LOCUS       NM_001395067            5874 bp    mRNA    linear   ROD 27-MAR-2024
DEFINITION  Rattus norvegicus caspase recruitment domain family, member 6
            (Card6), mRNA.
ACCESSION   NM_001395067
VERSION     NM_001395067.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000002.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26643292.7893.1,
                                           SRR26643284.2625.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN16676785, SAMN16676787
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-451               JAXUCZ010000002.1  55933872-55934322   c
            452-979             JAXUCZ010000002.1  55929171-55929698   c
            980-5874            JAXUCZ010000002.1  55921832-55926726   c
FEATURES             Location/Qualifiers
     source          1..5874
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="2"
                     /map="2q16"
     gene            1..5874
                     /gene="Card6"
                     /note="caspase recruitment domain family, member 6"
                     /db_xref="GeneID:294770"
                     /db_xref="RGD:1305805"
     exon            1..451
                     /gene="Card6"
                     /inference="alignment:Splign:2.1.0"
     CDS             169..3549
                     /gene="Card6"
                     /codon_start=1
                     /product="caspase recruitment domain-containing protein 6"
                     /protein_id="NP_001381996.1"
                     /db_xref="GeneID:294770"
                     /db_xref="RGD:1305805"
                     /translation="MASEGASSEIIEKQRTKLLSVLQQDPDSILDTLTSRRLISEEEY
                     ETLEAITDPLKKSRKLLILIQKKGEDSCCCFLKCLSNAFPQSASTLGLKQEVPRQGTG
                     EVVEVSRGLEDPFSLGTITPEIAELSEEKECPGLGAPEFFTCKESSHREPEVPSWENQ
                     EGRGAQQVTAPRSVKGVEYEVPASISLLSDGQRYEEPDDSLYLEEGEGEESLGYPEDV
                     LEEGAGDDPQCFVYDSEEECEYEENMGSSGEDSSCDDTSETCVPLEGEKSAEERKRVF
                     QHVLSCLNMDRNRKLLPEFVRQFSIDRGCEWTPKTPGDLAWNFLMKVQALDSTARDSI
                     LRPEVAGEENEELPAGIEKLGIGDPQTIHPLDVLCACMLCADSSLQREVMSNMYQCQF
                     ALPLLLPDAENNKNLLMVGAMKDLKQPSAQSSGGPLRETDTFLGLTKMPVISFVRLGR
                     CSFSKSRIVNTLLSSSQQKPYPIFLHQDLSVPVLPRQISDGLVEVTWCFPDKLLKESP
                     HAFQKPVAVANLRGDLESFWIQFGFLVEVSSGLFFFTDCLGEKEWDLLMFLGEDTIER
                     CYFILSPQAKESEEAQIFQRILKLKPSQLLFWEAEEAGDRRKTMEALQAALQEVMSSP
                     LRCVSLEEMASLARELGIQVDQDFEVTQDIQVSPTTVEGENQQPCSQTKSPAESGAQE
                     PIREPGAQCDDSQNAPVFHQTPVYMPYPAHPWPLPIKAGGNFYHVPLNAPWVMGSHFG
                     SQQRAKWFFPFPHQNTSVHSRGQNFSIKYFQPWRCYSRGRFTNCSAKSQQNQNGPFGR
                     SQRQTSHPENRQTSRTRQRSGTAASHVGHIHSSGSQATKATGKPHSEKARAQGMQLTK
                     AAGKSIRTQSHIKHPHPQPCQPAGAIQERIIPTSHQEAQRTTQGRPSDLAFKPGSQST
                     SGNKHSSASQYNSHPPNFQSKHFQPKPFQPVPSHSQPSQAKPTHLNPSPANYTHVQPS
                     HAKPTHSKAFQANSHHPHPSHAKPTHLNPSHANPTHVQPSHAKPTHSKAFQAKPTPSQ
                     TSWSQANSNHPHPSLAKPSHPNPSHANPTHVQPSHAKPAHLQSSQTKPSPSQSTQFTA
                     HKPQQSQSKPSQQRPSQPKSSQTKPSQARASHPRAGRR"
     exon            452..979
                     /gene="Card6"
                     /inference="alignment:Splign:2.1.0"
     exon            980..5874
                     /gene="Card6"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gctccgggct gacttccctt ccagtgtttg ttcctctctg ctctctccaa cagaaggtat
       61 ttttggcatg ttttatcttt gctaagtagg atttctgtct ttctttgtta acacagattt
      121 ctttctgtgc cagaatgacc tgatccattt cctggtttgt agaaagccat ggcttcagag
      181 ggtgcttcct cagaaatcat agaaaaacag cgaacaaagt tgctcagtgt cctccaacaa
      241 gatcccgact ctatcttgga cacgttaacc tctcggagac tgatttctga ggaggagtat
      301 gagactctag aggcaattac agatcctctg aagaaaagcc ggaagctgtt aattttgatc
      361 cagaagaagg gagaggacag ctgttgttgt ttcctcaagt gtctgtctaa tgcctttcca
      421 cagtcagctt ccaccttggg tttaaagcag gaagttccac ggcaggggac tggagaggtt
      481 gtcgaggtga gcaggggttt ggaagatccc ttttctcttg ggaccataac cccagaaata
      541 gcagagctct cagaagagaa agaatgcccg ggtctgggag ctccggagtt cttcacctgc
      601 aaggaaagca gccacaggga accggaagta ccttcttggg agaatcagga agggcgtggt
      661 gcacagcaag tcaccgctcc gcgttcagtc aaaggagttg agtatgaagt tccagcaagt
      721 atctccctct taagcgacgg gcagagatac gaggagccag atgattcgct gtacttagaa
      781 gaaggggaag gtgaagagtc tcttgggtac cctgaagatg ttttggagga aggggccggc
      841 gatgacccac agtgctttgt atatgatagt gaggaggaat gcgagtatga ggaaaacatg
      901 ggctcctccg gtgaagacag tagctgcgac gacacttcag agacctgcgt tccattggaa
      961 ggggagaaaa gcgctgaaga aagaaaaaga gtgtttcaac acgtcctgtc ctgtttgaac
     1021 atggatagaa acagaaagct tctcccagag ttcgtgaggc agttttccat agaccgagga
     1081 tgtgagtgga cacccaagac cccaggagac ttagcttgga atttcttgat gaaagttcag
     1141 gctttagact cgacagccag agattctatc ctgaggcccg aggtggcggg tgaagagaat
     1201 gaagaattgc cggctggaat agagaagtta ggcattggag acccccaaac catccatccc
     1261 ctggatgtcc tctgcgcctg catgctttgt gcagacagct ccttgcagcg tgaagtcatg
     1321 tcaaacatgt accaatgcca gtttgctctt cccctgctac tgccagatgc tgagaacaac
     1381 aaaaacctct taatggtagg ggccatgaag gacttaaagc agccctcagc acagtcctca
     1441 ggagggcccc tcagggaaac agacacattt ctgggtctca caaagatgcc tgtcatctct
     1501 tttgtgcgac taggacgctg cagcttctcc aagtccagaa ttgttaacac actgctcagc
     1561 tcctcccagc agaaaccata cccgattttc ctccatcagg atctgtctgt ccctgtgctt
     1621 cctcggcaaa tttctgacgg cctggtggaa gtgacatggt gctttcctga caagttgctg
     1681 aaggaaagcc cgcatgcttt ccagaaacct gttgctgtgg ccaaccttcg tggagattta
     1741 gaaagctttt ggatacaatt tggtttcctg gtagaagttt cctccggtct tttctttttc
     1801 acagactgcc ttggtgagaa ggaatgggac ttgctaatgt ttttaggaga ggacaccatt
     1861 gaacggtgct actttatcct cagtccccag gctaaggaga gtgaagaagc ccagattttc
     1921 caaaggatcc taaaactgaa gccatctcag ctactgtttt gggaagctga ggaagctggg
     1981 gatagaagga agactatgga ggcccttcaa gctgccctcc aggaagtaat gtcctctcca
     2041 ctcagatgtg tgtcccttga agagatggcc tctctggcca gggagctggg cattcaggta
     2101 gaccaagact ttgaagttac tcaagatatt caagtttccc ccacaacagt tgaaggtgaa
     2161 aaccaacaac catgtagtca gaccaaaagc ccggctgaaa gcggagctca ggagccaatc
     2221 agagagccag gggctcaatg tgacgacagt cagaatgctc cggttttcca tcagactcca
     2281 gtatacatgc cttatccagc acacccatgg cctctgccca tcaaagctgg aggtaacttt
     2341 taccacgttc ctttgaatgc cccctgggtt atgggctccc actttggatc acagcagagg
     2401 gctaagtggt tctttccatt cccacaccag aatacaagtg ttcacagcag agggcaaaac
     2461 tttagtatta aatatttcca accctggaga tgttattcaa ggggaagatt cacaaattgt
     2521 tcagcaaagt ctcagcagaa tcagaatgga ccatttggga gatcgcagag acagacttct
     2581 catcctgaga acaggcagac atccagaact cgtcagaggt ctgggacagc ggcctctcat
     2641 gttggtcaca tacattcttc tggttcacaa gcaacaaaag ccacagggaa gccacactct
     2701 gagaaagccc gtgcccaggg gatgcagctg actaaagcag ctggaaaatc tataaggaca
     2761 cagtcccata ttaaacatcc acaccctcag ccctgtcagc cagcaggagc cattcaagaa
     2821 cgaataatac ccacttctca tcaagaagcc caacgaacaa cacaggggag gccttcagat
     2881 ctggctttca aaccaggctc tcaatctaca tctgggaata aacattcatc tgcctcccag
     2941 tacaactccc atccacccaa cttccagagc aaacacttcc agcctaagcc ctttcaaccc
     3001 gtgccttctc actcccagcc ttcccaagct aaacccactc atctgaatcc ctctcctgct
     3061 aactacactc atgtgcagcc ttcccatgct aaacccactc actctaaggc cttccaagct
     3121 aactcccacc atccccatcc ctcccatgct aaacccactc atctgaatcc ctctcatgct
     3181 aaccccactc atgtgcagcc ttcccatgct aaacccactc actctaaggc cttccaagct
     3241 aaacccactc cctctcagac ctcttggagc caagctaact ccaatcatcc ccatccctcc
     3301 cttgctaaac cctctcatcc gaatccctct catgctaacc ccactcatgt gcagccttcc
     3361 catgctaaac ccgctcatct acagtcttcc caaacaaaac cctccccatc ccaatctact
     3421 cagttcacgg cacacaaacc tcagcagtcc cagtctaagc cttctcagca gagacccagt
     3481 cagcctaaat catcccagac caagccttca caggccaggg cctcccaccc aagagcaggg
     3541 agacgttaaa gaacatactc tggagatctg tgaaataaag tatggtcttt gcttaagtta
     3601 ttcttctcat atagcagtct gaagaaaagt tttagtgaaa gactgataaa agtagcaaaa
     3661 ccaaaaaaag ttatgcaaag tcttaagtgc atagcaaagt atccaagtgt ggaaaatatg
     3721 aaagcagtta aaagtagaat ctggctgggc atggtggcac acatctacag ggtttagcat
     3781 gggagggctc tgtcatccca actcaggaga agcaggcaga tctctgtgtg tttgaggcca
     3841 gtctggtcta cataacaacg acacagcaag tcctagatca gccatagtac aaaatgagac
     3901 cccatctggg gacaaaaggg ttggatctaa catcaaacca aagaaatcag tcagtattcc
     3961 agaaggcatc attaattaca ctcagtgggt taccacaacc aaaccaaacc gacaactaac
     4021 cccctaaagg agcaggaagg agtgggtggg tgttaggctg agcaggatgg ggaagagctg
     4081 aggatagata aggtcatcgt atacaggtat gggactgtca aatcataaat gcaagataag
     4141 aagcagtgga atctaaggct acataagctc agtgagtcca accctcccta ttagatgatg
     4201 tgagatttga acccagtgaa tggggtctgt ctgatagccc tgtgtgtgac aaactgtgta
     4261 attataaagt gatgaaaacg tggagttcag cttatctgtg ttgaagaaag gctgcttcag
     4321 aggtgccttg gttttgggtt tatgatcagc cactgagcag atactctgca ccattggtac
     4381 agttaaatca gcttgcttct ggtaatagcc ccaatctacc acatttatcc cttacaggcg
     4441 gaaataatga atgatcagca aaacatccaa ttttacctta accttggtac tgatttgtat
     4501 atgtatcatt ctttatataa tagctaagaa aatttagctc attaggggtt ctgatatatt
     4561 agtttaatgg tttgaagtca gaaatgtgtt agtttttaat tttagagtta attgaaaata
     4621 ttgagatgaa tttacaaagg ctataagtaa tgtttgagag ggttataatt tttgtagact
     4681 catactgttc tgaacatttg gatagcttct cgtagttagc agtgttatag aagaatatat
     4741 ttgattcagg tatttaacca gagctgctct tagtttttaa gtgtcaccaa gagtcaataa
     4801 aaggctacat tatctgaaca tgtgggaaca caactgtgac cttacactta agagactgag
     4861 gaagggaaat caaggttcaa gccagcagca catagtgaga ccaggtctca agacacaaaa
     4921 actatccacc ttaaggaaga ttttaaaatt tgcctcatta agaaataaag taagatttat
     4981 aaattggact aaatgtcaca tctttgaact tatgactgtt taattttttg acttaaagtt
     5041 taattttatt attgtatgcg tgtgttgtat gtgtgtgcac atgtgtgcca ctgcatgtat
     5101 gtggaggcca tcagacaatg ttgtagagtc tgttctttcc tcttagccct atgtgtttta
     5161 cccactgagc taggccacct actcctataa gtctaatttt aaatagtaaa atagttctaa
     5221 gaagtcaatc agggaaaaaa atggctgtca aagtctcaaa gaaaaatcgt attagccatg
     5281 gatagagact cacctcttga atcatttgtg tctgagaata gcctaatatc acaataatgt
     5341 gtttgtacat gtgttagtta atattgtttt cagagtattt aatctctcat gattattgta
     5401 aagatgaaaa aagaaatagt gggcaatgta tgtgagtatt taattttgcc tgacaattct
     5461 gtcttttaga atgataaatg taagaagtaa aataaaacgg ttcattctca gaacaactaa
     5521 gccagctcac ttaagtctgg gccctgctgg cattggctag tctagctacc cccacccaaa
     5581 cacaaaagtt tagagaagaa aatgactgag tcaagcttgc ctaatgactt ttggacataa
     5641 agtttatggt cctagaaagc cttaaaataa gtaggatata aaacatgtaa attaacccac
     5701 acattatgtg ggttgagaag cagaaaaatg tcagtagaac actcggccag tgcataaaga
     5761 aggaagagac ctctgttctg ggttataaaa ctgctctttg tgctcaattt gtcccctgct
     5821 tttgtttgcc agaatgtaca agattataaa ataaactcac ttttactttt ctga
//
