattgctgg gtggcacagg
     2101 gaaggcagag gcagtgcaac ctctgttcga ggccagccag gtccacgtgg actgcacagt
     2161 ggggtggcac tgggcttttg agtctctccc cttgcaatgg ccctgtgacg ttagacaaat
     2221 gattctactg ttggcctcaa actggcagcc atcttcctgc ttctgtctct taaatgctga
     2281 ggttacagat gtgggtcacc aagaccagtt tttttatgtg tgtatttatt tatgttgtgg
     2341 gtctgggccc gtaagcatgc tccggaagcc ttctactaca gagctgctgc tccgacttct
     2401 agcttttaaa agttggaggg attcatttta tctgttttgt ctttaaatgc agtctagcat
     2461 agtccaggat agtccatcac tctagctctt cctccgctca cttcccaagt gctaagctta
     2521 tggtcatgtg accccactag cttaggccgt gtagaggctt catgcttact aggcaaacac
     2581 tccaccaacc atgtttcatt tttctagttt ttttttgttt tgttttggag acagaaactc
     2641 aggtgtccag actagctttg aacttctgct ctcctatctc tatttcctga gagctgggct
     2701 ttattacttc tctgatcctc tatttaatca ctcataatta gagactgcaa tgcagtattg
     2761 acgggctgga gagatgactc agcggttaag agcaccaacg gcggggttgg ggatttagct
     2821 cagtggtaga gtgcttgcct aggaagcgca aggccctggg ttctgtcccc agctccgggg
     2881 gaaaa
//
