LOCUS       NM_001107065            4879 bp    mRNA    linear   ROD 26-FEB-2024
DEFINITION  Rattus norvegicus cask-interacting protein 2 (Caskin2), mRNA.
ACCESSION   NM_001107065 XM_001081695 XM_221120
VERSION     NM_001107065.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 4879)
  AUTHORS   Gaudet P, Livstone MS, Lewis SE and Thomas PD.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from CH473948.1.
            
            On or before Oct 4, 2007 this sequence version replaced
            XM_001081695.1, XM_221120.4.
            
            ##Evidence-Data-START##
            RNAseq introns :: mixed sample support SAMD00132261, SAMD00132262
                              [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..4879
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="10"
                     /map="10q32.1"
     gene            1..4879
                     /gene="Caskin2"
                     /note="cask-interacting protein 2"
                     /db_xref="GeneID:303678"
                     /db_xref="RGD:1309738"
     exon            1..127
                     /gene="Caskin2"
                     /inference="alignment:Splign:2.1.0"
     exon            128..627
                     /gene="Caskin2"
                     /inference="alignment:Splign:2.1.0"
     CDS             534..4136
                     /gene="Caskin2"
                     /codon_start=1
                     /product="caskin-2"
                     /protein_id="NP_001100535.1"
                     /db_xref="GeneID:303678"
                     /db_xref="RGD:1309738"
                     /translation="MGREQDLILAVKNGDVTCVQKLVAKVKAAKTKLLGSTKRLNINY
                     QDADGFSALHHAALGGSLELIALLLEAQATVDIKDSNGMRPLHYAAWQGRLEPVKLLL
                     RASAAVNAASLDGQIPLHLAAQYGHYEVSEMLLQHQSNPCLVNKLKKTPLDLACEFGR
                     LKVAQLLLNSHLCVALLEGEAKDPCDPNYTTPLHLAAKNGHREVIRQLLKAGIEINRQ
                     TKTGTALHEAALYGKTEVVRLLLEGGVDVNIRNTYNQTALDIVNQFTTSQASREIKQL
                     LREASGILKVRALKDFWNLHDPTALNIRAGDVITVLEQHPDGRWKGHIHESQRGTDRV
                     GYFPPGIVEVVSKRVGIPVTRLPSAPTLLRPSFSRISQPSADDPLPSLTYGQLPRVGL
                     SPDSPAGDRNSVGSEGSVGSIRSAGSGQSSEGTNGHSTGLLIENAQPLPSANEDQVLP
                     GLHAPSPADNLSHRPLASYRSGEIFTQDVRPEQLLEGKDAQAIHNWLSEFQLEGYTAH
                     FLQAGYDVPTISRMTPEDLTAIGVTKPGHRKKIASEIAQLSIAEWLPNYIPVDLLEWL
                     CALGLPQYHKQLVSSGYDSMGLVADLTWEELQEIGVNKLGHQKKLMLGVKRLAELRRG
                     LLHGEALGEGGRRMTRGPELMAIEGLENGDSPATAGPRLLTFQGSELSPELQAAMAGG
                     GPEPLPLPPARSPSQESIGARSRGSGHSQGQPGSQPNAGEPSAPQERNLPEGTERPFK
                     PCSPLPGQGPAPYVFMCPQSLPSSPAPAPPPGVPRAFSYLAGSSAAPPDPPRPKRRSH
                     SLSRPGPAEGEAEGEAEGPVGSALGSYATLTRRPGRSTLARTSPSLTPTRGTPRSQSF
                     ALRARRKGPPPPPPKRLSSVSGSTEPTSLEGTSGPKEGAAGPRRRTLSEPTGPSESPA
                     PSAPTGPVSDTEEEEPVLEGTPPSRGSSGEGLPFAEEGNLTIKQRPKPAGPPPRETTV
                     PPGLDFNLTESDTVKRRPKCKEREPLRTALLAFGVVGSDTPGPSTPLSSQAPCEAPSA
                     PSNPPRSEPSSLPSQEAPAPLSPVTQPPGHPGPSAGPGLETSTGSRQNVDTEPPAPPA
                     ALLKVPGAGTAPKPVSVACTQLAFSGPKLAPRLGPRPVPPPRPENTGPVCPGRAQQRL
                     EQTSSSLEAALRAAEKNIGSEEQDGPTGPSTKHILDDISTMFDALADQLDAMLD"
     exon            628..679
                     /gene="Caskin2"
                     /inference="alignment:Splign:2.1.0"
     exon            680..777
                     /gene="Caskin2"
                     /inference="alignment:Splign:2.1.0"
     exon            778..923
                     /gene="Caskin2"
                     /inference="alignment:Splign:2.1.0"
     exon            924..1019
                     /gene="Caskin2"
                     /inference="alignment:Splign:2.1.0"
     exon            1020..1150
                     /gene="Caskin2"
                     /inference="alignment:Splign:2.1.0"
     exon            1151..1259
                     /gene="Caskin2"
                     /inference="alignment:Splign:2.1.0"
     exon            1260..1368
                     /gene="Caskin2"
                     /inference="alignment:Splign:2.1.0"
     exon            1369..1463
                     /gene="Caskin2"
                     /inference="alignment:Splign:2.1.0"
     exon            1464..1725
                     /gene="Caskin2"
                     /inference="alignment:Splign:2.1.0"
     exon            1726..1847
                     /gene="Caskin2"
                     /inference="alignment:Splign:2.1.0"
     exon            1848..1908
                     /gene="Caskin2"
                     /inference="alignment:Splign:2.1.0"
     exon            1909..1997
                     /gene="Caskin2"
                     /inference="alignment:Splign:2.1.0"
     exon            1998..2108
                     /gene="Caskin2"
                     /inference="alignment:Splign:2.1.0"
     exon            2109..2210
                     /gene="Caskin2"
                     /inference="alignment:Splign:2.1.0"
     exon            2211..2349
                     /gene="Caskin2"
                     /inference="alignment:Splign:2.1.0"
     exon            2350..3822
                     /gene="Caskin2"
                     /inference="alignment:Splign:2.1.0"
     exon            3823..4045
                     /gene="Caskin2"
                     /inference="alignment:Splign:2.1.0"
     exon            4046..4879
                     /gene="Caskin2"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 tgcgggaggc gccgagccgg ccctgaaaag gaggagaaag gggttgcggg ggacagtgga
       61 agccagagtc cagagtgcct ggaattgagc accgccagcc ggacccccgg tggggcggcc
      121 gggagagacc cccaggactt atccatggct gctgcctcgt gccacaggga atgctgactg
      181 ctctctgggt gggcacttgt ccttctgagc caacccagga agattggcgg gcccagtccc
      241 agtcccagct catttcaggg ctgtcggaag ctgcaagctg atctcaggcc agatttccac
      301 aaagcctcca ccccaccagg gactggcttt cctgcctgtg gtggcagctc ccagagcacc
      361 ttgagggact atatctctgc ctgacgagga gcacattgcc tgagacacca gacttgttcc
      421 cccaagacca agagtcctcc aaatcattga ggcatggcga actgacattt gactgggccg
      481 gtcccttgct tcttcctgga ctctgaagcc cagagcctgg cccggtagtc agaatgggcc
      541 gtgaacagga ccttatcctt gctgtcaaga atggagacgt gacctgcgtg cagaagctgg
      601 tggctaaagt gaaggctgca aaaacaaagc tccttggctc cacgaagaga ctcaacatca
      661 actaccagga tgccgatgga ttctctgccc tccaccatgc tgccttgggg ggcagcctgg
      721 agctcatagc cttgctgctg gaggctcaag ccactgtgga catcaaggac agcaatggca
      781 tgcgtcccct acactatgcg gcctggcagg gccggctgga gcctgtgaag ctgctgctga
      841 gggcgtccgc ggctgtcaat gctgcctctc tggacggtca gatccctctg cacctggctg
      901 cacagtatgg gcattatgag gtgtcagaga tgcttctcca gcaccagtct aacccgtgcc
      961 tagtcaacaa gttgaagaag acacccctag acctagcctg tgaatttgga cggctcaagg
     1021 tggcccagct gcttttgaac agccacttat gtgtggcatt gctggaggga gaggcaaagg
     1081 acccatgtga ccccaactac accacacccc tgcacttggc tgccaagaat ggccacagag
     1141 aagtcatcag gcagctcttg aaagccggta ttgagatcaa ccgccagacc aagaccggca
     1201 ctgccctcca cgaggccgcg ctctacggca aaactgaggt ggtgcggctg ctgctggagg
     1261 gaggtgtgga tgtgaatatc cggaacacat ataaccagac agcactggac atagtgaatc
     1321 agttcaccac ctcccaggcc agccgggaaa tcaagcagct acttcgggag gcttcaggga
     1381 tcttgaaggt tcgagcgctt aaggatttct ggaatcttca tgaccccact gctctcaata
     1441 tccgggcagg agatgtcatc acggtgcttg aacagcatcc tgatggccgc tggaagggcc
     1501 acatccacga gagccaaagg ggcacagacc gtgttggcta cttccccccg ggcatcgtcg
     1561 aggtggtcag caagcgggtg ggcataccgg tgacccgtct cccctctgca cccaccctgc
     1621 tgcggccaag cttctcccgg atatcacagc catcggctga tgatcccctg ccatctctca
     1681 cctacggcca gctccctcgg gtgggcctca gcccagacag tccagcaggt gacaggaaca
     1741 gcgtgggcag cgaggggagc gtgggcagca tccgcagcgc tggcagtggg cagagctctg
     1801 aaggcaccaa tggccatagc actggtctcc tgattgaaaa tgctcagcca ctaccctctg
     1861 ccaatgagga ccaggtactg ccaggtctgc atgccccgtc cccagcagac aacctgagcc
     1921 accgtcctct ggccagttac cgctctgggg agatcttcac ccaggatgtg agaccagaac
     1981 agctgctcga agggaaggac gcacaggcca tccataactg gttaagtgaa ttccagctag
     2041 agggctacac tgcccacttc ctgcaggccg gctatgacgt gccaaccatc agccggatga
     2101 cacctgagga tctgacggcc attggagtga ccaagcccgg acacaggaag aagatcgcct
     2161 cagagattgc tcagctcagc attgctgaat ggctgcccaa ctatatcccg gtggacttgt
     2221 tggagtggct gtgtgcactg gggctgccac agtaccacaa gcaactggtg agcagcggct
     2281 atgactccat ggggctggtg gccgatctca cctgggagga gctgcaggag atcggcgtga
     2341 acaagctagg ccatcagaag aagcttatgc taggtgtgaa gaggctagca gaacttcggc
     2401 ggggcctact gcatggcgaa gccctaggtg aaggtggacg ccggatgacc aggggtcctg
     2461 agctgatggc cattgaaggc ctggagaacg gggacagtcc agctacggcc ggccctcgcc
     2521 tcctcacctt tcagggcagt gagctgagcc cagagctaca ggcagctatg gcggggggtg
     2581 gcccagaacc actacccctt ccccctgccc gttctcctag ccaggagagc attggtgcac
     2641 gctccagggg atctggtcat tcacagggac agcctggctc ccagcccaat gctggtgagc
     2701 ccagtgcccc acaggagagg aaccttcctg agggtacaga gcgccccttt aagccttgct
     2761 ctccactccc tggccaagga cctgcccctt atgtctttat gtgtccacag agcctaccct
     2821 ctagcccggc cccagcacca cctcctggtg ttccccgggc cttctcctac ttggctggct
     2881 cttctgccgc tcctccagac ccaccccggc cgaaacgccg gtctcacagc ctgagccgcc
     2941 ctggccctgc tgagggggag gctgaagggg aggctgaagg gccagtgggt agtgctttgg
     3001 gcagctatgc cacactgact cggagaccgg gacgcagcac ccttgcccgg actagtccta
     3061 gcctgacccc aactcgaggg actccccgaa gccagtcctt tgccctccgt gcccgtcgta
     3121 aaggtccccc gcccccgccc cccaagcgcc tcagttccgt ctctggctcc actgagccaa
     3181 cttcactaga ggggacctca gggcccaagg aaggggccgc aggtccccgg aggagaacac
     3241 tgagtgaacc aaccggcccc tcagagtccc ctgctccttc tgcgccaact ggccctgtgt
     3301 cggacactga ggaagaggaa cctgtccttg aggggacacc gccttctcgg ggcagctcag
     3361 gggaagggct gccatttgca gaggaaggga acctgactat caagcagcga ccgaaaccag
     3421 ccggtccccc tccccgtgag acaactgtgc cccctggcct tgacttcaat ctcacagagt
     3481 cagacacggt caaacgcagg cccaaatgca aggagagaga gccactacgg actgcactgt
     3541 tggcctttgg ggtagtgggc agtgataccc ctggcccctc cactcccctg tcctcccagg
     3601 ccccgtgtga agctccctca gctccctcta accctccacg gtctgagccc agcagccttc
     3661 catctcaaga agccccagct cctctcagcc ccgtaactca gccccctggg cacccagggc
     3721 ccagtgctgg accaggtctg gaaacctcaa caggcagtag acagaacgtg gacacggagc
     3781 ctccagctcc ccccgctgcc ctcctcaaag tgcctggagc aggaacagct cccaagcctg
     3841 tgtctgtggc ctgcactcag ctggcatttt ctggcccaaa gctggctccc cggctcggcc
     3901 ctcgcccagt tccccctcca aggcctgaga ataccgggcc tgtgtgtcca ggtcgggccc
     3961 aacagagact ggagcagacc agctcatcct tggaagctgc actgagggcg gctgagaaga
     4021 acattggctc tgaggaacaa gatggcccca cagggccatc caccaagcac attctggacg
     4081 acatcagtac catgtttgat gccctggctg accagttgga tgccatgctg gactgagcaa
     4141 aacttggcct gtgactctcc ctcctgtcag cgttcactgc ctgtgaccca gcatggagga
     4201 agcccttgcc acgcaaggaa caggcagagg ctggtttggg ctggggtatc cttccatggc
     4261 agaggcctcc tatggctcca agcggtggct ggcagtccca aagaggctga gaggactcgt
     4321 cagaacctga ctgagtgagg ggcctcagct gtgggagtga ggccttccca tgcgcagctg
     4381 actgcacagc tatggcccct gaacagggac cctcgtggaa gcattctcct ctaggaggag
     4441 gtggcgacag ggatttgggg atgcacctct tgccgtgtct aaagtcccca tggcctggga
     4501 atttgtctgg ctacccactg agttacccta gggctctgtg aggctgtgtg cttggccagt
     4561 cccctctatg caggtgtata taggtgatgt acatatgcac caggggcatg ccttcctgct
     4621 ggtggccttc tgctcctgtc tggccatctc acactgggag gcagggctag ccaggatcag
     4681 aggcaataag agtaataggt ccccagtgtc cagactctta caactgtaca tagtattttt
     4741 caagcagaga gaaaggcata tattttaaat ggaatttatt ctatctatta actgcctgag
     4801 aggatgcagt aggggaaggc cttcgggcta cagaagaacc gtctacccac ctcctgctgg
     4861 aggacccagt tggtctagc
//
