LOCUS       XM_039111170            1848 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus calreticulin 4 (Calr4), transcript
            variant X1, mRNA.
ACCESSION   XM_039111170
VERSION     XM_039111170.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051340.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039111170.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1848
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="5"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..1848
                     /gene="Calr4"
                     /note="calreticulin 4; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 7 ESTs, 10 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 32 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:689537"
                     /db_xref="RGD:1591090"
     CDS             171..1505
                     /gene="Calr4"
                     /codon_start=1
                     /product="calreticulin isoform X1"
                     /protein_id="XP_038967098.1"
                     /db_xref="GeneID:689537"
                     /db_xref="RGD:1591090"
                     /translation="MLRLGKNRPGQMPEPKGPGPAGLSRAQVQTDGEDVSGGCRDGWT
                     KRWVQSKHQSDYGKFRLDSGKFYQDKERDKGLQTTEDAKFYALSARFKPFSNENETLV
                     VQFSVKHEQGIDCGGGYVKLFPATLNQEDMHSESQYYIMFGPDICGFGNNRLQVILYH
                     RGKYHENNKTLKCRINKDTHLYTLILRPNATYEVKIDNEKVTGGELEADWDFLPPKKI
                     KDPYARKPRKWDERLQIEDPEDKKPEDWQDSEFIPDPDAKKPDDWNEAMDGVWEGPLI
                     PNVKYKGEWKPRIIDNPNYQGEWIHPEIDNPKYRPDPTICHYHNISVLGLDLWQVKSG
                     SIFDNFLLTNDEEFAEEVGNMTWGLRKDVEQQWRELYEEMEKQKEAEEAKKKREKQRA
                     KQEDIWGLDEEDEEENEEDAEEEAEERPKQEGSGERASVDQKEAHFEQKDEL"
ORIGIN      
        1 agacttgtct gtgaaaactt ggctgcagag acattcttac acaaagggcc tttgtaccca
       61 gctggcatag acacactggg gacagcccag caggactgag gaacaccctg cagctcaggc
      121 ctccgactga taagcaattg agaccatctg tgaatcaggg acacttggac atgctgaggc
      181 tggggaagaa tcgccctgga cagatgcccg aaccaaaggg acctggtcca gctggccttt
      241 ccagagctca agtacaaact gatggcgagg atgtctctgg aggctgcagg gatggatgga
      301 caaaacggtg ggtgcaatct aaacatcagt cagattacgg taaattccgg cttgattcag
      361 gaaaatttta tcaagataaa gagagagata aaggtctcca gaccacagaa gatgccaagt
      421 tctatgccct ttccgccagg tttaagccat tcagcaatga gaatgagacc ttggtggttc
      481 agttttcagt aaaacatgag cagggcatcg attgcggcgg tgggtatgtg aaactctttc
      541 ctgccacgct gaaccaggag gatatgcact cagaatccca gtattacatc atgttcggcc
      601 cagacatctg tggctttggc aacaacagac tacaggtcat cctttatcac cgagggaaat
      661 accatgagaa caacaagacc ctcaagtgca ggattaataa agacactcac ttgtacacac
      721 tgatccttcg ccctaatgct acttacgagg ttaaaattga caatgagaag gtgacaggag
      781 gagaactgga agctgactgg gacttcttgc ctcccaagaa aataaaagat ccctacgcca
      841 ggaaaccgag gaaatgggac gaacggctac agatagagga tcctgaagat aagaaacctg
      901 aggactggca ggactctgaa ttcatcccag accctgatgc caagaagccg gatgactgga
      961 atgaggcaat ggatggggtg tgggaagggc ccctgatacc aaatgtcaag tacaagggag
     1021 aatggaagcc tcggatcatt gacaatccca attaccaggg ggagtggatt cacccagaga
     1081 tagacaaccc caaatacagg cctgacccca ccatttgtca ctaccataat atcagcgtcc
     1141 ttggcctgga tctttggcag gtgaaatcag gcagcatctt tgacaatttc cttctaacaa
     1201 atgatgaaga atttgctgaa gaggttggaa atatgacctg gggattaaga aaggatgtgg
     1261 agcagcagtg gagagagctg tatgaagaaa tggagaaaca gaaggaggcg gaagaggcca
     1321 agaagaaaag ggaaaagcag cgagccaagc aagaagacat ctggggacta gatgaggagg
     1381 atgaggagga aaatgaagag gacgctgagg aggaagcaga ggaaaggccc aagcaggaag
     1441 gcagcggcga gagggcatca gtggatcaaa aggaagccca ttttgagcag aaggatgaac
     1501 tgtaactgca gagacaatgg gtatgggaga agcaagagac ggtgcttagg aagggaaatg
     1561 gtcacaagct tagcaaatta tggggagtaa aacaactgtc tttatagata aactttggat
     1621 ttatatttct actccccttc cctgctctat tttgcttatt ggtagaaagg gaatgataat
     1681 tttatctcag gaggtggctg tagagactga atgaggtaat gtgtgtaaag tgcccaaagt
     1741 aaatacatta taaaaatgta gtagttaaaa ctactgccat tatcatggtg ttcaataaat
     1801 tatttgtcgg taataaactt ctatataaac ttggttcttt catttgaa
//
