LOCUS       XM_017597580            2594 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus caspase 16 (Casp16), transcript
            variant X1, mRNA.
ACCESSION   XM_017597580
VERSION     XM_017597580.2
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051345.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Jan 21, 2021 this sequence version replaced XM_017597580.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2594
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="10"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..2594
                     /gene="Casp16"
                     /note="caspase 16; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 2 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 4 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:680728"
                     /db_xref="RGD:1588238"
     CDS             656..1768
                     /gene="Casp16"
                     /codon_start=1
                     /product="caspase-14 isoform X1"
                     /protein_id="XP_017453069.1"
                     /db_xref="GeneID:680728"
                     /db_xref="RGD:1588238"
                     /translation="MAFLVSGTLQAAAQLVDAWDSLGRKGKYSVQGSRAALILCSPGV
                     SARAVAAMDGVLQALGFENYKKRQVLVQLFCRIAEESAENTYCPIFRTSFRGTLCLGD
                     GPWRPESDPGPSTQYDLSGTRAALLLAVFQDRLGARHDVTALRDLCQALGFKVTLRTN
                     PSAQAFREELAEFRKKLDTHKGPVSCALVALMAHGGPQGQLLGADGEEVQPEVLVQEL
                     SCCQALHGHPKIFLFQACRGGYRDPGVGPRALPWYRHWLRAPPAIPTQADVLQIHADA
                     PGSLLSTPGGSGQADILTVYAAAEGCVAYRDEKGSDFVQTLVEVIRANPGRDLLELMT
                     EVNRRVCELDVLGPDSDELRKACLEIRSSLRRRLCL"
ORIGIN      
        1 attctcagcc agccctcaac atgtctctta gttttagtac aagctgggag ctacactgag
       61 ctggcggtac ctggtcagaa ctagtctttg actcttgcta atccttttgg tccttttggg
      121 cagccctagg gggcctcatc tggggatgga cagagacaag atgttcctga cccttacaaa
      181 ttgatccatt tgtgccagcc tttgtcccca ggtttagaac atctatcctg tggtctcaac
      241 catccctgtt ttccgtggga aggaactgtt gtatgtgtgg gctttgtgca cagctgcatg
      301 aaggagaata gggtgaaatg gtgctgggga aagtgtgagg ccctttctgg tgctagcagc
      361 tccctcctga gggagacatt caggtgtaac aagatcagat aggagcatga gccaagggct
      421 aagaatagaa tttgggctca ggtggggaca tacgaatgcc agccgtgaag ttgtcagcca
      481 gagccagaaa aaggagcaga gccagggttc taaggaaggg cagagtccgt ttgggattac
      541 aagcaattga taggcagcag cgaacgtaga agagggcaag gatcaggccc caaagtactg
      601 ggaagcagag ccaggaagta agctctgggc ctggaggaag cccctcctgg ttctcatggc
      661 cttcttggtg tctgggaccc tacaagccgc tgcacagctg gtggatgctt gggacagcct
      721 ggggagaaag ggaaaataca gtgtgcaggg ttcaagagca gccttgatac tctgcagccc
      781 tggggtgtct gccagagcag ttgctgccat ggatggtgtg ctccaggctc tgggctttga
      841 aaactataag aagaggcagg tcctagtcca gctcttttgc agaatagctg aagagtctgc
      901 tgagaacacc tactgcccca tctttaggac ttcctttcgg gggactctgt gtttgggaga
      961 tgggccctgg aggccagagt cagaccctgg acccagcaca caatatgacc tgtctgggac
     1021 cagggctgcc ctcctactgg ctgtgtttca agatcggcta ggagcacggc acgatgtgac
     1081 agcactgagg gatctttgcc aggctttggg cttcaaggtc accctgagga caaacccttc
     1141 agctcaggcc ttcagggagg aactggcaga gtttcggaaa aagctggata ctcataaggg
     1201 ccctgtgagc tgtgccctgg tggccctgat ggcccatggg gggccacagg ggcagctgct
     1261 gggggccgat ggtgaagaag tacagccaga agtgttggtg caggaactga gctgctgcca
     1321 ggcactgcat ggccacccca agatcttcct gttccaggcc tgccgtggtg ggtacaggga
     1381 ccctggtgtg gggccaagag ctctcccatg gtaccggcat tggttgagag cacccccagc
     1441 catccccacc caggcagacg ttcttcagat ccatgctgat gccccaggca gccttctctc
     1501 cactccaggg ggctcaggcc aagcagacat ccttaccgtg tatgccgctg ctgagggctg
     1561 tgtggcctat cgggacgaaa agggctcgga ctttgtccag acactggtgg aggtcatcag
     1621 agccaaccct ggaagagatc tccttgagct gatgactgag gtcaacagac gggtgtgtga
     1681 gctggacgtc ctagggccag acagtgatga actgcgcaaa gcctgcctgg agatccgcag
     1741 ctcgctcagg cgccggctct gtttatagga ctaacaacct cgccacttcc cctgcatccc
     1801 ctcttcacat cctgtcatcg atgcagcaat gggcgtggga gctcagatag cgccaataaa
     1861 tatgtattca cgatcggcct gctccgggaa atgcatgctt tttctgaaat acgggagata
     1921 acgggaaagt acgtggcaga taggggaacg actgtgctcc cgggaaccag aggttggatc
     1981 ggggtctgtg cctcctgtct gggactacgg aacctaacaa ggctgatttg gatatgcccg
     2041 gggaggccta gggagataga agtcctggga aggattagct caggaaccat aactctcgcc
     2101 tcgccgagtc cctgatgcgg gccctctcaa tttccacatg gcactggggc cacagagttg
     2161 aggacaaggc gagccagcac agatctggag actggaagag accattgtgc atacatcagt
     2221 gatgtgatag ggcaagtgca cgggttgttc cggatcctga gttgagagcc agcaaatgga
     2281 ggagatccga aaggcaagcc tctaggattt ggaaggactg gctgactgcc caggagggct
     2341 cgtagcgatt taaacttgcg taggctccta tgtacctgtc gctaaataga tgaactcaaa
     2401 ggacaggaat tttcttcagt ttaagcatgc gcagtgggcg cttgagtaag ccttatggag
     2461 agagctaaga ggggagccgg cgtagggccg cgtggcctaa tggataaggc gtctgattcc
     2521 ggatcagaag attgggggtt cgagtccctt cgtggtcgct gcttgtattt gttttctaaa
     2581 aacctatttt aaaa
//
