LOCUS       NM_001024977            1697 bp    mRNA    linear   ROD 12-JUN-2024
DEFINITION  Rattus norvegicus calcium homeostasis modulator family member 5
            (Calhm5), mRNA.
ACCESSION   NM_001024977
VERSION     NM_001024977.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1697)
  AUTHORS   Prunotto,M., Farina,A., Lane,L., Pernin,A., Schifferli,J.,
            Hochstrasser,D.F., Lescuyer,P. and Moll,S.
  TITLE     Proteomic analysis of podocyte exosome-enriched fraction from
            normal human urine
  JOURNAL   J Proteomics 82, 193-229 (2013)
   PUBMED   23376485
REFERENCE   2  (bases 1 to 1697)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
REFERENCE   3  (bases 1 to 1697)
  AUTHORS   Gerhard,D.S., Wagner,L., Feingold,E.A., Shenmen,C.M., Grouse,L.H.,
            Schuler,G., Klein,S.L., Old,S., Rasooly,R., Good,P., Guyer,M.,
            Peck,A.M., Derge,J.G., Lipman,D., Collins,F.S., Jang,W., Sherry,S.,
            Feolo,M., Misquitta,L., Lee,E., Rotmistrovsky,K., Greenhut,S.F.,
            Schaefer,C.F., Buetow,K., Bonner,T.I., Haussler,D., Kent,J.,
            Kiekhaus,M., Furey,T., Brent,M., Prange,C., Schreiber,K.,
            Shapiro,N., Bhat,N.K., Hopkins,R.F., Hsie,F., Driscoll,T.,
            Soares,M.B., Casavant,T.L., Scheetz,T.E., Brown-stein,M.J.,
            Usdin,T.B., Toshiyuki,S., Carninci,P., Piao,Y., Dudekula,D.B.,
            Ko,M.S., Kawakami,K., Suzuki,Y., Sugano,S., Gruber,C.E.,
            Smith,M.R., Simmons,B., Moore,T., Waterman,R., Johnson,S.L.,
            Ruan,Y., Wei,C.L., Mathavan,S., Gunaratne,P.H., Wu,J., Garcia,A.M.,
            Hulyk,S.W., Fuh,E., Yuan,Y., Sneed,A., Kowis,C., Hodgson,A.,
            Muzny,D.M., McPherson,J., Gibbs,R.A., Fahey,J., Helton,E.,
            Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M.,
            Madari,A., Young,A.C., Wetherby,K.D., Granite,S.J., Kwong,P.N.,
            Brinkley,C.P., Pearson,R.L., Bouffard,G.G., Blakesly,R.W.,
            Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J.,
            Myers,R.M., Butterfield,Y.S., Griffith,M., Griffith,O.L.,
            Krzywinski,M.I., Liao,N., Morin,R., Palmquist,D., Petrescu,A.S.,
            Skalska,U., Smailus,D.E., Stott,J.M., Schnerch,A., Schein,J.E.,
            Jones,S.J., Holt,R.A., Baross,A., Marra,M.A., Clifton,S.,
            Makowski,K.A., Bosak,S. and Malek,J.
  CONSRTM   MGC Project Team
  TITLE     The status, quality, and expansion of the NIH full-length cDNA
            project: the Mammalian Gene Collection (MGC)
  JOURNAL   Genome Res 14 (10B), 2121-2127 (2004)
   PUBMED   15489334
  REMARK    Erratum:[Genome Res. 2006 Jun;16(6):804. Morrin, Ryan [corrected to
            Morin, Ryan]]
REFERENCE   4  (bases 1 to 1697)
  AUTHORS   Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
            Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
            Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
            Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
            Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
            Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
            Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
            Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
            Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
            McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
            Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
            Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
            Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
            Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
            Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
            Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
            Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
            Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
  CONSRTM   Mammalian Gene Collection Program Team
  TITLE     Generation and initial analysis of more than 15,000 full-length
            human and mouse cDNA sequences
  JOURNAL   Proc Natl Acad Sci U S A 99 (26), 16899-16903 (2002)
   PUBMED   12477932
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            BC089225.1.
            
            On Mar 18, 2021 this sequence version replaced NM_001024977.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC089225.1, FM090110.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMD00132281, SAMD00132308
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-1697              BC089225.1         1-1697
FEATURES             Location/Qualifiers
     source          1..1697
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="20"
                     /map="20q11"
     gene            1..1697
                     /gene="Calhm5"
                     /gene_synonym="Fam26e; RGD1310405"
                     /note="calcium homeostasis modulator family member 5"
                     /db_xref="GeneID:294431"
                     /db_xref="RGD:1310405"
     exon            1..647
                     /gene="Calhm5"
                     /gene_synonym="Fam26e; RGD1310405"
                     /inference="alignment:Splign:2.1.0"
     CDS             108..1037
                     /gene="Calhm5"
                     /gene_synonym="Fam26e; RGD1310405"
                     /note="protein FAM26E; family with sequence similarity 26,
                     member E"
                     /codon_start=1
                     /product="calcium homeostasis modulator protein 5"
                     /protein_id="NP_001020148.1"
                     /db_xref="GeneID:294431"
                     /db_xref="RGD:1310405"
                     /translation="MDAFQSILKFFLNQKTAIGYSFMALLTVGSERLFSLVAFKCPCS
                     IENTAYGLVFLFAPAWVLLILGFFLNNKAWRLFTGCCMNPQKIFPRRRCCRFFYVLGH
                     ITLSSLVAPVMWLSVALLNGTFYECAMSGTRSTRLLEMICKGKPKECWEELHKVSCGK
                     SSMAAMDSEEVRLSLQAQSQILGWCLICSASFFSLLTTCYARCRSKVSYLQLSFWKTY
                     AQREKEQLENKLLEYANKLSERNLKCFFENKKPDPFPMPSFAAWEAASELHSFHQDRE
                     HYSTLHKVVDDGLEQTPQEEETTMILVGTAQSL"
     exon            648..1697
                     /gene="Calhm5"
                     /gene_synonym="Fam26e; RGD1310405"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 cagaggagga ctgttctttc aaaagagctc caccctcagc cacagccata gttgctgtgt
       61 taaaaccaag gcaaacgtct tttcctcttc gtgtgtgtgt gtccgacatg gatgcttttc
      121 agagcatttt aaaattcttt cttaaccaaa aaactgctat tggttacagc ttcatggctt
      181 tgctcaccgt gggaagtgaa cgtctcttct ccctagtggc atttaagtgc ccctgcagca
      241 ttgagaacac tgcatatgga ctggttttcc tctttgcccc tgcctgggtg ttactgatcc
      301 ttggattctt tctgaataac aaggcctgga ggctcttcac tggttgctgt atgaaccccc
      361 aaaaaatatt tcctaggaga cgctgctgcc gcttcttcta cgtcctgggc cacatcacac
      421 tgagttcact ggtggctccg gtgatgtggc tctctgtggc tttgcttaat gggacgtttt
      481 atgaatgtgc tatgagtgga acaagaagta caagactcct ggagatgatt tgcaagggga
      541 agcccaaaga gtgctgggaa gaactgcaca aagtctcttg cggtaaaagt agcatggcag
      601 ccatggacag tgaagaggtg aggctgtctc tgcaggccca gtctcagatt ctaggatggt
      661 gcctgatttg ttcagcatcc ttcttctccc tgctgaccac ttgttatgca cgctgcagat
      721 ctaaagtcag ctatctgcag ctgagttttt ggaagacata tgcacaaagg gagaaggagc
      781 aattggaaaa caaactcctg gaatatgcca acaagctgag cgagaggaac ctcaaatgct
      841 tttttgaaaa caagaagcca gatccttttc ccatgccctc ttttgctgcc tgggaggctg
      901 catccgagct acactccttc caccaagacc gtgagcacta tagcaccctc cacaaggtgg
      961 tagatgatgg tctggaacaa actccccaag aggaagagac gacaatgatc cttgtgggta
     1021 ccgcccagag tttatgaatc atccaccatc cctggctcag atatccagtg gtacactcat
     1081 tctgagttga atcttctgct gtttccatga caacctgagt ctctgcattt tcttaccatt
     1141 agagcttctt tagacgataa taacacagtt ggaaactgtt ctgaaacctc caagagcaat
     1201 gtctggatgt gctcagactg atgctgagtg atgactgact cagggttgtg cccaggaggt
     1261 ccaacagttg gtccaagttc taagatttta tgactcagcc ctcaaagttt ggcatggtgg
     1321 tctgccactg tttgcaagca ttcggggaga ggtctgtgca cagtggtatc cacactgtgg
     1381 ccatcaggat ccctttcaga aatatatcca acacctttta agttggaagg aattctgcca
     1441 tttaattaac attcctttct atagaatacc tccattccca aggcttagta aactgaaaga
     1501 atataatgtc taaacatcag aggttcctgc attttcccca atttctgaaa gtctgcctgg
     1561 ggacagggct gcctcatgac tgctgtgggt ggtaggcgct taaaccttca caggacaatt
     1621 tctacattca aaagacaacc acataaggct tacatacaag actgtattga tataaagaca
     1681 aatacattaa tattgta
//
