LOCUS       NM_001110808            2932 bp    mRNA    linear   ROD 29-MAR-2024
DEFINITION  Rattus norvegicus calpain 12 (Capn12), mRNA.
ACCESSION   NM_001110808 XM_001078527 XM_218460
VERSION     NM_001110808.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2932)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
COMMENT     INFERRED REFSEQ: This record is predicted by genome sequence
            analysis and is not yet supported by experimental evidence. The
            reference sequence was derived from JAXUCZ010000001.1.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            RNAseq introns :: single sample supports all introns SAMN06680413,
                              SAMN06680414 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-341               JAXUCZ010000001.1  93298571-93298911
            342-411             JAXUCZ010000001.1  93299371-93299440
            412-530             JAXUCZ010000001.1  93299585-93299703
            531-664             JAXUCZ010000001.1  93299924-93300057
            665-833             JAXUCZ010000001.1  93302527-93302695
            834-908             JAXUCZ010000001.1  93303148-93303222
            909-994             JAXUCZ010000001.1  93303298-93303383
            995-1069            JAXUCZ010000001.1  93303463-93303537
            1070-1233           JAXUCZ010000001.1  93304513-93304676
            1234-1466           JAXUCZ010000001.1  93304760-93304992
            1467-1478           JAXUCZ010000001.1  93305344-93305355
            1479-1687           JAXUCZ010000001.1  93305538-93305746
            1688-1730           JAXUCZ010000001.1  93305999-93306041
            1731-1790           JAXUCZ010000001.1  93306121-93306180
            1791-1848           JAXUCZ010000001.1  93306754-93306811
            1849-1919           JAXUCZ010000001.1  93307127-93307197
            1920-1982           JAXUCZ010000001.1  93307295-93307357
            1983-2061           JAXUCZ010000001.1  93307845-93307923
            2062-2178           JAXUCZ010000001.1  93309593-93309709
            2179-2237           JAXUCZ010000001.1  93309795-93309853
            2238-2932           JAXUCZ010000001.1  93309936-93310630
FEATURES             Location/Qualifiers
     source          1..2932
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /map="1q21"
     gene            1..2932
                     /gene="Capn12"
                     /note="calpain 12"
                     /db_xref="GeneID:308476"
                     /db_xref="RGD:1307341"
     exon            1..341
                     /gene="Capn12"
                     /inference="alignment:Splign:2.1.0"
     CDS             105..2264
                     /gene="Capn12"
                     /codon_start=1
                     /product="calpain-12"
                     /protein_id="NP_001104278.1"
                     /db_xref="GeneID:308476"
                     /db_xref="RGD:1307341"
                     /translation="MASGNRKVTIQLVDDGAAAGAGGPQLFKGQNYEAIRAACLDSGI
                     LFRDPCFPAGPDALGYDKLGPDSEKAKGVEWKRPHEFCAEPQFICEDMSRTDVCQGSL
                     GNCWLLAAAASLTLYPRLLYRVVPPGQGFQDGYAGVFHFQLWQFGRWVDVVVDDKLPV
                     RDGKLLFVRSEQRNEFWAPLLEKAYAKLHGSYEVMRGGHMNEAFVDFTGGVGEVLYLR
                     QNTPGVFAALRHALAKESLVGATALSDRGEIRTDEGLVKGHAYSVTGTHKMSLGFTKV
                     RLLRLRNPWGRVEWSGPWSDSCPRWDMLPSEWRDALLVKKEDGEFWMELQDFLTHFNT
                     VQICSLSPEVLGPSPAGGGWHIHTFQGRWVRGFNSGGSQPSAENFWTNPQFRLTLLEP
                     DEEEDEDDEEGPWGGWGAAGARPARGGRVPKCTVLLSLIQRNRRCLRAKGLTYLTVGF
                     HVFQIPEELLGLWDSPRSRALLPGLLRADRSVFCARRDVSRRCRLPPGHYLVVPSASR
                     VGDEADFTLRIFSERSHTAVEIDDVISADLDALQAPYKPLELELAQLFLELAGEEEEL
                     NALQLQTLISIALEPARNNTRTSGEIGLRTCEQLVQCFGRGQRLALYHFQELWGHLLS
                     WQATFDKFDEDASGTMNSCELRLALTAAGFHLNNQLTQALTSRYRNSRLRVDFEHFVC
                     CAARLTCIFRHCCQHLDGGEGVVCLTHKQWSEVATFS"
     exon            342..411
                     /gene="Capn12"
                     /inference="alignment:Splign:2.1.0"
     exon            412..530
                     /gene="Capn12"
                     /inference="alignment:Splign:2.1.0"
     exon            531..664
                     /gene="Capn12"
                     /inference="alignment:Splign:2.1.0"
     exon            665..833
                     /gene="Capn12"
                     /inference="alignment:Splign:2.1.0"
     exon            834..908
                     /gene="Capn12"
                     /inference="alignment:Splign:2.1.0"
     exon            909..994
                     /gene="Capn12"
                     /inference="alignment:Splign:2.1.0"
     exon            995..1069
                     /gene="Capn12"
                     /inference="alignment:Splign:2.1.0"
     exon            1070..1233
                     /gene="Capn12"
                     /inference="alignment:Splign:2.1.0"
     exon            1234..1466
                     /gene="Capn12"
                     /inference="alignment:Splign:2.1.0"
     exon            1467..1478
                     /gene="Capn12"
                     /inference="alignment:Splign:2.1.0"
     exon            1479..1687
                     /gene="Capn12"
                     /inference="alignment:Splign:2.1.0"
     exon            1688..1730
                     /gene="Capn12"
                     /inference="alignment:Splign:2.1.0"
     exon            1731..1790
                     /gene="Capn12"
                     /inference="alignment:Splign:2.1.0"
     exon            1791..1848
                     /gene="Capn12"
                     /inference="alignment:Splign:2.1.0"
     exon            1849..1919
                     /gene="Capn12"
                     /inference="alignment:Splign:2.1.0"
     exon            1920..1982
                     /gene="Capn12"
                     /inference="alignment:Splign:2.1.0"
     exon            1983..2061
                     /gene="Capn12"
                     /inference="alignment:Splign:2.1.0"
     exon            2062..2178
                     /gene="Capn12"
                     /inference="alignment:Splign:2.1.0"
     exon            2179..2237
                     /gene="Capn12"
                     /inference="alignment:Splign:2.1.0"
     exon            2238..2932
                     /gene="Capn12"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 ccatgcttaa agacccccaa cagggtacaa atggaacaga agccccgcct catgactcag
       61 gaggttaaag ggcttgggtc cttctgtgtg cccagagtgt ccggatggcg agtggcaaca
      121 ggaaggtcac tatccagctg gtggacgacg gggccgcggc tggagctggg ggcccacagc
      181 tctttaaggg tcagaactac gaagccatcc gagcagcttg cctggattcc gggatcctgt
      241 ttcgtgaccc ttgcttccct gctggccctg atgcccttgg ctatgacaag ctgggacctg
      301 actcagagaa ggccaaaggg gtggaatgga agaggcctca tgagttttgt gccgagcccc
      361 agttcatctg tgaagacatg agtagaacag atgtgtgcca gggcagcttg ggaaactgct
      421 ggcttctagc agcggctgcc tctctcacgc tgtaccccag actcctgtac cgggtggtcc
      481 cccctgggca aggcttccaa gatggctatg ctggggtttt ccactttcag ctctggcagt
      541 ttggccgatg ggtggatgtg gtggtggacg acaaactgcc tgtgcgtgac gggaagctgc
      601 tctttgtgcg ctcagaacaa aggaacgagt tctgggcccc tctactggaa aaggcctatg
      661 ccaagctcca cggctcctat gaggtaatgc gaggaggtca catgaacgag gcatttgtgg
      721 actttacggg aggcgtgggc gaggtcctct acttgagaca gaacacccca ggtgtctttg
      781 ccgcccttcg ccatgccctg gccaaggagt cccttgtggg tgccactgcc ctgagtgatc
      841 ggggtgagat ccgcacagat gaagggcttg tgaaaggaca tgcttattct gtcacaggca
      901 cacacaagat gtctctgggc ttcaccaagg tgcggctgct gcggctgagg aacccctggg
      961 gccgcgtgga gtggtccggg ccctggagcg acagctgccc acgctgggac atgctcccct
     1021 ctgagtggag agatgccctg cttgtgaaaa aggaggatgg cgagttctgg atggagcttc
     1081 aggacttcct cacgcacttc aacacggtcc agatttgttc actgagccct gaggtgttgg
     1141 gccccagccc ggctggtggc ggctggcaca ttcacacctt ccagggccgc tgggtgcgcg
     1201 gcttcaactc cggtgggagt cagcccagcg ctgaaaactt ctggaccaat ccccagttcc
     1261 ggctgacact gctggagccg gatgaggaag aggatgaaga tgatgaagag ggaccctggg
     1321 gaggctgggg agctgcaggg gcacggccag cgagaggagg ccgagtcccc aagtgcacgg
     1381 tcctactgtc actcatccaa cgcaaccgcc ggtgtctgag ggccaagggc ctcacttacc
     1441 tcactgtggg cttccacgtg ttccagatcc cggaggagct gctgggcctc tgggactctc
     1501 cgcgcagccg cgcgctctta ccgggactgc tgcgcgccga ccgctcggtt ttctgtgccc
     1561 gccgcgacgt gagccgacgc tgccgcctgc cgcccggcca ctacctggtg gtgcccagcg
     1621 cctcgcgcgt gggcgatgaa gccgacttca cgctgcgcat cttctcggag cgcagccaca
     1681 ccgcagtgga gatcgatgac gtgatcagcg cggacctgga cgccctccag gccccctaca
     1741 agcctctgga gctggagttg gcacagctat ttttggagct ggctggagag gaggaggagc
     1801 tcaatgctct ccagctgcag accttaataa gcattgctct ggagcctgct aggaacaaca
     1861 ccaggacctc tggagagatt ggccttagga cctgcgaaca gcttgtgcag tgttttgggc
     1921 gtgggcaaag attggcccta taccacttcc aggaactctg gggccatctc ctgtcatggc
     1981 aggccacatt tgacaagttc gatgaagatg cttctgggac aatgaactcc tgtgaactga
     2041 ggctggcact gactgccgca ggcttccacc tgaacaacca gctgacccag gctctcacta
     2101 gccgctaccg aaacagccgg ctccgcgtgg acttcgagca ctttgtgtgt tgtgcagccc
     2161 ggctcacctg catcttccgc cactgctgcc aacacctgga tggcggcgag ggggtcgtct
     2221 gcctgaccca caaacagtgg tcggaggtgg ccaccttctc ataggcttga agctgaggga
     2281 gtctgccctg ctgccctgct gccctgcttg gtgccagtga tggaagatga acatggatga
     2341 gctcggcttg ggcccaactt gctgtcacac aggtggaggc tatggtgtct gtcttctggc
     2401 tatgtggtcc tggctggcct cacaagtgct gggattacga gctggagctg tcccaaacag
     2461 aactgtcttc cttttacaac ttgtgcatgt cagtccctgc atggaggccc ataaaccaca
     2521 cacaggcact gggccagtga gcactgcaag ctccctgggg aatgacgggg acgcagggag
     2581 aagatgacac cagagtcctt cttaaaaata ttacttgttt tattctccca tccccagagg
     2641 gtggtttatc cagaaaccaa gaaaataaaa atcaatcaga ataaactcaa gggggtgggt
     2701 ggagagaaac ccattaacga ccaggcaggc aggccagcgc ccacctccac ctcaggaggt
     2761 ccccgtagac ccctgcccac cgccataagg ggaaaatcag gagggggctg ggagggcagc
     2821 gaatcagcta tgtcttcatt atgagagtga gagaggtggc agagatatgc agctagatgg
     2881 atatatattt atataataaa tccgtaagtt aataaagtaa atagtaattc tc
//
