LOCUS       XM_039087863            3387 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus calcium binding and coiled-coil domain
            2 (Calcoco2), mRNA.
ACCESSION   XM_039087863
VERSION     XM_039087863.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051345.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 1% of CDS bases
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..3387
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="10"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..3387
                     /gene="Calcoco2"
                     /note="calcium binding and coiled-coil domain 2; Derived
                     by automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 2 Proteins, and 92% coverage of the annotated genomic
                     feature by RNAseq alignments"
                     /db_xref="GeneID:303479"
                     /db_xref="RGD:1559974"
     CDS             141..2720
                     /gene="Calcoco2"
                     /codon_start=1
                     /product="calcium-binding and coiled-coil
                     domain-containing protein 2"
                     /protein_id="XP_038943791.1"
                     /db_xref="GeneID:303479"
                     /db_xref="RGD:1559974"
                     /translation="MEERHSNFSQVLFNNVEKFYIPGDVVCCYTLTEKFVPRPKDWVG
                     VFKVGWETTQEYYTFMWAPMPDDLNTESATQQKIQFKAYYLPKDEEHYQFCYVDEDGL
                     VQGISIPFQFPPPDSEEDIMIVINKEKMDEMEQLREELYQENQELKDKYADLHEQLQR
                     KQVALEATQRMNESLGQEVEQKASWEKQKASWEEQKASWEEQKASWESEMLHLKEYNQ
                     KITSEKENMEIRIEDLLIQLMYKYRGLVDFILKDEEKTKHWERLQKESNSQLSSSFTE
                     QKQHWKELERIVEMLKENDAAVWKEEQELKARVVALQQKLININIDYNHLQQDNDILC
                     GENRRLNTEICLLKNENKALRSSLANKDVSSNERAAEPEVPTPQVDAEPEAPTPQVDA
                     EPEDPSAQADVEPEVPSAQADAEPEVPSAQADAEPEVPSAQADAEPEVPSPQADAEPE
                     VPSPQADAEPEVPSAQADAETEVPSQADAEPEVPSPQADAEPEVPSAQADAEPEVPSP
                     HVDAEPEVPSPHIDAEPEAPSAQADAEPEAPSAQADAEPEVPSPHVDAEPEVPSAQAD
                     AEPEVPSAQADAEPEAPSAQADVEPEAPSAQADAEPEAPSAQVAEPEVPSAQADAEPE
                     VPSAQADAEPEAPSAQVAEPEVPSAQADAEPEVPSPQADAEPEVPSPQADAEPEVPPA
                     QVDAEPEVPSPQADAEPEVSSPQAAAEPEVSSPQVDAEPEVSSPQAAAEPEVPSPQAD
                     AEPEVPSPQADAEPEVPSPQVDAESEAPSPQAAPESEVPSPQAAPESEVPSAQRAGSS
                     NPLLWECDEDSYTGISGSSLYMDPSWEQLEPKDLYCPFCMKTYRATRRWVSWDNCPTL
                     IPA"
ORIGIN      
        1 tctggagctg gggaccaaac ccagggcctt gcgcttgcta ggcaagcact ctaccacgga
       61 gctaaatccc caaccccata tcttctttaa cttctattga ggcaggttct catactctta
      121 tttcctgaca ggactccacc atggaggagc gccatagcaa tttctctcag gtcctgttta
      181 acaatgtgga gaagttctat attcctggag atgtcgtgtg ctgttacacc ctcactgaaa
      241 agttcgtccc tcgtcccaag gactgggtcg gcgtttttaa agtagggtgg gagacgaccc
      301 aggagtatta caccttcatg tgggccccca tgcccgatga cctaaacaca gaatcagcca
      361 cacagcagaa aatccaattc aaagcgtact atctgcccaa ggatgaagag cattaccagt
      421 tctgctatgt ggatgaagat ggtttggtcc agggaataag tatccccttc cagtttcctc
      481 caccagactc tgaggaggac ataatgattg ttatcaataa ggaaaagatg gacgagatgg
      541 aacagctcag ggaggagctt taccaagaaa accaggaact gaaggacaag tatgctgacc
      601 tccatgagca gctccagagg aagcaggtgg cattggaggc aacacagagg atgaatgaga
      661 gcttaggaca ggaagtggaa cagaaggcct cttgggagaa acagaaggcc tcttgggagg
      721 aacagaaggc ctcttgggag gaacagaagg cctcttggga gagtgagatg ctccacctga
      781 aggaatacaa ccagaagata acctcggaaa aggagaacat ggagatcaga atagaagacc
      841 ttctgatcca gctgatgtat aaatacagag gattggtgga ttttatcttg aaagatgaag
      901 aaaagacaaa gcattgggaa cggctccaga aagaaagcaa cagccagctc tcctctagct
      961 tcactgaaca gaagcagcac tggaaagagc ttgaacggat agtggaaatg ctgaaggaga
     1021 atgatgctgc agtatggaag gaagagcagg agctaaaggc tagagttgtc gctctgcaac
     1081 aaaagctcat caacatcaac atcgactaca accacctgca gcaagataac gacatcctgt
     1141 gtggagagaa caggaggcta aacacagaaa tctgtctcct gaagaatgag aacaaggcac
     1201 tgaggagctc cctggccaac aaggatgtct cttcaaatga aagagctgct gagcccgagg
     1261 tccccacacc tcaggttgat gctgagcccg aggcccccac acctcaggtt gatgctgagc
     1321 ccgaggaccc ctcagctcag gctgatgttg agcccgaggt cccctctgct caggctgatg
     1381 ctgagcccga ggtcccctct gctcaggctg atgctgagcc cgaggtcccc tctgctcagg
     1441 ctgatgctga gcccgaggtc ccctctcctc aggctgatgc tgagcccgag gtcccctctc
     1501 ctcaggctga cgctgagccg gaggtcccct cagctcaggc tgatgctgag accgaggtcc
     1561 cctctcaggc tgatgctgag ccggaggtcc cctctcctca ggctgacgct gagccggagg
     1621 tcccctcagc tcaggctgat gctgagcccg aggtcccctc tcctcacgtt gatgctgagc
     1681 cagaggtccc ctctcctcac attgatgctg agcccgaggc cccctcagct caggctgatg
     1741 ctgagcccga ggccccctca gctcaggctg atgctgagcc cgaggtcccc tctcctcacg
     1801 ttgatgctga gcccgaggtc ccctctgctc aggctgatgc tgagcccgag gtcccctcag
     1861 ctcaggctga tgctgagccc gaggccccct cagctcaggc tgatgttgag cccgaggccc
     1921 cctcagctca ggctgatgct gagcccgagg ccccctcagc tcaggttgct gagcccgagg
     1981 tcccctctgc tcaggctgat gctgagcccg aggtcccctc agctcaggct gatgctgagc
     2041 ccgaggcccc ctcagctcag gttgctgagc ccgaggtccc ctctgctcag gctgatgctg
     2101 agccggaggt cccctctcct caggctgatg ctgagccgga ggtcccctct cctcaggctg
     2161 atgctgagcc cgaggtcccc ccagctcagg ttgatgctga gcccgaggtc ccctctcctc
     2221 aggctgatgc tgagcccgag gtctcctctc ctcaggctgc tgctgagccc gaggtctcct
     2281 ctcctcaggt tgatgctgag cccgaggtct cctctcctca ggctgctgct gagcccgagg
     2341 tcccctctcc tcaggctgat gctgagcccg aggtcccctc tcctcaggct gatgctgagc
     2401 ccgaggtccc ctcacctcag gttgatgctg agtccgaggc cccctcacct caggctgctc
     2461 ctgaatccga ggtcccctca cctcaggctg ctcctgaatc cgaggtcccc tcagctcaaa
     2521 gagctggcag ctcaaaccct ttgctgtggg aatgtgatga agactcatat actggtatct
     2581 caggaagttc tctttacatg gacccaagct gggagcagct ggagcccaaa gatttgtatt
     2641 gtccattctg tatgaagacc tacagagcaa caaggagatg ggtctcctgg gacaactgtc
     2701 ccacactcat ccctgcctga gcactccagc ctgcgcgtct ctgctgggcc atattctgtg
     2761 tggaatatgg tttctactgt aaatgatcct atcggagaag gcttgcctag ccagaaatca
     2821 ttagaacccc taatcgttag aactgctgcc tataaaactg tcctaggatg acattgaaca
     2881 ctgctgccgc caccctgtca cgaccagcct cagcttgtca cctccagtgc ccaggacgaa
     2941 ggtactttct gattcacacc acagcagctg attgacacta agtcattgcc ttctgagata
     3001 cttagcacat tcattcaggc cttgatgcat tcgtccccag gcttcagtcc taaccttgag
     3061 ggcagcaagc aaaggggacc acaagtgaat ttcttcacca gtctttcaag cagttgcatc
     3121 aaattatccc aatgacacag cagatttgaa ggttattagc ttccaaaaga gacctttgcc
     3181 atttttgttt tactttcttt ccacaaggcc gtcttacgtc atggagtttt tttcccctta
     3241 ctctggctaa tatgaaattc tgtgtaacct ggaactagca agataaactt gctgactcac
     3301 cttcctaagt cccgaggctg gtcccgaggc tggtcccgag acactgcttc agtcgcttag
     3361 tgactaatta ggaattgtta gtatgta
//
