LOCUS       NM_001395581            3160 bp    mRNA    linear   ROD 29-MAR-2024
DEFINITION  Rattus norvegicus calcyphosine 2 (Caps2), mRNA.
ACCESSION   NM_001395581 XM_039079682
VERSION     NM_001395581.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000007.1.
            
            On Jul 20, 2021 this sequence version replaced XM_039079682.1.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26643293.39893.1,
                                           SRR26360181.1436659.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760389
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-385               JAXUCZ010000007.1  49467484-49467868
            386-521             JAXUCZ010000007.1  49468669-49468804
            522-636             JAXUCZ010000007.1  49477797-49477911
            637-686             JAXUCZ010000007.1  49479994-49480043
            687-732             JAXUCZ010000007.1  49482191-49482236
            733-849             JAXUCZ010000007.1  49482328-49482444
            850-1008            JAXUCZ010000007.1  49483743-49483901
            1009-1122           JAXUCZ010000007.1  49487052-49487165
            1123-1190           JAXUCZ010000007.1  49492090-49492157
            1191-1265           JAXUCZ010000007.1  49503151-49503225
            1266-1361           JAXUCZ010000007.1  49503907-49504002
            1362-1455           JAXUCZ010000007.1  49504090-49504183
            1456-1574           JAXUCZ010000007.1  49508216-49508334
            1575-1654           JAXUCZ010000007.1  49509680-49509759
            1655-1809           JAXUCZ010000007.1  49514639-49514793
            1810-1935           JAXUCZ010000007.1  49518743-49518868
            1936-2032           JAXUCZ010000007.1  49521019-49521115
            2033-3160           JAXUCZ010000007.1  49524338-49525465
FEATURES             Location/Qualifiers
     source          1..3160
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="7"
                     /map="7q22"
     gene            1..3160
                     /gene="Caps2"
                     /note="calcyphosine 2"
                     /db_xref="GeneID:366891"
                     /db_xref="RGD:1309826"
     exon            1..385
                     /gene="Caps2"
                     /inference="alignment:Splign:2.1.0"
     exon            386..521
                     /gene="Caps2"
                     /inference="alignment:Splign:2.1.0"
     exon            522..636
                     /gene="Caps2"
                     /inference="alignment:Splign:2.1.0"
     CDS             559..2208
                     /gene="Caps2"
                     /note="calcyphosphine 2"
                     /codon_start=1
                     /product="calcyphosin-2"
                     /protein_id="NP_001382510.1"
                     /db_xref="GeneID:366891"
                     /db_xref="RGD:1309826"
                     /translation="MDLEVKGVAAARSQTQLYSGRKNSLKQGWTSRSWAIQNSCLPMV
                     PPLDLGSLVDSDEEDKFSPAPRGTVHDAPRSQPTLSYIMPCQRPYIQHHLNEAEQDTI
                     PEDLPAPTGKYKLKYQQYASEMKDGYKQYIQRSAEKPKPGKGPEANKKVEGACLDDLI
                     TLDRKALLQQGYADSPYHRRSSAKKSDVETVALEKKRQTVAEQMMVDHLSRIRTNSTL
                     TENDLSQKVEFEGRVLSRNGRDACRELIGFFFAHDQSLTVYEYRMFGKNRTSVLPFIK
                     KDVYCHQYGQRKGEQYELGDFYTGATLTFLSCDHPSLPKSIKENALLRLRITSIDQVA
                     LDSLKAASAEPGREDPVSQEAQDQLVLQAIQEKLKEQLHTKGVRILTGLGKYFQRLDK
                     EGNGLLEKTDFQQALETFHLEVSEQDFESSWLILLGHGHSQNKVDYGEFKRAIFGEMN
                     EYRKSFVRKAFMKLDFNKTGTVSVIDIRKCYCAKKHPRVISGHSTEEEIKSSFLETLK
                     DACSKPDEVSYGEFEDYYEGLSVGIAGDEDFVNILCTPWGI"
     exon            637..686
                     /gene="Caps2"
                     /inference="alignment:Splign:2.1.0"
     exon            687..732
                     /gene="Caps2"
                     /inference="alignment:Splign:2.1.0"
     exon            733..849
                     /gene="Caps2"
                     /inference="alignment:Splign:2.1.0"
     exon            850..1008
                     /gene="Caps2"
                     /inference="alignment:Splign:2.1.0"
     exon            1009..1122
                     /gene="Caps2"
                     /inference="alignment:Splign:2.1.0"
     exon            1123..1190
                     /gene="Caps2"
                     /inference="alignment:Splign:2.1.0"
     exon            1191..1265
                     /gene="Caps2"
                     /inference="alignment:Splign:2.1.0"
     exon            1266..1361
                     /gene="Caps2"
                     /inference="alignment:Splign:2.1.0"
     exon            1362..1455
                     /gene="Caps2"
                     /inference="alignment:Splign:2.1.0"
     exon            1456..1574
                     /gene="Caps2"
                     /inference="alignment:Splign:2.1.0"
     exon            1575..1654
                     /gene="Caps2"
                     /inference="alignment:Splign:2.1.0"
     exon            1655..1809
                     /gene="Caps2"
                     /inference="alignment:Splign:2.1.0"
     exon            1810..1935
                     /gene="Caps2"
                     /inference="alignment:Splign:2.1.0"
     exon            1936..2032
                     /gene="Caps2"
                     /inference="alignment:Splign:2.1.0"
     exon            2033..3160
                     /gene="Caps2"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gtgtaggaag tagaggcagc ccggaagagt ggaagtatgg tagcacagct tggggtccag
       61 aggtggagtt gaagtccctt ttatttctgg ggaagttgga gagggtgagg aggcctagtg
      121 aaccggtgcc agttgcctag caaccggaga cgctgctcta gactcgtgtt ttctgggaac
      181 tgctcctgag tttgcctatg agaaagctct cagaaggaag ttcttggtgg aatcactttg
      241 gtttataccc ctttcagtcc ttctatttcc ggtttgggtt gaatggggct aacactctta
      301 ggtcaagtca gcttgccttg tttcctagtg tggccctgaa gaaggggata gtggattcct
      361 tttggagcgc tccagatact gtgaagctct ctactaagcc cggagacaaa aagtgaggag
      421 caccgggcgc catcactttt ataagcttac tgtgttaccg aagactaatt ggtgcaactt
      481 ggagctgcaa acaccctacc cagttgcttc cagaaagact aaaatatagc acgctgtaca
      541 agacatacag acatttgaat ggatttagag gtgaaagggg tggctgcagc taggagccaa
      601 actcagctat attctggaag aaagaattca ctgaaacaag gatggacttc cagatcatgg
      661 gcaattcaaa attcctgcct acctatggtc ccaccacttg atctgggaag ccttgttgac
      721 tctgatgagg aggataagtt ttcaccagca ccacgtggta ccgtccatga tgctccacgg
      781 tcacagccta ctctgagcta cattatgccg tgtcaaaggc catatattca acatcatcta
      841 aatgaagcgg aacaggacac aatacctgag gatttgccag caccaacagg caaatacaag
      901 ctaaaatacc agcagtatgc aagtgaaatg aaggacggct acaaacagta cattcagagg
      961 agtgcagaga agccaaagcc aggaaaaggg ccagaggcta acaagaaggt agaaggagcc
     1021 tgcctggatg acctcataac tttggatagg aaagccctat tacagcaagg ctatgcagac
     1081 agcccttacc atagacggag cagtgcaaag aaatcagatg tggagactgt ggctctagag
     1141 aagaagaggc agactgttgc agaacaaatg atggtagacc acttatccag gataagaacc
     1201 aactccacat taacagagaa tgacctttct cagaaagtag aattcgaagg gagggtctta
     1261 tcaagaaatg gacgcgatgc ctgcagggaa ctgattgggt ttttctttgc ccatgaccag
     1321 tccctaactg tgtatgagta tcgaatgttt gggaaaaaca gaacaagcgt gcttcctttt
     1381 attaaaaaag acgtttattg tcatcagtat ggacagagaa aaggagagca atatgagctt
     1441 ggtgacttct atactggtgc aactttgaca tttctgagct gtgatcatcc tagccttcca
     1501 aagagcataa aagaaaatgc attacttaga cttcgaatta caagtattga tcaagtagct
     1561 ttggattctc tgaaagctgc ctctgcggaa cccgggagag aagatccagt cagtcaggag
     1621 gcacaagacc agctggtgct gcaggccatt caagagaaac taaaagaaca actgcacacg
     1681 aaaggtgttc ggattttgac cggattggga aaatactttc aacgtttgga caaggaaggg
     1741 aatgggcttt tagaaaagac agattttcag caagctctgg aaaccttcca cttggaagtg
     1801 tctgagcagg actttgagtc ttcctggcta atcctgctag gccatggcca tagccagaac
     1861 aaggttgatt atggagaatt caaacgtgcc atttttggtg aaatgaatga atataggaaa
     1921 tcatttgttc gcaaggcctt catgaaattg gattttaaca aaaccggcac cgtgtctgtt
     1981 atagacataa gaaagtgtta ctgtgcaaag aagcacccac gtgtgatttc agggcattca
     2041 acagaggagg aaatcaaatc gtctttccta gagacattaa aagacgcctg cagcaagcct
     2101 gatgaagttt cgtacggtga atttgaagat tattatgaag gcctaagtgt agggatagca
     2161 ggcgatgaag actttgtcaa tatcttatgt actccatggg gaatttagtt ttcaataatg
     2221 cacattctca ccggcaccaa gcatttcata gttaatatgc actttacata aaatatgatc
     2281 agcttgtaat atattttcta agattctttt taactttctt taaaagtgaa gtctggaaag
     2341 gctaatgcag aactcaatat gtgtttttga gcacatatac atgcttatat gtctaaatgt
     2401 ttataaagac agttcttttt gctcattctt atcttatact tattatatat ctatttatta
     2461 cacttgtaat actgatgctt attgtatctc ttatcctacc agaataagat ggtccttatt
     2521 cttatatatt atactcctta cacttatttt agaaaagtag ttaaaattta gccttaatag
     2581 aaaagtaaca ttttcatcaa actctatgag ggcttatata gtgatccttt tttgtccttt
     2641 ctcaattttc ttataacctt tctctagaat acagttgcca ccattctcaa tttaatgatg
     2701 tgggattcag atcaaggctg tagtagttag tgcaacttgt ttgaaaggtg aaaatatcca
     2761 gatatttgta aaagcaatgt taaagtcagt atgattatgg gtgttttcta tgcattgtat
     2821 ttcaaatggt tggtgtttac tcctcaatgt ttatttaaag agaattggta tttatttttg
     2881 tcttcaaaat tatatactac tctttgttca cttggaaaaa ttacatttta ttttctattt
     2941 taaccgtcat attatctgta tacaaacatt acttaaaagt aaacaacaaa atgtaggaaa
     3001 ccttggagtg tataaatatc cccttagact attaaatgaa ttctgaaata attaaatgat
     3061 ttttatacaa aatttaaaag catactttgt atcacaaaat aaagacatgg tattctaagc
     3121 acctcttctt ggtataagaa accatcagaa cattttcttc
//
