LOCUS       XM_017600539            5747 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus capping protein regulator and myosin 1
            linker 1 (Carmil1), transcript variant X7, mRNA.
ACCESSION   XM_017600539
VERSION     XM_017600539.2
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051352.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Jan 21, 2021 this sequence version replaced XM_017600539.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5747
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="17"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..5747
                     /gene="Carmil1"
                     /gene_synonym="Lrrc16; Lrrc16a"
                     /note="capping protein regulator and myosin 1 linker 1;
                     Derived by automated computational analysis using gene
                     prediction method: Gnomon. Supporting evidence includes
                     similarity to: 27 ESTs, 3 long SRA reads, 1 Protein, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 22 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:306941"
                     /db_xref="RGD:1306623"
     CDS             654..4865
                     /gene="Carmil1"
                     /gene_synonym="Lrrc16; Lrrc16a"
                     /codon_start=1
                     /product="F-actin-uncapping protein LRRC16A isoform X7"
                     /protein_id="XP_017456028.1"
                     /db_xref="GeneID:306941"
                     /db_xref="RGD:1306623"
                     /translation="MTDESSDVPRELMESIKDVIGRKIKISVKKKVKLEVKGDRVENK
                     VLVLTSCRAFLLSARIPTKLELTFSYLEIHGVICHKPTQMVVETEKCNVSMKMASLED
                     ASDVLAHIGTCLRRIFPGLSPLRIMKKVSMEPSERLASLQALWDSQTLAEPGPCGGFS
                     QMYACVCDWLGFSYREEVQWDVDTIYLTQDTRELNLQDFSHLEHRDLIPIIAALEYNQ
                     WFTKLSSKDLKLSTDVCEQILRVVSRSNLLEELVLENAGLRTDFAQKLASALAHNPNS
                     GLHTINLAGNPLEDRGVSSLSIQFAKLPKGLKHLNLSKTSLSPKGVNSLCQSLSANPL
                     TASTLTHLDLSGNVLRGDDLSHMYNFLAQPNTIVHLDLSNTECSLEMVCSALLRGCLQ
                     CLAVLNLSRSVFSHRKGKEVPPSFKQFFSSSLALIQINLSGTKLSPEPLKALLLGLAC
                     NHSLKGVSLDLSNCELGHCLRSGGAQVLEGCIAEIHNITSLDISDNGLESDLSTLIVW
                     LSRNRSIQHLALGKNFNNMKSKNLTPVLDNLVQMIQDEDSPLQSLSLADSKLKTEVTI
                     IINALGSNTSLTKVDISGNSMGDMGAKMLAKALQINTKLRTVIWDKNNITAQGFQDIA
                     VAMEKNYTLRFMPIPMYDASQALKTSPEKTEEALQKIENYLLRNHETRKYLQEQAYRL
                     QQGIVTSTTQQMIDRICVKVQDHLNSLRACGGDAIQEDLKAAERLMRDAKNSKTLLPN
                     LYHVGGASWAGASGLSSSPIQEILESMAGEVTRVVDEQLKGLLESMVDAAENLCPNVM
                     RKAHIRQDLIHASTEKISIPRTFVKNVLLEQSGIDILNKISEVKLTVASFLSDRIVDE
                     ILDSLSNSHRKLANHFSRLSKSLPQREDLEVELVEEKPVKRAILTVEDLTEVEKLEDL
                     DTCMTLCCTSMTPKSKRKSIHSRMLRPVSRAFEMEFDLDKALEEVPIHIEDPPFPSVR
                     QEKRSSGLISELPSEEGRRLEHFTKLRPKRNKKQQPTQAAVCSINIIPHDGEQNGLMG
                     RVDEGVDEFFTKKVTKMDCKRSSTRCSDTHDLVEGDEKKKRDSRRSGFLNLIKSRSRS
                     ERPPTVLMTEELSSPKGAVRSPPVDTARKEIKAAEHNGAPERTEEMRTPEPLEEGLAE
                     EAGRAERSDSRGSPQGGRRYVQVMGSGLLAEMKAKQERRAACAQKKLGNDVISQDPSS
                     PVMSNTERLDGGATVPKLQPGLPEARFGLGTPEKNAKAEPRVDGGCRSRNSSSMPTSP
                     KPLLQSPKPSPAARPSIPQKPRTASKPVSLDKERDDQSSSQSSPRTFSQEVQRGDHFK
                     RHSDHDKPSSRGKRSSKLCFAIAEEEVNAPGYRKSQPTNVSRRSWGPAQEYQEQKQRN
                     LGKDGHQGSKSSDSGEEAEKEFIFV"
ORIGIN      
        1 gccgcagcag tcagggcagc agccaccgca gcggagcacc gcatcggtcc ccgggctgtg
       61 ccccgcgccg ggcacggtgc gcccaggccc ggaggccggc cggggacccg tgcggaggcc
      121 gctctcgcga ggcggggagg agacgcaggg ggaccaggag gaggagcagg agagggtgaa
      181 ggagaggagg aggagcggga gaaggggaag gaggagagcc gagccggccc gcccctgccc
      241 agcccagccc gcaggaggcc gagaccagcc cggcggccca gccctcgcct tccgcttcac
      301 ctacgcccaa ggtgcggcgc agaggccggg ctgcgcggcg cccgccccgg gagaagccag
      361 tgctgcagcc gccttgcgtt cggcccctgg agctgcgagc cgagaaggcg gcatgtagct
      421 gcggccgcag agccagctcg gatttgcaac tcttagggtt tttttttttt tttttttctt
      481 ttggtactga gggcgcgcgg caaccttgga tcaacgcccc gctgctccgg ccggcccact
      541 ctttccttgc aagctgcggc ttcctcgcgg aaacattaac gggtctgggg aagggcgcgg
      601 ggccgagaat cagagagtgg gacccgagat ctccccgcgc ccagtgggca accatgaccg
      661 acgagagctc cgatgtcccc cgggagttaa tggaaagcat caaggatgtt attggcagaa
      721 agatcaaaat ctcggtgaag aagaaagtga agttggaagt gaagggtgac agagtggaga
      781 acaaagtgct ggtgctcaca tcatgccgag ctttcctcct gtcagcacgc atccccacca
      841 agctcgagtt aaccttcagc tatctagaga ttcatggagt catctgccac aaacctactc
      901 agatggttgt ggaaactgag aagtgtaacg tgtccatgaa gatggcgtca ctggaggatg
      961 cgagtgatgt gctggctcac ataggcacct gcttacggag gatatttccg ggcctttccc
     1021 cactgagaat catgaagaaa gtctccatgg agccatctga gcgcctggcc agtctccagg
     1081 ccctgtggga cagccagacc ttggctgagc caggcccctg tggtgggttt tctcagatgt
     1141 atgcctgtgt atgcgactgg ctgggatttt cgtacaggga agaagtgcag tgggatgtgg
     1201 atacaattta tctgacacaa gataccaggg aattaaattt acaagacttc agtcatctcg
     1261 agcacagaga cctgattccc atcatcgctg ccctggaata taaccaatgg ttcaccaaac
     1321 tgtcctccaa ggatctcaag ctgtccacgg atgtctgtga acagatcttg agggtggtga
     1381 gtaggtccaa tctactggaa gagttggtgt tggaaaatgc tggactcaga acagattttg
     1441 cacagaaatt ggccagtgct ctagcacaca atcctaactc aggacttcac acaatcaacc
     1501 ttgctgggaa cccgctggag gatcgaggcg tgtcctcctt aagtattcaa tttgccaaac
     1561 tcccaaaggg attgaagcat ttgaacctgt ctaaaacctc attgtcacct aaaggggtga
     1621 atagcctttg tcagtccctc agtgccaacc ctctgactgc ctctaccctc acccacctgg
     1681 acctctcagg gaatgtcctc cgaggagatg acctctcaca catgtacaat tttttggccc
     1741 agcccaacac cattgttcat ctggatctgt ctaatactga atgttctctg gagatggtgt
     1801 gtagtgctct cctccgggga tgccttcagt gtctggccgt gctcaatctc tccaggtctg
     1861 tcttctctca caggaaagga aaggaagtcc ctccgtcttt caagcagttt ttcagcagtt
     1921 ctctggcttt gatccaaatc aatctttcag gcacaaaact gtctcccgag cccttgaagg
     1981 cattgctcct gggcctggcc tgcaatcata gtttgaaggg agtctctctg gatctcagca
     2041 attgtgagct tggccactgt ctgaggtccg gaggagctca agtgttagaa ggctgtatcg
     2101 ctgaaatcca caacatcacc agcttagata tctctgacaa cggtttagaa tctgacctat
     2161 ctaccctgat tgtgtggctc agtagaaaca gatcaataca gcacctggcg ttaggcaaaa
     2221 attttaacaa tatgaaatcc aaaaatctga cgcctgtgtt ggacaactta gtgcagatga
     2281 tccaagatga agactctcct ctgcagtcct tgtccctggc tgactcaaaa ctcaagactg
     2341 aagtcaccat catcatcaat gccttgggca gcaacacctc cctgaccaaa gtggacatca
     2401 gtgggaatag catgggggac atgggagcga agatgctggc taaggctcta cagatcaaca
     2461 ccaaactcag gacagtcatc tgggacaaaa acaacattac tgcacaaggc ttccaagaca
     2521 tagccgttgc tatggaaaag aactacacac tgagatttat gccaattcca atgtatgatg
     2581 cttctcaagc tcttaaaaca agccctgaga agacagaaga ggctctgcag aagatagaaa
     2641 attatctgct ccggaatcac gagaccagga aataccttca ggagcaggcc taccgcctcc
     2701 agcaaggcat tgtcaccagc accacccagc agatgattga ccggatatgt gtgaaggttc
     2761 aggatcacct caactcctta cgagcctgtg ggggggatgc tattcaggag gatttaaagg
     2821 cagcagagcg gctcatgcga gatgctaaga attctaaaac gttgttacca aatttatacc
     2881 atgtgggcgg agcatcatgg gcaggagcca gtgggctgtc atccagtccc attcaggaga
     2941 tcctggagtc aatggccgga gaagtcacaa gagttgtgga tgaacaactg aagggtttgc
     3001 tagaatctat ggtggatgcg gccgagaacc tctgccccaa tgtcatgaga aaagcccaca
     3061 tccgacaaga cctgatccac gccagcaccg aaaagatttc cattccacga acctttgtta
     3121 aaaatgtcct gttggaacag tctggaattg acattcttaa caaaattagt gaggtgaagc
     3181 tgacagtggc ctcgttcttg tctgaccgaa tcgtagatga gatcctggat tctctctcca
     3241 acagccatcg gaagctggcc aaccatttca gcaggctaag caagagcctt ccccagcgag
     3301 aggacctaga ggtggagctg gtggaggaaa agccggtgaa acgggccata cttacggttg
     3361 aggatctcac tgaggtggag aagctggaag acctagacac ttgtatgact ctctgctgta
     3421 caagtatgac tcctaagtcc aagaggaaga gcatccacag ccgaatgctg cggcctgtct
     3481 ccagggcctt tgaaatggag tttgatcttg ataaagccct ggaagaggtg ccgattcaca
     3541 tcgaagaccc gcctttccca tcagtccggc aggagaagcg aagctcgggc ttgatctctg
     3601 agctgccctc agaggaaggc aggagactgg aacacttcac caagttaagg cccaagagga
     3661 acaagaagca gcaacctaca caagcagcgg tctgtagcat caacatcatc ccccatgatg
     3721 gagaacagaa tggcctcatg ggcagagtgg atgaaggtgt agatgaattt ttcaccaaga
     3781 aggtgactaa aatggattgc aagaggtcat ccacgcgctg ttcagatacc cacgacctcg
     3841 tagaaggaga tgagaagaaa aaacgggatt ctcggagaag tggctttctc aacctaatta
     3901 aatccaggtc cagatctgag cggccgccca cggtcctgat gacagaagag ctctcctccc
     3961 cgaaaggggc agtccggagc ccaccagtgg ataccgccag gaaggagata aaggcagctg
     4021 agcacaatgg tgctccagaa cgcacagagg agatgaggac accggagccc ctggaggagg
     4081 gtctagcaga ggaagctggc agggctgagc gcagtgacag caggggcagc ccacagggtg
     4141 gccggcgcta tgtgcaggtg atgggcagcg ggctgctggc ggagatgaag gctaaacagg
     4201 agcggagagc agcatgtgcg cagaagaagc ttggcaacga tgtcatctcc caggatccct
     4261 ccagcccagt catgagcaac acagagcgat tagatggagg ggcaacagtg cctaaactgc
     4321 aaccaggtct tccagaggcc cgctttggtt tgggaacacc agaaaagaat gccaaagctg
     4381 aacccagggt ggatggaggc tgcaggtccc gaaactcctc cagcatgccc accagcccga
     4441 agcccctcct tcagtcccct aagcccagcc ctgcagcccg gccgtctatc cctcagaagc
     4501 caagaactgc ctccaaacct gtctccttgg acaaagagcg tgatgaccag agcagctcac
     4561 agtccagtcc taggaccttc tcccaggaag tgcagagagg agatcatttc aaaaggcatt
     4621 cagatcatga caagccttcc agtagaggga aaagatcttc aaaactctgc ttcgccattg
     4681 cggaagagga agtgaatgca cctgggtaca ggaagtcaca gccaacaaat gtctcaagga
     4741 gaagctgggg cccagcccag gagtatcaag aacaaaagca acggaacttg ggcaaagatg
     4801 gtcaccaggg gagcaaatcc agtgactctg gagaagaggc agaaaaagag tttatttttg
     4861 tgtaatataa tggtgcccac cccaagcctt cccatgcaag gtgctctctg cagccctcag
     4921 atgcagggtt ctctctgcgg ccctcagagc tgggagcagt gcctcttgtc tcttctcttg
     4981 gtgctttctt ctttttctcc ttttcttctt tttcttatac ctctatatta aaacaaattt
     5041 ttggtcttct ccccttcttg gcatttgatt tctaaacatt gtttcttatg ccttcaacaa
     5101 aaagccagca attattccat gggccctact tgaatttctc taaggcagct acacattgcc
     5161 ctgcacggtg agttgttttt ggaaattaat gaagtaactg gactcacacc caagtaacta
     5221 tccaggagat cctggagtgc tacagggtgt gtttgtgtca gacccacaca tgactcaata
     5281 tagcaattta ttcttgatgt atgcaattgc acattgtaat tatattaaca gcacactaat
     5341 aaataatttg tataaattat atatatatta gatcttgggc actgttctta acattctttt
     5401 gtgggacatt tccttcccca tgtagaattg tacatttaaa gcttgtttgg taatatttgc
     5461 agaccatcag caagcacagc taagaacaga gtgtgtgaag cccagattca tgtatatagt
     5521 tgattggaat gaggtcttat gaatattcat gtttttgaag gcctttaatt tctgtctgct
     5581 tattagtttt taatgtgtgg tttttaaaag aaaatgttgg cacctgtaaa aaaaaatcta
     5641 aatactactc tttataaatc atctcacaaa tattcactta cattacaagc tgaaagtatt
     5701 ttattcatat gtatatttat accaataaaa tgattttaca agtggaa
//
