LOCUS       NM_001106990            4815 bp    mRNA    linear   ROD 24-JUN-2024
DEFINITION  Rattus norvegicus calpain 15 (Capn15), mRNA.
ACCESSION   NM_001106990 XM_001062520 XM_239171
VERSION     NM_001106990.1
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 4815)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from CH473948.1.
            
            On or before Oct 4, 2007 this sequence version replaced
            XM_001062520.1, XM_239171.4.
            
            ##Evidence-Data-START##
            RNAseq introns :: mixed sample support SAMD00132261, SAMD00132262
                              [ECO:0006172]
            ##Evidence-Data-END##
FEATURES             Location/Qualifiers
     source          1..4815
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="10"
                     /map="10q12"
     gene            1..4815
                     /gene="Capn15"
                     /gene_synonym="Solh"
                     /note="calpain 15"
                     /db_xref="GeneID:303000"
                     /db_xref="RGD:1306514"
     exon            1..321
                     /gene="Capn15"
                     /gene_synonym="Solh"
                     /inference="alignment:Splign:2.1.0"
     exon            322..1798
                     /gene="Capn15"
                     /gene_synonym="Solh"
                     /inference="alignment:Splign:2.1.0"
     CDS             344..3439
                     /gene="Capn15"
                     /gene_synonym="Solh"
                     /note="small optic lobes homolog"
                     /codon_start=1
                     /product="calpain-15"
                     /protein_id="NP_001100460.1"
                     /db_xref="GeneID:303000"
                     /db_xref="RGD:1306514"
                     /translation="MATVGEWSCARCTFLNPAGQRQCSICEAPRHKPDLDQILRLSVE
                     EQKWPCARCTFRNFLGKEACEVCGFTPEPVPGAPLLPIINGVLPKPPTILVEPKGNSK
                     EETGPVRTAGLVATEPARGHPEKEEEEKEQEDDGERADPGSGWACQRCTLHNTPVASS
                     CSACGGPRKLSLPRIPPEALVVPEVVAPTGFHVVPPPSQPALPGEGAEAESPSTSQGP
                     TSTDQEPPRVPLFSPFSPTLQNNPVPRSRREVPPQLQPPVPEGAQSSASTSSKGPQQG
                     PGRAAAGASRLAELLSGKELLPGKRLSVLEEEAPESSPARCESCSDVIDLAGDVVRYT
                     PASPSSPDFTTWSCARCTLRNPTTASRCSVCGGSKLHGFQEHSEPPTHCPDCGADKPG
                     PCVGSCGRAPSAHKAARLLPDRPGQWACPACTLINTPRAKHCAACHTPQLLVTQCRGA
                     TPLRRRESMHVEKRRQTDEGEAKALWENIVAFCRENSVNFVDDSFPPGPASVGFPVGD
                     SVQQRVKQWLRPHEINCSVFRDHGTPWSVFHTLRPSDILQGLLGNCWFLSALAVLAER
                     PDLVERVMVTRSLCAEGAYQVRLCKDGTWTTVLVDDMLPCDEAGFLLFSQAQRKQLWV
                     ALIEKALAKLHGSYFALQAGRAIEGLATLTGAPCESLALQVSSTNPREEPVDTDLIWA
                     KMLSSKEAGFLMGASCGGGNMKVDDAAYESLGLRPRHAYSVLDVRDVQGSRLLRLRNP
                     WGRFSWNGSWSDEWPHWPGHLRAELMPHGSSEGVFWMEYSDFIRYFDSVDICKVHSDW
                     QEARVQGCFPSTASGPVGVTALTVLERASLEFALFQEGSRRSDSVDSHLLDLCILVFR
                     ATFGTGGRLSLGRLLAHSKRAVKKFVNCDVMLEPGEYAVVCCAFNHWNPAPPGPPAQA
                     SSPSAGVPRGAPEPPGHVLAVYSSRLVMVEPVEAQPTTLADAIILLTESRGERHEGRE
                     GMTCYYLTHGWAGLIVVVENRHPKSYLHVQCDCTDSFNVVSTRGSLRTQDSVPPLHRS
                     W"
     exon            1799..2007
                     /gene="Capn15"
                     /gene_synonym="Solh"
                     /inference="alignment:Splign:2.1.0"
     exon            2008..2191
                     /gene="Capn15"
                     /gene_synonym="Solh"
                     /inference="alignment:Splign:2.1.0"
     exon            2192..2415
                     /gene="Capn15"
                     /gene_synonym="Solh"
                     /inference="alignment:Splign:2.1.0"
     exon            2416..2541
                     /gene="Capn15"
                     /gene_synonym="Solh"
                     /inference="alignment:Splign:2.1.0"
     exon            2542..2694
                     /gene="Capn15"
                     /gene_synonym="Solh"
                     /inference="alignment:Splign:2.1.0"
     exon            2695..2856
                     /gene="Capn15"
                     /gene_synonym="Solh"
                     /inference="alignment:Splign:2.1.0"
     exon            2857..3083
                     /gene="Capn15"
                     /gene_synonym="Solh"
                     /inference="alignment:Splign:2.1.0"
     exon            3084..3250
                     /gene="Capn15"
                     /gene_synonym="Solh"
                     /inference="alignment:Splign:2.1.0"
     exon            3251..3429
                     /gene="Capn15"
                     /gene_synonym="Solh"
                     /inference="alignment:Splign:2.1.0"
     exon            3430..4815
                     /gene="Capn15"
                     /gene_synonym="Solh"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gcgcgattcc cagtgccgcg tgcgcccctg acgcgccgta gccttcggcc ccggctgggc
       61 tccacgctac ggaggcggcg taagacatac cgggtgggcc gggcgggacg gcgggcgcta
      121 cggaggcggc gtaaggttgc cgggccgaaa cggatctaca cagccaaaac gcgctaagcc
      181 ggcggagcat ctcggctggc gcgaaggggg ccttggtgcc ctacggtaga agttgtgggt
      241 caaccgactg agggctggca ctagggccgc gcccgcctag acctaccgcg agcgctgagg
      301 aggcgccgcc ggctcgctaa gccacactca ttctcctggg tctatggcca cagttgggga
      361 gtggtcctgt gcgcgctgca ccttcctgaa tcctgccggc caacgccagt gctccatctg
      421 tgaggccccc cgacataagc cagatcttga ccagatcctg cgtctcagcg tagaggagca
      481 gaaatggccc tgtgcacgct gtacattccg gaacttttta ggcaaagagg cttgtgaagt
      541 atgtggcttt accccagagc ctgttccggg agcccctctg ctgcccatta tcaatggggt
      601 cctgcccaag ccacccacca tactggtgga gccaaagggc aacagcaagg aggaaacagg
      661 cccagtacgg acagcagggc tagtggccac agagccagcc agagggcacc ctgaaaaaga
      721 agaggaggaa aaggagcagg aggacgacgg ggaaagggca gatcctggca gtggctgggc
      781 atgccagcgc tgcacactgc ataacacacc agtggccagc tcttgttctg cctgtggggg
      841 gccccggaaa ctgtcattgc ctcgcatccc cccagaggcc ctggtggtcc ccgaggttgt
      901 agcccctact ggctttcatg ttgttcctcc tccatcccag cctgcccttc ctggggaagg
      961 tgctgaggcc gagtctcctt ctaccagcca gggtcccacc tccactgacc aggagccacc
     1021 tagggtacca ctcttcagcc ccttctcacc caccctgcag aataaccctg tacccagaag
     1081 ccgccgggag gtgccccctc agcttcagcc acctgtgcct gagggtgctc agtcctcagc
     1141 ctccacaagc tccaaagggc cccagcaggg ccctggaaga gctgcagctg gagcctcccg
     1201 cctagctgag ctgctctcag gcaaagagct gctgccaggc aagcgactga gtgtattgga
     1261 ggaggaagcc ccagagagca gccctgcccg ctgcgagtca tgcagtgatg tcattgacct
     1321 ggctggagac gttgtgcgct acacacctgc cagcccctcc agccctgact tcaccacctg
     1381 gtcatgtgcc aggtgtacac ttaggaaccc cacaacagcc tccaggtgtt cagtgtgtgg
     1441 tggctccaag ctgcatggtt tccaggagca cagtgaaccc cctacccact gccccgactg
     1501 tggtgccgac aagcctggcc cctgtgttgg ctcctgtgga cgagctcctt cagcacacaa
     1561 ggctgctcgt ctcttgcctg atcgcccggg ccagtgggcc tgccctgcct gtactctgat
     1621 caacacacct cgggccaagc actgtgcagc ctgccataca ccacagcttc tggtgaccca
     1681 gtgccggggg gctacccccc tgaggcggag ggaaagtatg catgtggaga agcggaggca
     1741 gacagatgag ggcgaggcca aagcactctg ggagaacata gtggcttttt gcagagagaa
     1801 tagtgtgaac tttgtggatg acagcttccc ccccgggcct gcatctgtcg gcttcccagt
     1861 gggcgacagc gtccagcagc gagtgaaaca gtggctgcgg ccccacgaaa tcaactgctc
     1921 tgtcttcagg gaccacggca ctccgtggtc ggtcttccac actctgaggc cctctgacat
     1981 cctacagggg ctgctgggga actgctggtt cctgagtgca ttggcagtgc tggctgagcg
     2041 tcccgacctt gtggagaggg tgatggtgac acgtagcctg tgtgcagagg gtgcctacca
     2101 ggtgcggctg tgcaaagacg gcacatggac gacagtgctg gtggacgaca tgctgccctg
     2161 tgacgaggct gggttcctgc tcttctcaca ggcacagcgg aagcagttgt gggtggccct
     2221 cattgagaag gcactggcca agctgcacgg ctcctacttt gccctccagg cagggcgtgc
     2281 cattgaaggt ctggccacac tgaccggagc cccctgtgag agcctggcgc tgcaggtcag
     2341 ctccactaac ccccgagagg aacctgttga cactgatctc atctgggcca aaatgctgag
     2401 ttctaaggag gctgggttcc tcatgggtgc ctcctgtggg ggcggtaaca tgaaggtaga
     2461 tgatgctgct tacgagagcc tgggtttgcg cccccgccat gcttactccg tcttggatgt
     2521 ccgtgatgtt cagggctcca ggctcctgcg actccggaac ccatggggcc gtttctcctg
     2581 gaatggcagc tggtcggatg agtggcctca ctggccaggg cacctgcgag ctgagctcat
     2641 gccccatggc agcagtgagg gtgtcttctg gatggagtat agtgacttta tcaggtactt
     2701 cgactctgtg gacatctgca aggtacactc agattggcaa gaggctcggg tgcagggctg
     2761 cttcccgagc actgccagcg ggcctgtggg tgtgacagca ctcacagtgc tggagcgtgc
     2821 ctcactggag tttgccctct tccaggaggg cagcaggcgc tcggattcag tagacagcca
     2881 cctcctggat ctgtgcatcc tagtgttccg ggccactttt ggcactggtg gccgcctgag
     2941 cctgggccgc ctcttggccc acagcaaacg tgctgttaag aagtttgtga actgtgatgt
     3001 catgctggag cctggggagt atgctgtggt gtgctgtgcc ttcaaccact ggaaccctgc
     3061 tccaccaggg ccccctgccc aggcctccag cccctcagca ggggtccccc gaggtgcccc
     3121 cgagccaccc ggccacgtac tcgcagtgta cagctccagg ctggtcatgg tggagccggt
     3181 ggaggcgcag ccaaccacac tggccgatgc catcatcctg ctcactgaga gccggggcga
     3241 gcggcatgag ggtcgagagg gcatgacctg ctattacctg actcatggct gggcggggct
     3301 catcgtggta gtggagaacc ggcaccccaa gtcctacctg catgtgcaat gtgactgcac
     3361 cgacagcttc aatgtggtgt ccacacgtgg cagcctgcgc acccaggaca gtgtaccacc
     3421 cctgcacagg tcctggtgat cttgtcccag ctggaaggca atgctggctt ctctatcacc
     3481 catcgcctgg cacatcgcaa ggcagcccag gccttcctca gtgactggac agcctctagg
     3541 ggtacccaca gccccccact cactcctgat gtggccggcc tacatggacc ccggccactg
     3601 tgactgcagt tccctagggc aagggctgtg tgcagaacta cccacctgcc cccctacatg
     3661 cactttatga gggagacccc caatggagga tgcttgaacc agaatctcag gaccctgccc
     3721 agggagccgc cagccacagg gtgcagcctc ccttgggcct ccctcccctc ctgtcccacc
     3781 ccaagtaccg tcagtccccc accaggcctc ccagctgcca tgcagaatac ctcgaaccag
     3841 gtgggcttca ttccagtact tctgtcttga gccctgggga cagcttcaag tggccatgcc
     3901 caagccaggc tgcccttccc tgtgaatgtg gggtcactta ctgtagagag gcagcccaga
     3961 tgtatgttca cagaaccaat tgggggttca gaggccatga cctgccttga gaacttgggc
     4021 aaccctttgt gggggctcag acctgctgct tctccccttg gtttgttccc aagcccagct
     4081 ccctgcccta tgaccagggt cctgatagcc ctggcatatg agcagcacac tgcaggaagc
     4141 agatgcctgg tggccgtcag ccagggcttg gggacagcta cacctcctgc aacactatgc
     4201 aattcctgga gcacctgcca ggatcgaagc catgatgggg ccgcaggtca ggagccaggc
     4261 ccagccctgc tgtctggaga agctctttgt ccttagcttc cctggccaca gtcagccctg
     4321 tcccatggcc tcagtctgtc cacaaagagg gataccccag tcccatcaca ggcacatgta
     4381 aggtgtgact gactactccc tcccctagaa gagggagcca agctgcccac ctgcccagca
     4441 ttcccccagc tgcttgtcaa gatcagagcc cttatctgcc acatggacgc ctgagtcact
     4501 tcctgggccc cccccccaca cacacctggc tgccactgtc ctgcggcccc ctaggtagtg
     4561 ggcagctccc atgcccactg tccttgcctc catggggctt gcgagggttt ttatacctag
     4621 agaaacattc ccctcccctc tgggcctcct tttactctga gctgtgaata tttttaaccc
     4681 tgtaaatagg accagctctt cgaacacaga gactatttta tcagctatca gtcccttcct
     4741 tgttcgatga tgcaccccac aggccatttc cactcaggct ccaaggacca aataaaagtg
     4801 ttttgttttg taagg
//
