LOCUS       XM_039103017            2219 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus calpain 1 (Capn1), transcript variant
            X1, mRNA.
ACCESSION   XM_039103017
VERSION     XM_039103017.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051336.1) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2219
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..2219
                     /gene="Capn1"
                     /note="calpain 1; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 1 mRNA, 13 ESTs, 21
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 226 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:29153"
                     /db_xref="RGD:2267"
     CDS             148..1893
                     /gene="Capn1"
                     /codon_start=1
                     /product="calpain-1 catalytic subunit isoform X1"
                     /protein_id="XP_038958945.1"
                     /db_xref="GeneID:29153"
                     /db_xref="RGD:2267"
                     /translation="MAEELITPVYCTGVSAQVQKQRDKELGLGRHENAIKYLGQDYEN
                     LRARCLQNGVLFQDDAFPPVSHSLGFKELGPNSSKTYGIKWKRPTELLSNPQFIVDGA
                     TRTDICQGALGDCWLLAAIASLTLNETILHRVVPYGQSFQEGYAGIFHFQLWQFGEWV
                     DVVVDDLLPTKDGKLVFVHSAQGNEFWSALLEKAYAKVNGSYEALSGGCTSEAFEDFT
                     GGVTEWYDLQKAPSDLYQIILKALERGSLLGCSINISDIRDLEAITFKNLVRGHAYSV
                     TDAKQVTYQGQRVNLIRMRNPWGEVEWKGPWSDNSYEWNKVDPYEREQLRVKMEDGEF
                     WMSFRDFIREFTKLEICNLTPDALKSRTLRNWNTTFYEGTWRRGSTAGGCRNYPATFW
                     VNPQFKIRLEEVDDADDYDSRESGCSFLLALMQKHRRRERRFGRDMETIGFAVYQVPR
                     ELAGQPVHLKRDFFLANASRAQSEHFINLREVSNRIRLPPGEYIVVPSTFEPNKEGDF
                     LLRFFSEKKAGTQELDDQIQANLPDEKVLSEEEIDDNFKTLFSKLAGDDMEISVKELQ
                     TILNRIISKHKDPAH"
ORIGIN      
        1 gggagggacc agagccgagg ggcggtggag gagggcgggg aggagggcag ggaggagcgc
       61 tcttcctggt tgggccctgc cctgagctgc caccaaggaa gccagcccca gggaccgcag
      121 caatctccca aactcccctt ccccaggatg gcagaggagt taatcacacc tgtgtactgc
      181 accggggtgt cagcccaagt gcagaagcaa cgggacaagg agttgggctt gggccgccat
      241 gaaaatgcca tcaagtacct gggccaggat tatgaaaatc ttcgtgcaag atgcctgcag
      301 aacggggtcc tcttccaaga cgatgccttc cctccagttt ctcatagctt gggcttcaag
      361 gaactgggtc ccaattcctc taaaacctat ggcatcaagt ggaagcgtcc tacggaactg
      421 ctgtcaaacc cccagttcat cgtggatgga gccacccgaa cggacatctg ccagggagca
      481 ctgggggact gttggctcct ggctgccatt gcctcgctca ctctcaacga gactatcctc
      541 caccgagtgg ttccctacgg ccagagcttc caggagggct atgctggcat ctttcatttc
      601 cagctgtggc agtttgggga gtgggtagat gtggtcgtgg atgatttgct acccaccaag
      661 gatggaaagc tggtgttcgt gcactctgcc cagggcaacg agttctggag cgctctcctg
      721 gagaaagcct atgcaaaagt gaatggcagc tatgaggccc tttcgggagg ctgcacctca
      781 gaggccttcg aggactttac cggtggggtc actgagtggt acgatctgca gaaggcaccc
      841 agcgacctct accagatcat tctgaaggcc ctggaacgag gctccttgct gggctgctcc
      901 attaatatct ccgatatccg tgatttggag gctattactt ttaagaacct ggtgaggggc
      961 catgcatact ctgtgacgga tgccaagcag gtcacttacc agggccagcg ggtgaaccta
     1021 atccggatgc ggaacccctg gggtgaagtg gagtggaaag gaccctggag tgacaactcc
     1081 tatgagtgga acaaagtgga cccctatgaa cgtgagcagc tgagggtcaa gatggaggac
     1141 ggggagttct ggatgtcctt ccgggacttc atacgtgagt tcaccaaact ggaaatctgc
     1201 aaccttacac ctgacgccct taagagcaga accctccgga actggaatac cacattttac
     1261 gagggcacct ggcgccgggg aagcactgct ggaggctgca ggaactaccc agctaccttc
     1321 tgggtaaacc cccagttcaa gatccggctg gaggaggtgg atgacgcaga cgactatgac
     1381 agtcgagagt ccggctgcag cttcttgttg gccctcatgc agaagcatcg ccgcagggag
     1441 cgtcgctttg gccgggacat ggagaccatt ggttttgcag tgtaccaggt ccctcgggag
     1501 ttggcgggtc agcctgtgca cttgaagcgt gacttcttcc tggccaatgc ttctcgggca
     1561 caatcagagc actttatcaa ccttcgagag gtcagtaacc gcatccgcct gccgccgggg
     1621 gagtatatag tggtgccctc caccttcgag cccaacaaag agggtgactt tctgctgcgc
     1681 ttcttttcag agaagaaggc tgggacccag gaactagatg accagatcca ggccaacctc
     1741 cccgatgaga aagtgctctc tgaagaggag atcgatgaca acttcaaaac cctgttcagc
     1801 aagttagcag gggatgacat ggagatcagt gtcaaggagt tacagaccat cttgaacaga
     1861 atcattagca aacacaaaga ccctgcgcac taacggcttc agcctggagt cgtgccgcag
     1921 catggtgaac ctcatggatc gagacggtaa tgggaaactg ggcctggtgg agttcaacat
     1981 cctgtggaac cgcatccgaa attacctgac catcttccga aagttttgac ctggacaagt
     2041 ctggcagcat gagtgcttat gagatgagga tggccatcga ggctgcaggc ttcaagctta
     2101 acaagaagct gcatgagctc atcatcaccc actactcaga gcccgacctg gccgtggact
     2161 ttgacaactt tgtgtgctgc cttgtgcgcc tggagaccag tccgtgagtg tcccacttc
//
