LOCUS       NM_001002806            2650 bp    mRNA    linear   ROD 29-JUL-2024
DEFINITION  Rattus norvegicus calpain 11 (Capn11), mRNA.
ACCESSION   NM_001002806 XM_579082
VERSION     NM_001002806.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2650)
  AUTHORS   Ben-Aharon,I., Brown,P.R., Shalgi,R. and Eddy,E.M.
  TITLE     Calpain 11 is unique to mouse spermatogenic cells
  JOURNAL   Mol Reprod Dev 73 (6), 767-773 (2006)
   PUBMED   16541461
REFERENCE   2  (bases 1 to 2650)
  AUTHORS   Puente,X.S. and Lopez-Otin,C.
  TITLE     A genomic analysis of rat proteases and protease inhibitors
  JOURNAL   Genome Res 14 (4), 609-622 (2004)
   PUBMED   15060002
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            BC097256.1.
            
            On Sep 29, 2005 this sequence version replaced NM_001002806.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC097256.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760389
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-2650              BC097256.1         1-2650
FEATURES             Location/Qualifiers
     source          1..2650
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="9"
                     /map="9q12"
     gene            1..2650
                     /gene="Capn11"
                     /note="calpain 11"
                     /db_xref="GeneID:408218"
                     /db_xref="RGD:1302946"
     exon            1..74
                     /gene="Capn11"
                     /inference="alignment:Splign:2.1.0"
     CDS             59..2206
                     /gene="Capn11"
                     /note="CANP 11; calcium-activated neutral proteinase 11"
                     /codon_start=1
                     /product="calpain 11"
                     /protein_id="NP_001002806.2"
                     /db_xref="GeneID:408218"
                     /db_xref="RGD:1302946"
                     /translation="MLNFSDISYAERGMVATINSNRLKDKGVGQYQNAYNYKNQNFED
                     LRASCLKMGELFEDPFFPAEPQSIGFKELGPKSQEVHNVYWQRPKDIIHNPQFITNDF
                     SPTDICQGILGDCWLLAAIGSLTTSPKLLFRVVPRSQSFKKNYAGIFHFQLWQFGHWL
                     NVVVDDRLPTKNNKLVFVHASHRQEFWGALLEKAYAKLNGSYEALTGGSTMEGLEDFT
                     GGMAQCIRLQNPPHNLLRLLRKALEKSSLMGCSIEATNSDDVEKMAHNMLVKGHAYAI
                     TGLQDVYYRDKLETLIRIQNPWGRIEWNGAWSDKAKEWEEVMPEVQMQLLHKKEDGEF
                     WMSYEDFMSNFTLLEICNLTPDALSSWDYKSCWHTTFFEGSWRRGSTAGGCRNYPETF
                     WSNPQFRISLPETDDPEDSSDKSEMVCTCLVALMQKNWRHAREGPQLLTIGFVVFSVP
                     KEFQNLQDIHLKKDFFMKYRDHGFSEIFTNTREVNSHLRLPPGEYVIIPSTFEPHKDA
                     DFLLRVFTEKHSETWLLDEVNMLEQLQEETITDADLDQNSVELFETLANRDSQVDMYD
                     LQKLLNKMSSKFKSFKSKGFSLDVCRRMVNLMDKDDSGKLGLHEFHILWKKIKKWMEI
                     FKECDQDRSGNLNSYEMRLAIEKAGIRMNNRVTEVVVARYADANMIVDFDNFINCFLR
                     LKAMFAFFLSMDTKKTGSICLNINQWLHITMWG"
     exon            75..325
                     /gene="Capn11"
                     /inference="alignment:Splign:2.1.0"
     exon            326..395
                     /gene="Capn11"
                     /inference="alignment:Splign:2.1.0"
     exon            396..514
                     /gene="Capn11"
                     /inference="alignment:Splign:2.1.0"
     exon            515..648
                     /gene="Capn11"
                     /inference="alignment:Splign:2.1.0"
     exon            649..817
                     /gene="Capn11"
                     /inference="alignment:Splign:2.1.0"
     exon            818..901
                     /gene="Capn11"
                     /inference="alignment:Splign:2.1.0"
     exon            902..987
                     /gene="Capn11"
                     /inference="alignment:Splign:2.1.0"
     exon            988..1062
                     /gene="Capn11"
                     /inference="alignment:Splign:2.1.0"
     exon            1063..1226
                     /gene="Capn11"
                     /inference="alignment:Splign:2.1.0"
     exon            1227..1402
                     /gene="Capn11"
                     /inference="alignment:Splign:2.1.0"
     exon            1403..1414
                     /gene="Capn11"
                     /inference="alignment:Splign:2.1.0"
     exon            1415..1626
                     /gene="Capn11"
                     /inference="alignment:Splign:2.1.0"
     exon            1627..1666
                     /gene="Capn11"
                     /inference="alignment:Splign:2.1.0"
     exon            1667..1732
                     /gene="Capn11"
                     /inference="alignment:Splign:2.1.0"
     exon            1733..1790
                     /gene="Capn11"
                     /inference="alignment:Splign:2.1.0"
     exon            1791..1855
                     /gene="Capn11"
                     /inference="alignment:Splign:2.1.0"
     exon            1856..1924
                     /gene="Capn11"
                     /inference="alignment:Splign:2.1.0"
     exon            1925..2003
                     /gene="Capn11"
                     /inference="alignment:Splign:2.1.0"
     exon            2004..2120
                     /gene="Capn11"
                     /inference="alignment:Splign:2.1.0"
     exon            2121..2179
                     /gene="Capn11"
                     /inference="alignment:Splign:2.1.0"
     exon            2180..2621
                     /gene="Capn11"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 ctgtcaagta ctgtgctagg tgttagctgt tctaggtgtc cacctgatag ctttcagcat
       61 gctgaacttc tcagacatct cttatgctga aaggggaatg gtggcaacca taaacagcaa
      121 caggctcaag gacaagggcg tgggccaata ccaaaatgcc tacaactata agaatcagaa
      181 ctttgaggac ctacgagcat catgtctcaa gatgggggaa ctgttcgaag accccttttt
      241 tcctgctgaa ccccagtcta taggcttcaa ggagctgggc cccaagtctc aagaagtgca
      301 taacgtctac tggcagcggc ccaaggatat catacataac ccccaattca ttacgaatga
      361 tttctctccc acggacatct gccaaggcat cctgggagac tgctggctgc tggccgccat
      421 tggctccctt accacgagcc ccaaactgct gttccgtgtg gtgcctagaa gtcagagctt
      481 caagaaaaac tatgctggca tcttccattt tcagctttgg cagttcgggc attggttgaa
      541 cgtggtggtg gacgaccggc tgcccactaa gaacaacaaa ttggtgttcg tgcacgcctc
      601 ccatcggcag gagttctggg gcgccctgct ggagaaggcc tacgccaagc tgaatggatc
      661 ctacgaagca ctgactggag gcagcaccat ggagggtttg gaagacttca caggcggcat
      721 ggcacagtgc attcggctcc agaatccccc tcacaacctg ctaaggctcc tcaggaaagc
      781 cttggagaag tcttccctca tgggttgctc catcgaagcc accaacagtg acgatgtgga
      841 aaaaatggcc cataatatgc tggtgaaagg tcacgcttat gcaatcaccg gcctacaaga
      901 tgtttactac agagacaagt tggaaaccct aattcgaatc cagaacccct ggggcaggat
      961 tgagtggaat ggagcctgga gtgacaaagc caaggagtgg gaagaggtga tgccggaagt
     1021 tcagatgcag ctgctgcaca agaaggaaga cggggagttc tggatgtcct atgaagactt
     1081 catgagcaac tttacattgc tggagatttg caacctcacc ccggacgcgc tctcctcctg
     1141 ggattacaag agctgctggc acacaacctt ctttgagggc agctggcgaa gggggagcac
     1201 tgcagggggc tgcagaaact accccgagac gttctggagc aacccccagt ttaggatctc
     1261 tctcccagaa acggatgatc cagaggatag ctctgacaaa agcgaaatgg tttgcacgtg
     1321 tctggtggcg ctgatgcaga agaactggag acatgctcga gagggacccc agctgctcac
     1381 cataggcttc gtcgtcttct cggtcccaaa ggagtttcag aacctccagg acatccacct
     1441 gaagaaagac ttctttatga aatatcggga ccatggcttt tcagagatct tcaccaacac
     1501 gagggaggtg aacagccatc ttcggctgcc ccccggggag tacgtcatta tcccctccac
     1561 ctttgagcct cataaagatg ctgacttcct gcttcgagtc ttcacagaga aacacagtga
     1621 gacctggttg ctggatgaag tcaacatgct tgagcaactc caagaggaga ccatcactga
     1681 tgcagatttg gaccagaatt ctgtagagtt gtttgagacg ttggcaaacc gggacagcca
     1741 agtagatatg tatgacctac aaaaacttct caacaagatg tcaagtaaat tcaagagctt
     1801 caagtcgaag ggctttagct tggatgtctg tcgccgtatg gtcaacctca tggacaaaga
     1861 cgattctgga aagctggggc ttcatgagtt ccatatccta tggaaaaaga tcaagaaatg
     1921 gatggaaatc ttcaaagagt gtgatcaaga ccgctcaggg aacttgaact cctacgagat
     1981 gcgcttggca atagagaaag caggcatcag aatgaacaac agggtgactg aggtggtcgt
     2041 tgctagatat gcagatgcca acatgatcgt ggattttgac aacttcatca actgtttcct
     2101 aaggctcaag gccatgtttg cgttcttctt atccatggac accaagaaaa ctggttctat
     2161 ttgcctgaat ataaaccagt ggctgcacat aaccatgtgg gggtagggag atgccgagcc
     2221 tggctccctc ccttctccct ccgccaacgg tgctcaggcg gggacggtga atgctccttg
     2281 tcgccctcgt tctccagtgc cccaggcgca gtgtttactt tgtgcccctg ctctgggctg
     2341 gacgggaact ctaaccccca ctccaccctc acaccacccg gagcactctc acaccgtatt
     2401 ttgactaaaa attaggtgga ttcccctcca taaccgcccc tccccaccag tttttctctg
     2461 gccaaggcag ccttgcagtt tggtgtttcc gcacgctgtc aactcacaac cgccctcttg
     2521 tcagaaattc cattgcctac caccaccacc cccaacccag cgtcgtacac attattctaa
     2581 taaataggac atggttaacc acctaattct taaacaccaa aaaaaaaaaa aaaaaaaaaa
     2641 aaaaaaaaaa
//
