LOCUS       NM_001012185            3313 bp    mRNA    linear   ROD 30-MAY-2018
DEFINITION  Rattus norvegicus cell cycle associated protein 1 (Caprin1), mRNA.
ACCESSION   NM_001012185 XM_342473
VERSION     NM_001012185.2
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 3313)
  AUTHORS   Baltz AG, Munschauer M, Schwanhausser B, Vasile A, Murakawa Y,
            Schueler M, Youngs N, Penfold-Brown D, Drew K, Milek M, Wyler E,
            Bonneau R, Selbach M, Dieterich C and Landthaler M.
  TITLE     The mRNA-bound proteome and its global occupancy profile on
            protein-coding transcripts
  JOURNAL   Mol. Cell 46 (5), 674-690 (2012)
   PUBMED   22681889
REFERENCE   2  (bases 1 to 3313)
  AUTHORS   Castello A, Fischer B, Eichelbaum K, Horos R, Beckmann BM, Strein
            C, Davey NE, Humphreys DT, Preiss T, Steinmetz LM, Krijgsveld J and
            Hentze MW.
  TITLE     Insights into RNA biology from an atlas of mammalian mRNA-binding
            proteins
  JOURNAL   Cell 149 (6), 1393-1406 (2012)
   PUBMED   22658674
REFERENCE   3  (bases 1 to 3313)
  AUTHORS   Kunde SA, Musante L, Grimme A, Fischer U, Muller E, Wanker EE and
            Kalscheuer VM.
  TITLE     The X-chromosome-linked intellectual disability protein PQBP1 is a
            component of neuronal RNA granules and regulates the appearance of
            stress granules
  JOURNAL   Hum. Mol. Genet. 20 (24), 4916-4931 (2011)
   PUBMED   21933836
REFERENCE   4  (bases 1 to 3313)
  AUTHORS   Shiina N and Tokunaga M.
  TITLE     RNA granule protein 140 (RNG140), a paralog of RNG105 localized to
            distinct RNA granules in neuronal dendrites in the adult vertebrate
            brain
  JOURNAL   J. Biol. Chem. 285 (31), 24260-24269 (2010)
   PUBMED   20516077
REFERENCE   5  (bases 1 to 3313)
  AUTHORS   Ghosh D, Lippert D, Krokhin O, Cortens JP and Wilkins JA.
  TITLE     Defining the membrane proteome of NK cells
  JOURNAL   J Mass Spectrom 45 (1), 1-25 (2010)
   PUBMED   19946888
REFERENCE   6  (bases 1 to 3313)
  AUTHORS   Shiina N, Shinkura K and Tokunaga M.
  TITLE     A novel RNA-binding protein in neuronal RNA granules: regulatory
            machinery for local translation
  JOURNAL   J. Neurosci. 25 (17), 4420-4434 (2005)
   PUBMED   15858068
  REMARK    GeneRIF: RNG105 is a translational repressor in the RNA granules
            and provide insight into the link between RNG105 dynamics and local
            translational regulation.
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from CB579393.1,
            BC110053.1, CR459061.1 and BC087123.1.
            
            [WARNING] On Jul 6, 2023 this sequence was replaced by
            NM_001012185.3.
            
            On Feb 14, 2006 this sequence version replaced NM_001012185.1.
            
            ##Evidence-Data-START##
            CDS exon combination :: AB373991.1 [ECO:0000331]
            RNAseq introns       :: mixed/partial sample support SAMD00052296,
                                    SAMD00052297 [ECO:0000350]
            ##Evidence-Data-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-25                CB579393.1         1-25
            26-2080             BC110053.1         22-2076
            2081-2144           CR459061.1         166-229             c
            2145-3313           BC087123.1         2015-3183
FEATURES             Location/Qualifiers
     source          1..3313
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="3"
                     /map="3q32"
     gene            1..3313
                     /gene="Caprin1"
                     /gene_synonym="GPI p137; Gpiap1; rng105"
                     /note="cell cycle associated protein 1"
                     /db_xref="GeneID:362173"
                     /db_xref="RGD:1305707"
     exon            1..85
                     /gene="Caprin1"
                     /gene_synonym="GPI p137; Gpiap1; rng105"
                     /inference="alignment:Splign:2.0.8"
     CDS             86..2209
                     /gene="Caprin1"
                     /gene_synonym="GPI p137; Gpiap1; rng105"
                     /note="RNA granule protein 105; GPI-p137; GPI-anchored
                     protein p137; cytoplasmic activation- and
                     proliferation-associated protein 1; p137GPI; GPI-anchored
                     membrane protein 1"
                     /codon_start=1
                     /product="caprin-1"
                     /protein_id="NP_001012185.2"
                     /db_xref="GeneID:362173"
                     /db_xref="RGD:1305707"
                     /translation="MPSATSHSGSGSKSSGPPPPSGSSGSEAAAGAAAPASQHPATGT
                     GAVQTEAMKQILGVIDKKLRNLEKKKGKLDDYQERMNKGERLNQDQLDAVSKYQEVTN
                     NLEFAKELQRSFMALSQDIQKTIKKTARREQLMREEAEQKRLKTVLELQYVLDKLGDD
                     DVRTDLKQGLSGVPILSEEELSLLDEFYKLVDPERDMSLRLNEQYEHASIHLWDLLEG
                     KEKPVCGTTYKALKEIVERVFQSNYFDSTHNHQNGLCEEEEAASAPIVEDQVAEAEPE
                     PTEEYTEQSEVESTEYVNRQFMAETQFSSGEKEQVDEWAVETVEVVNSLQQQPQAASP
                     SVPEPHSLTPVAQSDPLVRRQRVQDLMAQMQGPYNFIQDSMLDFENQTLDPAIVSAQP
                     MNPTQNMDMPQLVCPQVHSESRLAQSNQVPVQPEATQVPLVSSTSEGYTASQPLYQPS
                     HAAEQRPQKEPIDQIQATISLNTEQTTASSSLPAASQPQVFQAGASKPLHSSGINVNA
                     APFQSMQTVFNMNAPVPPVNEPETLKQQSQYQASYNQSFSSQPHQVEQTELQQDQLQT
                     VVGTYHGSQDQPHQVPGNHQQPPQQSTGFPRSSQPYYNSRGVSRGGSRGARGLMNGYR
                     GPANGFRGGYDGYRSSFSNTPNSGYTQSQFNAPRDYSGYQRDGYQQNFKRGSGQSGPR
                     GAPRGRGGPPRPNRGMPQMNTQQVN"
     exon            86..295
                     /gene="Caprin1"
                     /gene_synonym="GPI p137; Gpiap1; rng105"
                     /inference="alignment:Splign:2.0.8"
     exon            296..358
                     /gene="Caprin1"
                     /gene_synonym="GPI p137; Gpiap1; rng105"
                     /inference="alignment:Splign:2.0.8"
     exon            359..445
                     /gene="Caprin1"
                     /gene_synonym="GPI p137; Gpiap1; rng105"
                     /inference="alignment:Splign:2.0.8"
     exon            446..684
                     /gene="Caprin1"
                     /gene_synonym="GPI p137; Gpiap1; rng105"
                     /inference="alignment:Splign:2.0.8"
     exon            685..767
                     /gene="Caprin1"
                     /gene_synonym="GPI p137; Gpiap1; rng105"
                     /inference="alignment:Splign:2.0.8"
     exon            768..905
                     /gene="Caprin1"
                     /gene_synonym="GPI p137; Gpiap1; rng105"
                     /inference="alignment:Splign:2.0.8"
     exon            906..958
                     /gene="Caprin1"
                     /gene_synonym="GPI p137; Gpiap1; rng105"
                     /inference="alignment:Splign:2.0.8"
     exon            959..1045
                     /gene="Caprin1"
                     /gene_synonym="GPI p137; Gpiap1; rng105"
                     /inference="alignment:Splign:2.0.8"
     exon            1046..1201
                     /gene="Caprin1"
                     /gene_synonym="GPI p137; Gpiap1; rng105"
                     /inference="alignment:Splign:2.0.8"
     exon            1202..1310
                     /gene="Caprin1"
                     /gene_synonym="GPI p137; Gpiap1; rng105"
                     /inference="alignment:Splign:2.0.8"
     exon            1311..1372
                     /gene="Caprin1"
                     /gene_synonym="GPI p137; Gpiap1; rng105"
                     /inference="alignment:Splign:2.0.8"
     exon            1373..1483
                     /gene="Caprin1"
                     /gene_synonym="GPI p137; Gpiap1; rng105"
                     /inference="alignment:Splign:2.0.8"
     exon            1484..1633
                     /gene="Caprin1"
                     /gene_synonym="GPI p137; Gpiap1; rng105"
                     /inference="alignment:Splign:2.0.8"
     exon            1634..1784
                     /gene="Caprin1"
                     /gene_synonym="GPI p137; Gpiap1; rng105"
                     /inference="alignment:Splign:2.0.8"
     exon            1785..1979
                     /gene="Caprin1"
                     /gene_synonym="GPI p137; Gpiap1; rng105"
                     /inference="alignment:Splign:2.0.8"
     exon            1980..2080
                     /gene="Caprin1"
                     /gene_synonym="GPI p137; Gpiap1; rng105"
                     /inference="alignment:Splign:2.0.8"
     exon            2081..2144
                     /gene="Caprin1"
                     /gene_synonym="GPI p137; Gpiap1; rng105"
                     /inference="alignment:Splign:2.0.8"
     exon            2145..3288
                     /gene="Caprin1"
                     /gene_synonym="GPI p137; Gpiap1; rng105"
                     /inference="alignment:Splign:2.0.8"
ORIGIN      
        1 gcgcacgtct ctgttcgcaa cgcagcgcta cccttgcccc cctcggctgc ccactccaga
       61 cgtccaacgg ctcagcgcgc gcacgatgcc ctcggccacc agccacagcg gaagcggcag
      121 caaatcgtcg ggaccgccgc cgccgtccgg ttcctccggg agtgaggcgg cggccggggc
      181 agctgcgccg gcttctcagc atccggcaac cggcaccggc gcggtccaga ccgaggccat
      241 gaagcagatt ctcggcgtga tcgacaagaa acttcggaac cttgagaaga aaaagggtaa
      301 acttgatgat taccaggaac gaatgaataa aggggaaagg ctcaatcaag accagctgga
      361 tgccgtatct aagtaccagg aagtcacaaa taatttggag tttgcaaagg aattacagag
      421 aagtttcatg gcattaagtc aggatattca gaaaacaata aagaagacag cacgtcggga
      481 gcagcttatg agagaagaag cagaacagaa gcgcttaaaa actgtacttg agttacagta
      541 tgtattggat aagctgggag atgatgatgt gagaacggat ctgaagcagg ggctgagtgg
      601 agtgccaata ttgtctgaag aggagttgtc attgttggat gaattctaca agctagtaga
      661 tcccgagcgg gacatgagtt taaggttaaa tgagcagtat gaacatgcct ccattcactt
      721 gtgggatttg ctggaaggga aagaaaagcc tgtatgtgga acaacctata aagctctaaa
      781 ggaaattgtc gagcgtgttt ttcagtcaaa ctactttgac agcactcata atcatcaaaa
      841 tggattgtgt gaggaggaag aggcagcttc agcacctata gtggaagacc aggtagctga
      901 agctgaacct gaaccaacgg aagaatacac agagcaaagt gaggttgagt caacagagta
      961 tgtcaatagg cagttcatgg cggaaacaca gttcagcagt ggtgagaagg agcaagtgga
     1021 tgagtgggca gttgaaacag ttgaggtggt aaactcactc cagcagcaac ctcaggctgc
     1081 atctccttca gtaccagagc cccactctct gactccagtg gctcagtcag atccacttgt
     1141 gagaagacag cgagtacaag atcttatggc acaaatgcaa gggccctata atttcataca
     1201 ggattcaatg ttggattttg aaaatcagac gcttgatcct gccattgtat cagcacaacc
     1261 tatgaaccct acccaaaaca tggatatgcc tcagctggtt tgccctcagg ttcattctga
     1321 atctagactt gcccaatcta atcaagttcc tgtacaacca gaagccacac aggttccttt
     1381 ggtctcatcc acaagcgagg ggtacactgc gtctcagccc ctgtaccagc cgtctcatgc
     1441 tgcagagcag cggccacaaa aggagcccat tgatcagatt caggcaacaa tatctttaaa
     1501 tacagagcag actacagcat catcatccct tcctgctgct tctcagcctc aagtgttcca
     1561 ggctggggca agtaaacctt tgcatagcag tggaatcaat gtaaatgcag ctccattcca
     1621 atccatgcaa acggtgttta atatgaatgc cccagttcct cctgttaatg aaccagaaac
     1681 tttaaaacaa cagagtcagt accaggccag ttataaccag agcttttcca gtcagcctca
     1741 ccaagtggaa caaacagagc ttcaacaaga ccagctgcaa actgtggttg gcacttacca
     1801 tggatcccag gaccagcctc atcaagtgcc tggtaaccac cagcagcccc cccagcagag
     1861 caccggcttt ccacgtagca gtcagcctta ttacaacagt cgcggtgtat ctcgaggagg
     1921 gtctcgtggt gccagaggtt tgatgaatgg atacaggggc cctgccaatg gatttagagg
     1981 aggatatgat ggttaccgct cttcattctc caacactcca aacagtggct atacacagtc
     2041 tcagttcaat gctccccggg actactctgg ctaccagcgg gatggatatc agcagaattt
     2101 caagcgaggc tctgggcaga gtggaccacg gggagcccca cgaggtcgtg gagggccccc
     2161 aagacccaac agagggatgc cgcaaatgaa cactcagcaa gtgaattaat gtgatacaca
     2221 ggattatgtt taatcgccaa aaacacactg gccagtgtac cataatatgt taccagaaga
     2281 gttattatct atttgttctc cctttcagga aacttattgt aaagggactg ttttcatccc
     2341 ataaagacag gactgcaatt gtcagcttca tattacctgg aaatggaagg aactattctt
     2401 actctgcatg ttctgtccta agcgtcatct tgagccttgc acacgaaact cagattcctc
     2461 acccttgctt aggagtaaaa cattatatac ttatggggtg ataatatctc catagttagt
     2521 tgaagtggct tggaaaaaaa tgcaagattg acttttgaca ttggataaaa tttacaatca
     2581 gccctagaat tattcaatgg taattgacaa agtttaaagc attttccttg aaaggaagat
     2641 ggaaggagtg gagtgtggtt tagcaaaaca actgcatttc acagcttttc ccattaaatt
     2701 ggagcacgga cagattagaa gcataccaaa ttatgcatgg gttctaatca cacaagtgag
     2761 gctggcttac accagccctg acatagcact cactagtctt ctggccaaac gactgtgatt
     2821 gaaaacacat gtaaactgct ctttactagt ggatactgtg taagacaaag cccagatgca
     2881 aatcaggctt tgactgactc ttctggaaga tatgcatcaa atatggggta taatctggat
     2941 gggctgcctc tgtgctcaat gtgaattatt tagatatctt ttgaacactt taacagtttc
     3001 tctgaaacaa tgacttacat gaggattggt cctcacaata atgtgcattg tcatcactaa
     3061 ccctggatct tgctgtattg ttactcaaat tggtaatagg tactgatgaa gatcgctaat
     3121 ggatggataa tcataacact tttggccaca tggttttctg ctgctaccac ccttttgaaa
     3181 agcaccagta tgtgtttaag attcatttcc ctattttagg gaaatgacag acagtagttt
     3241 cagttctgat ggtataagca aaacaaataa aacatgtttc taaaagttaa aaaaaaaaaa
     3301 aaaaaaaaaa aaa
//
