LOCUS       NM_001025133            2659 bp    mRNA    linear   ROD 02-JUN-2024
DEFINITION  Rattus norvegicus calpain 13 (Capn13), mRNA.
ACCESSION   NM_001025133 XM_343019
VERSION     NM_001025133.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2659)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from BC091250.1.
            
            On Jul 1, 2005 this sequence version replaced XM_343019.2.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC091250.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMD00132272,
                                           SAMD00132293 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..2659
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="6"
                     /map="6q14"
     gene            1..2659
                     /gene="Capn13"
                     /gene_synonym="CANP 13"
                     /note="calpain 13"
                     /db_xref="GeneID:362701"
                     /db_xref="RGD:1562682"
     exon            1..48
                     /gene="Capn13"
                     /gene_synonym="CANP 13"
                     /inference="alignment:Splign:2.1.0"
     exon            49..282
                     /gene="Capn13"
                     /gene_synonym="CANP 13"
                     /inference="alignment:Splign:2.1.0"
     CDS             85..2091
                     /gene="Capn13"
                     /gene_synonym="CANP 13"
                     /note="calcium-activated neutral proteinase 13"
                     /codon_start=1
                     /product="calpain-13"
                     /protein_id="NP_001020304.1"
                     /db_xref="GeneID:362701"
                     /db_xref="RGD:1562682"
                     /translation="MAHDTEALEETSVVKFKNQDFRFLRDRCLSRGQLFIDDTFPAEA
                     SSIGQKLLMGKRLPKLEWKRPQDLSFGPPHFILEGASRFDIQQGRAGDCWFLAALGSL
                     TQNPQCLQKILMNQSFSYQYAGIFHFRFWQCGQWVEVVIDDRLPVVGNNFCFVHPRRG
                     NQEFWPCLMEKAYAKLLGSYSQLHYGYLPDALVDLTGGVVTRINLHSSPSDLLMVVKT
                     AVQTGSMVACATPKWLTEESEVMENGLVSQHAYTVTGAEKIQYRRGWEEIIRLWNPWG
                     NTEWRGRWGDGSQEWWETHGSRKSQLYENKDDGEFWMSCRDFHENFSCLYICSQFPIT
                     MDPGVTPNESWRQMRFKNQVISGNTAGGDGRDIQYLFDVQEPMDGNNVIVAFTVMPQS
                     LKTEEWPFPLQFQVFKVDSQFQKFQKRLPPAFFSQFRDAAQGIDYVTKRNFTKSFHLS
                     PGTYVVVASAHGKEVEFLLRIFLKMPHKDRNPNSSFNLKALKGSLSENESPKSSFHRY
                     MDQGLDIDASQLQSLLNQEYLTGPPGDTFSLDQCQSIMALMDLKVNGRLDREEFARLQ
                     SRLIHCQHVFQHIQRSQGVLRSSDLWEVIESTDFLSGVLLSKELLSLMTLRYSDSSGR
                     LSFPSLVCFLIRLETMSKAFRNLSKDGKSIYLTEMEWMKLVMYS"
     exon            283..355
                     /gene="Capn13"
                     /gene_synonym="CANP 13"
                     /inference="alignment:Splign:2.1.0"
     exon            356..471
                     /gene="Capn13"
                     /gene_synonym="CANP 13"
                     /inference="alignment:Splign:2.1.0"
     exon            472..608
                     /gene="Capn13"
                     /gene_synonym="CANP 13"
                     /inference="alignment:Splign:2.1.0"
     exon            609..783
                     /gene="Capn13"
                     /gene_synonym="CANP 13"
                     /inference="alignment:Splign:2.1.0"
     exon            784..858
                     /gene="Capn13"
                     /gene_synonym="CANP 13"
                     /inference="alignment:Splign:2.1.0"
     exon            859..944
                     /gene="Capn13"
                     /gene_synonym="CANP 13"
                     /inference="alignment:Splign:2.1.0"
     exon            945..1019
                     /gene="Capn13"
                     /gene_synonym="CANP 13"
                     /inference="alignment:Splign:2.1.0"
     exon            1020..1165
                     /gene="Capn13"
                     /gene_synonym="CANP 13"
                     /inference="alignment:Splign:2.1.0"
     exon            1166..1308
                     /gene="Capn13"
                     /gene_synonym="CANP 13"
                     /inference="alignment:Splign:2.1.0"
     exon            1309..1320
                     /gene="Capn13"
                     /gene_synonym="CANP 13"
                     /inference="alignment:Splign:2.1.0"
     exon            1321..1523
                     /gene="Capn13"
                     /gene_synonym="CANP 13"
                     /inference="alignment:Splign:2.1.0"
     exon            1524..1560
                     /gene="Capn13"
                     /gene_synonym="CANP 13"
                     /inference="alignment:Splign:2.1.0"
     exon            1561..1617
                     /gene="Capn13"
                     /gene_synonym="CANP 13"
                     /inference="alignment:Splign:2.1.0"
     exon            1618..1675
                     /gene="Capn13"
                     /gene_synonym="CANP 13"
                     /inference="alignment:Splign:2.1.0"
     exon            1676..1734
                     /gene="Capn13"
                     /gene_synonym="CANP 13"
                     /inference="alignment:Splign:2.1.0"
     exon            1735..1803
                     /gene="Capn13"
                     /gene_synonym="CANP 13"
                     /inference="alignment:Splign:2.1.0"
     exon            1804..1879
                     /gene="Capn13"
                     /gene_synonym="CANP 13"
                     /inference="alignment:Splign:2.1.0"
     exon            1880..2008
                     /gene="Capn13"
                     /gene_synonym="CANP 13"
                     /inference="alignment:Splign:2.1.0"
     exon            2009..2064
                     /gene="Capn13"
                     /gene_synonym="CANP 13"
                     /inference="alignment:Splign:2.1.0"
     exon            2065..2123
                     /gene="Capn13"
                     /gene_synonym="CANP 13"
                     /inference="alignment:Splign:2.1.0"
     exon            2124..2587
                     /gene="Capn13"
                     /gene_synonym="CANP 13"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gcttcctgca gggacactgc cccagggtgc taccttcaga ggacacagaa agaaaggact
       61 tcagacattt ttctagagct agtcatggca catgacacag aggctctaga agaaacctcc
      121 gtggtcaagt tcaagaacca ggactttaga ttcttacggg atcgttgcct gagcaggggt
      181 cagctgttta tagatgatac attccctgct gaggcatctt ccattggcca gaaactgctc
      241 atgggaaagc gccttccaaa attggagtgg aagcgaccac aggatttatc cttcggcccc
      301 cctcacttca ttctggaagg tgcaagcaga tttgacatcc aacaaggaag agcgggagac
      361 tgctggttcc tggcagcact gggttctctg acccagaacc cgcagtgtct gcagaagatc
      421 ctgatgaacc aaagcttttc gtaccagtac gctgggattt tccacttccg gttctggcag
      481 tgtggtcagt gggtggaagt agtcatcgat gaccgcttgc ctgtcgtagg caacaacttc
      541 tgctttgtgc atcctcgcag aggcaaccaa gaattctggc cctgcctgat ggagaaagcc
      601 tatgccaagc tgctaggctc atattcccaa ttacactatg gctaccttcc tgatgcgctg
      661 gtggacctca caggaggagt ggtcaccagg atcaacctgc actcctctcc ctctgaccta
      721 ttgatggtag tgaagaccgc agtccagaca ggctcaatgg tggcctgtgc caccccaaag
      781 tggctgacag aagagtccga ggttatggag aatgggctgg tgagccagca tgcatacaca
      841 gtgactggag ctgagaagat tcagtaccgg aggggctggg aagaaatcat ccgcctttgg
      901 aacccctggg gcaacacaga atggagaggc cgctggggag atgggtccca ggagtggtgg
      961 gaaacccatg gctcacggaa aagccagctg tacgagaata aggatgacgg cgagttttgg
     1021 atgtcctgtc gagatttcca tgagaacttc tcgtgcctgt acatatgtag ccagttcccg
     1081 atcactatgg atcctggagt cacacccaat gagagctggc gacaaatgag gtttaagaac
     1141 caagtgatct caggaaacac agcaggagga gatggaaggg atatacagta cctctttgac
     1201 gttcaagagc ccatggatgg taacaatgtc attgtggctt tcacagtcat gccacaaagc
     1261 ctgaagacag aagagtggcc atttccacta cagttccagg tgttcaaggt ggattcccag
     1321 ttccagaagt tccagaaaag actgccacct gcatttttct cccaattcag agatgctgcc
     1381 cagggaatag actatgtaac caaacgcaac ttcacaaagt ccttccacct gagtcctggg
     1441 acctatgtag tggttgcctc agcacacggg aaagaagtgg agttcctgct ccgaatattc
     1501 ctcaaaatgc cacacaagga caggaatcca aacagcagtt tcaacctcaa agccctcaag
     1561 ggaagtcttt cagaaaacga atccccaaaa agcagtttcc acagatatat ggatcagggg
     1621 ctagacattg atgccagcca acttcagagc cttctcaacc aggagtacct aacagggccc
     1681 ccaggggaca ctttctcctt ggaccagtgc caaagcatca tggcactgat ggatctgaaa
     1741 gtgaatgggc ggctggatcg ggaggagttt gcaagactac agagtcgcct gatccactgc
     1801 cagcatgttt tccagcacat ccagaggagc caaggagttc tccgcagctc ggacttatgg
     1861 gaggtcatag agagtacaga cttcctttca ggagtcctcc tcagcaagga gctgctgagt
     1921 cttatgacac tcaggtacag tgatagctct ggccggctca gctttcccag tcttgtctgc
     1981 ttcctgatac ggctggaaac catgtcaaag gcattccgca acctctccaa ggatggcaaa
     2041 agcatctacc tgacagaaat ggagtggatg aagctggtca tgtacagcta aagtgtgaaa
     2101 tgcagcagag ccctctggac caggacaagc tcctggtggt cacccgagga aacggctttc
     2161 tccgtggagt tgtaccaacc caatggcagg tctgcagcta aacctggtat ttgaaatgga
     2221 gtcaaaggcg cctgtgaaga gcctgagtgg aggtcttagc tgaggcaggc cctgggaaac
     2281 ccaaggtcat aggtcaccag agcactttct gacgtcagta ggcacttgca ggaaaacaaa
     2341 acaggaagtg tccactccca ctcccgagag gaagcaggaa gaaactggca ttccatcccc
     2401 tctcacacga tcaatcactg gatccattta ttgtggaaaa aaaaaaaaca gtctgatcca
     2461 gtttatgcac ccccgggatt ggtctaatca gtgtcatttg ccaaaaatcc acatgctttt
     2521 gtatctgcac ccaagttgtt tcacagctaa atggcaaaat aaaatttatt tctacaaaaa
     2581 aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa
     2641 aaaaaaaaaa aaaaaaaaa
//
