LOCUS       NM_001413236            3914 bp    mRNA    linear   ROD 31-MAR-2024
DEFINITION  Rattus norvegicus Cas scaffold protein family member 4 (Cass4),
            mRNA.
ACCESSION   NM_001413236 XM_006235679
VERSION     NM_001413236.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 3914)
  AUTHORS   Singh,M.K., Dadke,D., Nicolas,E., Serebriiskii,I.G., Apostolou,S.,
            Canutescu,A., Egleston,B.L. and Golemis,E.A.
  TITLE     A novel Cas family member, HEPL, regulates FAK and cell spreading
  JOURNAL   Mol Biol Cell 19 (4), 1627-1636 (2008)
   PUBMED   18256281
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000003.1.
            
            On Oct 27, 2022 this sequence version replaced XM_006235679.4.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26643284.5269.1,
                                           SRR26360190.1827335.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760434, SAMN06680412
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-186               JAXUCZ010000003.1  181581902-181582087
            187-609             JAXUCZ010000003.1  181602841-181603263
            610-711             JAXUCZ010000003.1  181610570-181610671
            712-792             JAXUCZ010000003.1  181611600-181611680
            793-2088            JAXUCZ010000003.1  181614342-181615637
            2089-2166           JAXUCZ010000003.1  181616940-181617017
            2167-3914           JAXUCZ010000003.1  181619198-181620945
FEATURES             Location/Qualifiers
     source          1..3914
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="3"
                     /map="3q42"
     gene            1..3914
                     /gene="Cass4"
                     /gene_synonym="RGD1310643"
                     /note="Cas scaffold protein family member 4"
                     /db_xref="GeneID:296409"
                     /db_xref="RGD:1310643"
     exon            1..186
                     /gene="Cass4"
                     /gene_synonym="RGD1310643"
                     /inference="alignment:Splign:2.1.0"
     CDS             151..2577
                     /gene="Cass4"
                     /gene_synonym="RGD1310643"
                     /codon_start=1
                     /product="cas scaffolding protein family member 4"
                     /protein_id="NP_001400165.1"
                     /db_xref="GeneID:296409"
                     /db_xref="RGD:1310643"
                     /translation="MRGTGIREGATKTLLARALYDNHPDCSDELAFSRGDILTIVEQN
                     VPESEGWWKCLLHGRQGLAPANRLQVLRETPVDRPCPLPPRGLDSDLTGSEAPCQVFN
                     SFSPPTPGPVYEPMKSWVEGPSPATAQVYELPDSPSSARIICEKTLNFPKQALFVLPR
                     PTRASLPTLPSQVYDVPVQRQVSSTLERPEKQQFYDIPTSSQKAVFHISTSQASGPGV
                     TLAPTTAFRQGGGYNPLSSPQKSDWIHDTPVSLGKADVRNASMTSFTKESCSNTIPGS
                     SVVRIGAVTLSPQLGNAVQKKSSPPEETSYAFLTPRGDSLPSDAGSSYKVPSRFLIPR
                     VERQNTKPNIYDTPKAMQGVFQNTSKATQGVSLAGKELERGREAPENSPWVSRQTNFL
                     SPDSDRLSVASSDSRASVVSSCSSLSTDSSPGSSSEDSVKELWMDLDFAKETAVALQS
                     RVASSVAGLLLFVSRTWRFKDSLETNVNRIRGAADRVEESLREFLDFAQGVGGLACNL
                     TDSYLQARVRDQLQTISSSYQTLLDAKGTLDRCNWSLEVLVVDKAQSSVDDLERFVQV
                     ARVVPEDVKRFTSIVVANGKLLFKQNCERGEVDWRCERCIQPPQREAESHPERSSPFH
                     KQPAAEHSLELAKKSRGDVCGQKSPNLQKKGKNTMEGKSNENQDFCGTSPTPLPSPSP
                     SGQNVERKIRLSEHSRLYFGALFKAIGVFASSLSNSQPPEVFITQSKLAITIGQKLVD
                     TLCSETQERDERNEILCGSSHLCGLLKDLALATKNAVIQYPSPSALGLLQSELEKLEY
                     HSRKFRGTLE"
     exon            187..609
                     /gene="Cass4"
                     /gene_synonym="RGD1310643"
                     /inference="alignment:Splign:2.1.0"
     exon            610..711
                     /gene="Cass4"
                     /gene_synonym="RGD1310643"
                     /inference="alignment:Splign:2.1.0"
     exon            712..792
                     /gene="Cass4"
                     /gene_synonym="RGD1310643"
                     /inference="alignment:Splign:2.1.0"
     exon            793..2088
                     /gene="Cass4"
                     /gene_synonym="RGD1310643"
                     /inference="alignment:Splign:2.1.0"
     exon            2089..2166
                     /gene="Cass4"
                     /gene_synonym="RGD1310643"
                     /inference="alignment:Splign:2.1.0"
     exon            2167..3914
                     /gene="Cass4"
                     /gene_synonym="RGD1310643"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 tctcaactgt ttccatgtgt tggcaaacag ttcggtagaa tccagcttct ggggaaccag
       61 cctgctggca tgcaatgaca ttgcatcatt gggccccgga accagacata tcagctgcag
      121 aacgaggagg accctgctca catcaccgac atgagaggca ccggcatcag agagggtgcg
      181 actaagaccc tgctggccag ggcgctttat gacaaccatc cggattgctc cgacgagctt
      241 gctttctcca gaggggatat cctgaccatc gtggaacaaa atgtgccaga gagcgagggc
      301 tggtggaagt gtctgctcca cgggaggcaa ggcctggctc ccgccaaccg cctccaagtc
      361 ctcagagaga cccctgtaga cagaccctgt cccctgcccc cgagaggcct ggactcagat
      421 ctcactggct ctgaggcgcc ttgccaggtg ttcaactcgt tctccccgcc aaccccgggt
      481 cccgtgtatg aaccgatgaa gagctgggtg gaggggccgt caccagctac tgcacaagtc
      541 tacgaactgc ctgactcacc ttccagtgcc aggatcatct gcgagaagac tctgaacttc
      601 cccaagcagg ccctctttgt gcttcccaga ccgacgaggg cctcactgcc gacgcttcct
      661 tctcaggtgt atgacgtacc tgtccagagg caagtctcct cgacccttga gaggccagag
      721 aagcagcagt tctatgacat acccaccagc tcccagaagg ctgtgttcca catctccacc
      781 agccaggcaa gcggtccggg tgttacattg gcacccacaa cggccttcag acaaggtggt
      841 ggctataacc cattatccag ccctcagaaa tcagattgga ttcatgacac tccagtgtcg
      901 ctgggaaagg ctgatgtcag aaatgcatct atgaccagct tcaccaaaga gtcatgctcc
      961 aacaccatcc caggctcctc tgttgtccgc attggagctg tgaccctctc cccacagctg
     1021 gggaacgccg tgcagaagaa aagcagcccc ccggaagaaa cttcgtatgc ctttctgacc
     1081 cccagggggg actcacttcc ttctgatgca ggcagcagct acaaggtccc ttccaggttt
     1141 ctcattccca gagtggagcg acagaacacc aaacctaaca tttatgacac ccctaaagcc
     1201 atgcagggtg tgtttcagaa tacttcaaaa gccacacaag gggtgtctct ggcaggaaag
     1261 gagctggaga gaggcagaga ggctccagag aattccccct gggtctccag acagacaaat
     1321 ttcctgtctc ccgactcgga tcgattatct gttgccagct cagacagcag ggctagtgtg
     1381 gtatcttcat gctcctccct atccacggac tcctcccctg gctcctcctc agaggactcc
     1441 gtgaaggagc tgtggatgga cttggacttt gcaaaagaga cagcggtggc tctgcaaagc
     1501 agagtggcca gctcagtggc gggcctgctg ctctttgtaa gcaggacctg gaggttcaaa
     1561 gactccttgg aaaccaacgt caacagaatc cgaggggccg ctgaccgcgt agaggaatcc
     1621 ttgagagaat ttctggattt tgcccaaggt gttggtgggt tggcctgcaa tctcacagac
     1681 agctaccttc aggctagagt tagagatcag ctccagacga tctctagctc ctaccagacg
     1741 ctgctggatg ctaaggggac cctggaccgc tgcaattggt cgctggaagt tctcgtggtg
     1801 gacaaagccc aaagcagtgt ggatgacctg gagaggtttg tgcaggttgc gcgggtagtt
     1861 ccggaggacg tgaagaggtt cacctccatc gtcgttgcca acgggaagct cctttttaaa
     1921 cagaactgtg agagaggaga ggtggactgg aggtgtgaaa gatgcatcca gcctccccaa
     1981 agagaagctg agtcccaccc agagcgcagc agccccttcc acaaacagcc agcagctgag
     2041 cactcccttg agctggcgaa gaaaagcaga ggggatgtct gtgggcagaa gtcacctaac
     2101 ctacaaaaga aaggaaagaa caccatggaa ggaaagtcaa atgaaaacca agacttctgt
     2161 ggcacgagtc ctacccctct tccttctcct tctcccagtg ggcagaacgt ggagaggaag
     2221 atccgcctgt ctgagcacag caggctctat ttcggagcac tcttcaaagc catcggtgtc
     2281 tttgccagta gcctcagcaa cagccagccc cctgaggtct tcatcactca gagcaagctg
     2341 gccatcacga tcgggcagaa gctggtggac acgctgtgca gcgagaccca ggagagagat
     2401 gaacgcaatg agatcctgtg tggaagcagt cacctgtgcg gactgctcaa ggacctggcg
     2461 ctggccacca agaatgctgt gatccagtac cctagcccga gtgccctggg cctcctccag
     2521 tcagagctgg agaaactaga gtaccactcc cggaaattca gaggcacact ggaatgaggc
     2581 ctacggaggt caactcctgg cctgttttat actcaccact cttgttctgt ggtaaagcca
     2641 atcggaatgg ctgaagcagc cttgggtctc ggagctggtg ttagtaagtg gctaaggccc
     2701 tgtaggacac tggctgacca caaggaggtc aagaaagaga ggcaggtgac aagtcaggac
     2761 cttgggatgg acctgacttc actgaccttc actgtgtgaa ggtgtacaga atggacaggg
     2821 gaagtggcat tgtagaagcc atgtttcatg tcggtcgaat gtgtatgtgg tttacagtca
     2881 ttctgcgcat atcaggcagc acctgaggtc aaggtcaagg ggctggagag acagcagtgt
     2941 gtcaaaggct ctgagtgcag agagtcccag tctgattggg aaaacggaca aagagacgaa
     3001 gtactatcgg cagtctgtcg gctgctagtg agaaaagaaa ctggggaaga gcgagaatgg
     3061 agaaggagaa aagaactttt ccccaaagga ttgacttctg tcatattcat tgggaaagtg
     3121 caagtgttgg tgtcacacac ctttaagttt agcacacagg aggcagaggt ggacagacag
     3181 gccttaagga gaccagacca gtccacagtg agctccaagc caaaggctgc atactgagaa
     3241 ccgatttttt tttttttggt tctttttttt tcggagctgg ggaccgaacc cagggccttg
     3301 cgcttcctag gtaagcgctc taccactgag ctaaatcccc agccccgaga accgattttt
     3361 taaagcctcc ctaaaagtaa tgagtttgcc ttttttaatc tgttgtttta gattaatact
     3421 gtgagacgta tacaagttgt atatgtgcga acgtgggtgt gtgtgcatgt gttgctagaa
     3481 actgaatcta gggtttcacg aatgccaagc atgtactctg ccatgaagat tgactccctg
     3541 gccccccaaa atgtattttt gctgttactt catcctgaag gtgatgtaac acctgttgga
     3601 ggtggttatg tgctctgtcc ggtcccctgc taacttattt catatgttaa aatcctgtgt
     3661 ccatcggttc ccctgctcaa attaggtttg tacttcacta gtctcaaatc tgttgcatta
     3721 tttatctata atcatgggtt taaacacatt tgcaaagtcc tgagagatgg ttcaggaggt
     3781 agaggtatca atcttgactt cccgagttct attcctggga cccatgtggt ggaagaagag
     3841 aactgactcc tgataactgt cttcagacca tgcacaaaat aagacgaaac tgtaattaaa
     3901 aacttatcaa caga
//
