LOCUS       XM_008767679            3301 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus calnexin (Canx), transcript variant
            X1, mRNA.
ACCESSION   XM_008767679
VERSION     XM_008767679.3
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051345.1) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_008767679.4.
            
            On Jan 21, 2021 this sequence version replaced XM_008767679.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3301
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="10"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..3301
                     /gene="Canx"
                     /note="calnexin; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 4 mRNAs, 222 ESTs, 11
                     long SRA reads, 23 Proteins, and 100% coverage of the
                     annotated genomic feature by RNAseq alignments, including
                     203 samples with support for all annotated introns"
                     /db_xref="GeneID:29144"
                     /db_xref="RGD:2266"
     CDS             229..2004
                     /gene="Canx"
                     /codon_start=1
                     /product="calnexin isoform X1"
                     /protein_id="XP_008765901.1"
                     /db_xref="GeneID:29144"
                     /db_xref="RGD:2266"
                     /translation="MEGKWLLCLLLVLGTAAIQAHDGHDDDMIDIEDDLDDVIEEVED
                     SKSKSDTSTPPSPKVTYKAPVPTGEVYFADSFDRGSLSGWILSKAKKDDTDDEIAKYD
                     GKWEVDEMKETKLPGDKGLVLMSRAKHHAISAKLNKPFLFDTKPLIVQYEVNFQNGIE
                     CGGAYVKLLSKTSELNLDQFHDKTPYTIMFGPDKCGEDYKLHFIFRHKNPKTGVYEEK
                     HAKRPDADLKTYFTDKKTHLYTLILNPDNSFEILVDQSVVNSGNLLNDMTPPVNPSRE
                     IEDPEDRKPEDWDERPKIADPDAVKPDDWDEDAPSKIPDEEATKPEGWLDDEPEYIPD
                     PDAEKPEDWDEDMDGEWEAPQIANPKCESAPGCGVWQRPMIDNPNYKGKWKPPMIDNP
                     NYQGIWKPRKIPNPDFFEDLEPFRMTPFSAIGLELWSMTSDIFFDNFIISGDRRVVDD
                     WANDGWGLKKAADGAAEPGVVGQMLEAAEERPWLWVVYILTVALPVFLVILFCCSGKK
                     QSNAMEYKKTDAPQPDVKDEEGKEEEKNKGDEEEEEEKLEEKQKSDAEEDGGTGSQDE
                     EDSKPKAEEDEILNRSPRNRKPRRE"
ORIGIN      
        1 ggttgggctt cgtgcggtgg ggctcgctcg cgcggcggcg gtagccgagg cctcttagtt
       61 ctgcggcacg tgacggtcgg gccgcctctg ccgctgtctc cactgcagca cggggcccgg
      121 tgtgcgggtg ggagaaggtg agggagccgc cagtggtccc cgggaggctc gaggtgagac
      181 gggaagcgtg tgcggggacc tcaggcctgg gacgagtctg gatagatcat ggaagggaag
      241 tggttactgt gtttgctact ggtccttgga actgcagcta ttcaggctca tgatggacat
      301 gatgatgaca tgattgatat tgaagatgat cttgatgatg ttatcgaaga ggtagaagat
      361 tcaaaatcta aatcagatac cagcactcct ccatctccaa aggtcaccta caaagctcca
      421 gttccaacag gggaggttta ttttgctgac tcctttgaca gagggtctct gtcagggtgg
      481 attttatcta aagccaaaaa agacgacact gatgatgaaa ttgccaaata tgacggaaag
      541 tgggaggtag atgaaatgaa ggaaacaaag cttccaggtg ataaaggact tgtattgatg
      601 tctcgggcca agcatcatgc catctctgct aaactgaaca agcccttcct gtttgatacc
      661 aagcctctca ttgttcagta tgaggttaac tttcagaatg gaatagaatg cggtggtgcc
      721 tacgtgaagc tgctatccaa gacctcagaa ctcaacctgg atcaattcca cgacaagact
      781 ccgtatacta ttatgtttgg tccagataaa tgtggagagg actacaaact gcatttcatc
      841 tttcgccaca aaaaccccaa gacaggtgta tatgaagaaa aacatgctaa gaggccagat
      901 gcagatctga agacctattt cactgacaag aaaacacatc tttacacatt aatcttgaat
      961 ccagacaata gttttgaaat attagttgac cagtctgttg tgaacagtgg aaacctgcta
     1021 aatgacatga cccctccggt aaacccttca cgtgaaattg aggacccaga agaccggaag
     1081 cctgaagatt gggatgaaag gcccaaaata gcagatccag atgctgtcaa gccagatgac
     1141 tgggatgaag atgccccttc taagattcca gatgaagagg ccacaaagcc tgaaggctgg
     1201 ttagatgatg aacccgagta tattccagac cctgatgcag agaaaccaga agattgggat
     1261 gaggatatgg acggagaatg ggaggctcct cagattgcca accctaagtg tgagtccgcc
     1321 cctgggtgtg gtgtctggca gcgacctatg attgacaacc ccaattataa gggcaaatgg
     1381 aagcctccta tgattgacaa tcctaactac cagggaatct ggaaaccaag gaaaataccc
     1441 aatccagatt tctttgaaga cctggaacct tttaggatga ctcctttcag cgctattggt
     1501 ttggagctct ggtccatgac atccgacatc ttttttgaca actttatcat tagtggtgac
     1561 cgaagagtag ttgatgactg ggccaatgat gggtggggcc tgaagaaagc tgctgatggg
     1621 gctgcagagc caggtgtagt ggggcagatg ctggaggcag ctgaagagcg tccatggctt
     1681 tgggtggtct acattctgac tgtagcgttg ccagtgttcc ttgtgatcct cttctgctgt
     1741 tctggaaaga aacagtccaa tgctatggag tacaagaaga cagatgctcc ccagccagat
     1801 gtgaaggacg aagaagggaa ggaagaagag aagaacaagg gagatgaaga ggaagaagag
     1861 gagaagcttg aagagaaaca gaagagtgat gctgaagaag atggtggcac tggcagtcaa
     1921 gatgaggaag atagcaagcc taaagcagag gaggatgaaa ttttgaacag atcaccaaga
     1981 aacagaaagc cacgaagaga gtgaaacaat cttaagaact tgatctgtga tttcctctcc
     2041 ctccccttcc cctgcaaata tggtcctagg agagggcctg gtgtacctta ggtgggagct
     2101 cagaaaacct caagatgtca ccatcaacag gttccagtga atactagcct gtaattttaa
     2161 acatctagca gtaaactatt gcagttgtaa tgtaaaggac cctgtttctg tagaaaagaa
     2221 aacatttaac ataatggttg tgaaatgtaa catgaagcaa ctaactagtg ttttgttgtt
     2281 tttaaaatct tccaggtttg tctttttttc ctttttttaa agatacaatg atagaatttt
     2341 tgccaattta aaatcttggc ttaatttaat atattaattt gttcatgcag aaataacacc
     2401 aacattagga atgctaggga gaatgaattg cagtttttat aacaattttt ttaagtttgg
     2461 tattaaaaca ttcatgtgtc tgtcccaaaa attgtaatca cgttcaagtg cagtcatttg
     2521 tggttataat cttgttttgt gtgcttccat tacttaattc ctcttaagga cacagagatt
     2581 agatggaagc tcaatttata tcaaatttac attgtattga atagacccaa aaagaactaa
     2641 aaggagactt tcacttggtg ttggtcagat cataaagtgc agtgttctgt tgttggaact
     2701 gctccattca caaacagctt tgcagaggaa aggagctggc ttaatgcagc agtttatact
     2761 gtacttccca tataggaggt ctgacagctc agatcctctg gagcacaagg ctttttaagg
     2821 aaggctggtg tgcctgagta gataattaca tcacttgttc cactgtgttg acactgtttt
     2881 cctcatgcat ctcctcagtc cctagctttc tctgctatgc attttcttca cagtgcagct
     2941 tgcagtccgt tgctgaaaat tataagctct gcatagtgtt ggctttactg tgattacatg
     3001 tttctttttt agcaagccca catctttcta gggtccaact acaggataga ttacagactt
     3061 tccattagtg tctatttctt ttactctgtg tagactttag aaagtctaat ccagagatgg
     3121 gccaattcag aattgactat aattgaacac aggctaaaag tatttatggg aggattgaca
     3181 catagcatga gttatttgac ttttgtgtag gatatttaaa atcttcattt gcagttcatg
     3241 taacagttgc gtcttaaaat tcacacaata aagcagtcct gttcaatttt attttatttt
     3301 a
//
