LOCUS       NM_001419706            1821 bp    mRNA    linear   ROD 31-MAR-2024
DEFINITION  Rattus norvegicus ciliogenesis associated TTC17 interacting protein
            (Catip), transcript variant 1, mRNA.
ACCESSION   NM_001419706 XM_001074457
VERSION     NM_001419706.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1821)
  AUTHORS   Bontems,F., Fish,R.J., Borlat,I., Lembo,F., Chocu,S., Chalmel,F.,
            Borg,J.P., Pineau,C., Neerman-Arbez,M., Bairoch,A. and Lane,L.
  TITLE     C2orf62 and TTC17 are involved in actin organization and
            ciliogenesis in zebrafish and human
  JOURNAL   PLoS One 9 (1), e86476 (2014)
   PUBMED   24475127
  REMARK    Publication Status: Online-Only
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000009.1.
            
            On Apr 14, 2023 this sequence version replaced XM_001074457.6.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26360181.122962.1,
                                           SRR26643293.51043.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760389
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on manual assertion, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-52                JAXUCZ010000009.1  83395105-83395156
            53-178              JAXUCZ010000009.1  83395295-83395420
            179-376             JAXUCZ010000009.1  83395854-83396051
            377-432             JAXUCZ010000009.1  83396422-83396477
            433-519             JAXUCZ010000009.1  83397436-83397522
            520-687             JAXUCZ010000009.1  83397680-83397847
            688-812             JAXUCZ010000009.1  83400067-83400191
            813-889             JAXUCZ010000009.1  83401283-83401359
            890-978             JAXUCZ010000009.1  83401616-83401704
            979-1821            JAXUCZ010000009.1  83401895-83402737
FEATURES             Location/Qualifiers
     source          1..1821
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="9"
                     /map="9q33"
     gene            1..1821
                     /gene="Catip"
                     /note="ciliogenesis associated TTC17 interacting protein"
                     /db_xref="GeneID:690437"
                     /db_xref="RGD:1596071"
     exon            1..52
                     /gene="Catip"
                     /inference="alignment:Splign:2.1.0"
     CDS             28..1596
                     /gene="Catip"
                     /note="isoform 1 is encoded by transcript variant 1;
                     Ciliogenesis-associated TTC17-interacting protein"
                     /codon_start=1
                     /product="ciliogenesis-associated TTC17-interacting
                     protein isoform 1"
                     /protein_id="NP_001406635.1"
                     /db_xref="GeneID:690437"
                     /db_xref="RGD:1596071"
                     /translation="MSSKVTPTGSKAKDHHHLGQQQQQQQQQQQQQEQPFPEANAEAI
                     SFLNSFRLEDMLLFFPETLAILSDTGEPQGELTIEVQKGKYKDDLGILTHCLLVHASS
                     RGFLDKSVCGSSLLGYLNEHLELMEQHSQEFIKFPIIPMERKMSVLKQDDQLVVSRSV
                     KEGEETKTGVSVFPCKSLKGFVSSAANVVLLRVMAWRQSVPSGARFLALDSEGKLCYC
                     TYKSLGFQTIQVGNQQAEMFIVEQTIHSEDGIPFSCQFYLLSDGHLAKRVQVGSPGCC
                     IITKMPLIREEDVIEPPPTFDRKPLVWEEDLELYSKFLDRKEQLRLSHTRYLRQHPEA
                     QALVSDFLLFLLLRRPEDVVTFAAEHFGPFAALRSPIPALRSSHQPSPFRSLEEEEEG
                     EEEEEEEEEEEEGEEEGEGKEEVEEVEIEGDDDYLYVDEEEEVEDDIYYDSYYYKYED
                     ENIYEDENIYYDNYDVDNDNDDIDNYDNDDDDDDDVDDDDDVKVDDDNVDVDNDNVDV
                     DNDNINQGLDLKKD"
     exon            53..178
                     /gene="Catip"
                     /inference="alignment:Splign:2.1.0"
     exon            179..376
                     /gene="Catip"
                     /inference="alignment:Splign:2.1.0"
     exon            377..432
                     /gene="Catip"
                     /inference="alignment:Splign:2.1.0"
     exon            433..519
                     /gene="Catip"
                     /inference="alignment:Splign:2.1.0"
     exon            520..687
                     /gene="Catip"
                     /inference="alignment:Splign:2.1.0"
     exon            688..812
                     /gene="Catip"
                     /inference="alignment:Splign:2.1.0"
     exon            813..889
                     /gene="Catip"
                     /inference="alignment:Splign:2.1.0"
     exon            890..978
                     /gene="Catip"
                     /inference="alignment:Splign:2.1.0"
     exon            979..1821
                     /gene="Catip"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 agccacagac tgactaggct caatagcatg tcttccaaag ttactcccac aggctccaaa
       61 gccaaggatc accaccactt aggccagcag cagcagcagc agcagcaaca gcagcaacag
      121 caagagcagc cattcccaga agccaatgct gaagccatca gcttcctcaa ctccttccgg
      181 ttggaggata tgcttctgtt cttccccgag acgctggcca tcctctcaga cacaggggaa
      241 cctcagggag agctgaccat tgaagtgcag aaggggaagt acaaagacga cctggggatc
      301 ctgacccact gcctcctggt acacgcctct agccgaggct tcctagacaa gtcagtgtgt
      361 ggaagctccc tcctaggcta cctcaacgag catctggagc taatggagca gcacagtcaa
      421 gaattcatca agtttcccat catccccatg gagaggaaga tgagcgtcct gaagcaggat
      481 gaccagttgg ttgtgtccag aagtgtcaag gagggtgagg aaacgaagac cggagtctct
      541 gttttcccct gtaaatcact caagggcttt gtctccagtg ccgccaatgt ggtgctgctg
      601 agagtgatgg cttggcggca gtcagtaccc agcggtgctc gattcctagc cttggactcg
      661 gagggcaagc tgtgctattg tacctataaa tccctgggtt tccagacaat ccaagtgggc
      721 aaccagcagg ctgaaatgtt catcgtggag caaaccatac actctgaaga cggcatacct
      781 ttctcctgcc agttctattt gctctctgat gggcacctgg ctaaaagagt ccaggtaggc
      841 tctccaggat gctgtatcat caccaagatg cccctcataa gggaggagga tgtgattgag
      901 cctccgccca cgtttgatcg gaagcccctg gtgtgggagg aagacctgga gctttactcg
      961 aaattcctgg atcggaagga gcagctgcgc ctcagccaca cgaggtatct gcgacagcac
     1021 ccggaggccc aagcgctggt ctctgatttc ctgctgttcc tgctgctccg ccggccagag
     1081 gacgtggtca ccttcgctgc tgagcacttc gggccctttg cggcgctgcg ctcacctatc
     1141 ccagccctgc gatcctcaca ccagcccagc cctttccgct ctctggagga agaggaggag
     1201 ggagaggagg aggaagagga agaggaagag gaagaggagg gagaggagga aggagagggc
     1261 aaggaagaag tggaagaggt ggagatagaa ggggatgatg actacttgta tgtcgacgag
     1321 gaagaagagg tggaggacga catctactat gacagttact attacaaata cgaagatgaa
     1381 aacatctacg aagatgaaaa catctactat gataactatg atgttgacaa tgacaatgac
     1441 gatattgaca attacgataa cgacgacgac gatgatgacg atgtcgacga cgacgatgac
     1501 gtcaaagtcg atgatgacaa cgttgatgtt gataatgaca acgttgatgt tgacaatgac
     1561 aacatcaacc agggtttgga cctcaaaaag gactaggtgg acagctggaa gcgggaaact
     1621 gagattggct gggggtgcag cttcagtggg tgataagcag ggtccttccc atgtgttact
     1681 ctgccagcag ggactgtatt tggccagttc ttcttgtcaa atatgggaag cttttgttta
     1741 cccatcaagt ttcatctttt cttcctagag tctattttca cagttctggc catttcaaag
     1801 aaaataaaat taaggcctgt g
//
