LOCUS       XM_039103028            2192 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus calpain 1 (Capn1), transcript variant
            X4, mRNA.
ACCESSION   XM_039103028
VERSION     XM_039103028.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051336.1) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2192
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..2192
                     /gene="Capn1"
                     /note="calpain 1; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 1 mRNA, 9 ESTs, 21
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 95 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:29153"
                     /db_xref="RGD:2267"
     CDS             121..1866
                     /gene="Capn1"
                     /codon_start=1
                     /product="calpain-1 catalytic subunit isoform X1"
                     /protein_id="XP_038958956.1"
                     /db_xref="GeneID:29153"
                     /db_xref="RGD:2267"
                     /translation="MAEELITPVYCTGVSAQVQKQRDKELGLGRHENAIKYLGQDYEN
                     LRARCLQNGVLFQDDAFPPVSHSLGFKELGPNSSKTYGIKWKRPTELLSNPQFIVDGA
                     TRTDICQGALGDCWLLAAIASLTLNETILHRVVPYGQSFQEGYAGIFHFQLWQFGEWV
                     DVVVDDLLPTKDGKLVFVHSAQGNEFWSALLEKAYAKVNGSYEALSGGCTSEAFEDFT
                     GGVTEWYDLQKAPSDLYQIILKALERGSLLGCSINISDIRDLEAITFKNLVRGHAYSV
                     TDAKQVTYQGQRVNLIRMRNPWGEVEWKGPWSDNSYEWNKVDPYEREQLRVKMEDGEF
                     WMSFRDFIREFTKLEICNLTPDALKSRTLRNWNTTFYEGTWRRGSTAGGCRNYPATFW
                     VNPQFKIRLEEVDDADDYDSRESGCSFLLALMQKHRRRERRFGRDMETIGFAVYQVPR
                     ELAGQPVHLKRDFFLANASRAQSEHFINLREVSNRIRLPPGEYIVVPSTFEPNKEGDF
                     LLRFFSEKKAGTQELDDQIQANLPDEKVLSEEEIDDNFKTLFSKLAGDDMEISVKELQ
                     TILNRIISKHKDPAH"
ORIGIN      
        1 gggcagggag gagcgctctt cctggttggg ccctgccctg agctgccacc aaggaagcca
       61 gccccaggga ccgcagcaat ctcccaaact ccccttcccc aggcccatgt gtcccccagg
      121 atggcagagg agttaatcac acctgtgtac tgcaccgggg tgtcagccca agtgcagaag
      181 caacgggaca aggagttggg cttgggccgc catgaaaatg ccatcaagta cctgggccag
      241 gattatgaaa atcttcgtgc aagatgcctg cagaacgggg tcctcttcca agacgatgcc
      301 ttccctccag tttctcatag cttgggcttc aaggaactgg gtcccaattc ctctaaaacc
      361 tatggcatca agtggaagcg tcctacggaa ctgctgtcaa acccccagtt catcgtggat
      421 ggagccaccc gaacggacat ctgccaggga gcactggggg actgttggct cctggctgcc
      481 attgcctcgc tcactctcaa cgagactatc ctccaccgag tggttcccta cggccagagc
      541 ttccaggagg gctatgctgg catctttcat ttccagctgt ggcagtttgg ggagtgggta
      601 gatgtggtcg tggatgattt gctacccacc aaggatggaa agctggtgtt cgtgcactct
      661 gcccagggca acgagttctg gagcgctctc ctggagaaag cctatgcaaa agtgaatggc
      721 agctatgagg ccctttcggg aggctgcacc tcagaggcct tcgaggactt taccggtggg
      781 gtcactgagt ggtacgatct gcagaaggca cccagcgacc tctaccagat cattctgaag
      841 gccctggaac gaggctcctt gctgggctgc tccattaata tctccgatat ccgtgatttg
      901 gaggctatta cttttaagaa cctggtgagg ggccatgcat actctgtgac ggatgccaag
      961 caggtcactt accagggcca gcgggtgaac ctaatccgga tgcggaaccc ctggggtgaa
     1021 gtggagtgga aaggaccctg gagtgacaac tcctatgagt ggaacaaagt ggacccctat
     1081 gaacgtgagc agctgagggt caagatggag gacggggagt tctggatgtc cttccgggac
     1141 ttcatacgtg agttcaccaa actggaaatc tgcaacctta cacctgacgc ccttaagagc
     1201 agaaccctcc ggaactggaa taccacattt tacgagggca cctggcgccg gggaagcact
     1261 gctggaggct gcaggaacta cccagctacc ttctgggtaa acccccagtt caagatccgg
     1321 ctggaggagg tggatgacgc agacgactat gacagtcgag agtccggctg cagcttcttg
     1381 ttggccctca tgcagaagca tcgccgcagg gagcgtcgct ttggccggga catggagacc
     1441 attggttttg cagtgtacca ggtccctcgg gagttggcgg gtcagcctgt gcacttgaag
     1501 cgtgacttct tcctggccaa tgcttctcgg gcacaatcag agcactttat caaccttcga
     1561 gaggtcagta accgcatccg cctgccgccg ggggagtata tagtggtgcc ctccaccttc
     1621 gagcccaaca aagagggtga ctttctgctg cgcttctttt cagagaagaa ggctgggacc
     1681 caggaactag atgaccagat ccaggccaac ctccccgatg agaaagtgct ctctgaagag
     1741 gagatcgatg acaacttcaa aaccctgttc agcaagttag caggggatga catggagatc
     1801 agtgtcaagg agttacagac catcttgaac agaatcatta gcaaacacaa agaccctgcg
     1861 cactaacggc ttcagcctgg agtcgtgccg cagcatggtg aacctcatgg atcgagacgg
     1921 taatgggaaa ctgggcctgg tggagttcaa catcctgtgg aaccgcatcc gaaattacct
     1981 gaccatcttc cgaaagtttt gacctggaca agtctggcag catgagtgct tatgagatga
     2041 ggatggccat cgaggctgca ggcttcaagc ttaacaagaa gctgcatgag ctcatcatca
     2101 cccactactc agagcccgac ctggccgtgg actttgacaa ctttgtgtgc tgccttgtgc
     2161 gcctggagac cagtccgtga gtgtcccact tc
//
