LOCUS       XM_039101328            2531 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus cation channel, sperm associated 1
            (Catsper1), transcript variant X1, mRNA.
ACCESSION   XM_039101328
VERSION     XM_039101328.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051336.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039101328.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2531
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..2531
                     /gene="Catsper1"
                     /note="cation channel, sperm associated 1; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 3 Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 3 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:689349"
                     /db_xref="RGD:1593515"
     CDS             135..2171
                     /gene="Catsper1"
                     /codon_start=1
                     /product="cation channel sperm-associated protein 1
                     isoform X1"
                     /protein_id="XP_038957256.1"
                     /db_xref="GeneID:689349"
                     /db_xref="RGD:1593515"
                     /translation="MDQPSRTDESYYETHSGSLDPSHHFHPPSSYPYPHPTLYRPSLG
                     GVLHHESPQHGVSPQPSQQHAGFYQQNESQHLRGSDFHDSAFPHHSYHQDRAHFSTSP
                     TNVPHTYGGPHPLAESQHSGGPQDGSHIESYHSHQGNPRKPSVALSHPSSIGSHQGKT
                     HHHYERPQYLDPRQSRRQSDLSDNLSHRSGEEYQNQERSGLQVGQQQEGQRASSKRGE
                     HRRRRGDYLKYKDRIRHRRPSASQLSHKSHSTEGTSPSHMRSKSLASMPQSHLGVQSY
                     VSSQVHSGDSLKESVSWSDEDHVQKRKKAQRTHKKAHSGNVFHLIWEKISQLLLGLRQ
                     MLLTLTQSLCFETFIFLVVCLNTIVLVAQTFTELEIRGEWYFMVLDSIFLSIYVIEAF
                     LKLIALGMEYFYDPWNNLDFFIMVMAALDFVLLQINSLSYSFYNHSMFRILKVFKSMR
                     ALRAIRVLRRLSILTSLHEVTGTLSGSLPSITAILSLMFTCLFLFSVVLRALFQESDP
                     KRFNNIFTTLFTLFTMLTLDDWSLIYIDNRAQGAWYIIPILVIYIIIQYFIFLNLVIA
                     VLVDNFQMALLKGLEKVKQEQAARVHEKLLDDSLTDLNKADPDAQMTEETLKTQLIER
                     MFGNMTEKQRKLHFQFLQLVAAVELHQQKFRSQAFVIDELVDTAFEAGDDDFGK"
ORIGIN      
        1 aattctaaga gaatactcag accttcctag aaactgtagc tgtagttggg ctgagcttag
       61 cttttggaga tccagaaaag ggacttaagg ttctacactt gagctgtctt tgttccaggg
      121 tctccaagac agtcatggat caaccttcaa ggacagacga gtcttactat gagacacact
      181 ctggtagctt ggatccaagc catcacttcc acccaccatc ctcctacccc tatccccacc
      241 ccacactgta taggccaagc ctcggtggag tccttcatca tgagtctcct caacatgggg
      301 tgtccccaca accatcccaa cagcatgctg gattctatca acaaaatgaa tcccagcatt
      361 tgcgtggatc agacttccat gatagtgctt tcccccatca ttcctatcat caggacaggg
      421 cccacttctc cacatcacct actaatgtcc ctcacactta tggcggacct catccccttg
      481 ctgagtctca gcactctggt ggaccccaag atggatctca tattgaatcc tatcattccc
      541 accaaggtaa cccccgtaaa cccagtgtag ctttgtccca tccctcctct attggcagcc
      601 accaagggaa aacccatcac cactatgaga ggcctcaata tcttgaccct cgccagagca
      661 gaaggcagtc tgacctttca gacaaccttt cccatcgctc tggtgaggag taccaaaacc
      721 aggaaagatc tggtctccaa gtcggtcagc aacaggaggg ccagcgagcc agctctaaac
      781 gtggtgagca tcgacgccgg cgtggagatt atttgaagta caaagaccgt attcgccatc
      841 gccgcccaag tgcttcccag ctctcacaca agtcccacag cacagaaggc acctctcctt
      901 ctcatatgag atccaagagc ttagccagta tgcctcagtc tcacttggga gttcaatctt
      961 atgtttccag ccaagttcat tccggggata gcttgaaaga atcagtctct tggagcgatg
     1021 aggaccatgt tcagaaacgc aaaaaggccc agaggaccca caagaaggca cactctggga
     1081 atgtcttcca tttgatatgg gaaaaaataa gccaactcct tttgggtctc cggcaaatgt
     1141 tattgacact aacccagtcc ctgtgctttg agacctttat cttcctcgtg gtctgcctga
     1201 acacaatcgt ccttgtggcc cagactttca ctgagctaga gatccgaggt gaatggtact
     1261 tcatggtttt ggactctatt ttcctgtcca tctatgtgat agaagccttc ctcaagctaa
     1321 tcgctctggg catggagtat ttttacgacc catggaataa tctggacttc ttcatcatgg
     1381 tcatggcagc gttggacttt gtgctcctcc agataaactc gctctcctat tcattctaca
     1441 accacagcat gttccggatc ctcaaagtct tcaagagcat gcgggccctg cgggccattc
     1501 gggtccttcg gaggctcagc atcctgacca gcctccacga agtgaccggg actctgagtg
     1561 gatctctgcc gtccatcaca gctatcctct ccctcatgtt tacctgtctc ttcctcttct
     1621 ctgtggtgct ccgggcactg tttcaggagt cagaccccaa gcgcttcaat aacatcttta
     1681 ccactctctt caccctattc accatgctca ccttggatga ctggtccctc atctacatag
     1741 acaacagggc ccaaggtgcc tggtacatca tccccatcct cgtgatttac atcattatcc
     1801 agtacttcat cttcctcaac ctggtgattg ctgtcctggt agacaacttc cagatggcat
     1861 tgctcaaagg cctagagaaa gtgaagcagg agcaagctgc ccgggtccat gagaagttgc
     1921 tggacgactc tttgacagat ctcaacaaag cagacccgga tgcccaaatg actgaggaga
     1981 ccttgaagac gcagcttatt gagagaatgt ttggcaacat gacagagaag caacggaagc
     2041 tccacttcca gttcctgcag ttggtggcag ctgtggagct gcatcagcag aagtttcgct
     2101 cccaagcctt tgtcatcgat gagcttgtgg acactgcatt tgaggctgga gacgacgatt
     2161 ttgggaagtg accctgaaga atattgactt gagtctctgg caagctacct acctgggtgg
     2221 gttgggacaa ggccctaaca ctgctggtac tatccagacc catgttggac taaggtccca
     2281 atagagtttt ctaaaacccc agggggctct gtgtcctcac tggctagcgt gaagcaaagg
     2341 tcaaggggag ttgaacagtg tgccactgac atgtgctgac agttgcaagt gtaagggttc
     2401 ttcttggatc tcctccggct tcaccagatc ccagcctctc agttcagtcg aacagtgcat
     2461 tagcagagat cagaagagca gtacagagag aggagtgtgg gaggggatgg aaggccaaat
     2521 gtggagtcct t
//
