LOCUS       NM_001012052            2890 bp    mRNA    linear   ROD 02-JUN-2024
DEFINITION  Rattus norvegicus cancer antigen 1 (Cage1), mRNA.
ACCESSION   NM_001012052 XM_225249
VERSION     NM_001012052.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2890)
  AUTHORS   Gerhard,D.S., Wagner,L., Feingold,E.A., Shenmen,C.M., Grouse,L.H.,
            Schuler,G., Klein,S.L., Old,S., Rasooly,R., Good,P., Guyer,M.,
            Peck,A.M., Derge,J.G., Lipman,D., Collins,F.S., Jang,W., Sherry,S.,
            Feolo,M., Misquitta,L., Lee,E., Rotmistrovsky,K., Greenhut,S.F.,
            Schaefer,C.F., Buetow,K., Bonner,T.I., Haussler,D., Kent,J.,
            Kiekhaus,M., Furey,T., Brent,M., Prange,C., Schreiber,K.,
            Shapiro,N., Bhat,N.K., Hopkins,R.F., Hsie,F., Driscoll,T.,
            Soares,M.B., Casavant,T.L., Scheetz,T.E., Brown-stein,M.J.,
            Usdin,T.B., Toshiyuki,S., Carninci,P., Piao,Y., Dudekula,D.B.,
            Ko,M.S., Kawakami,K., Suzuki,Y., Sugano,S., Gruber,C.E.,
            Smith,M.R., Simmons,B., Moore,T., Waterman,R., Johnson,S.L.,
            Ruan,Y., Wei,C.L., Mathavan,S., Gunaratne,P.H., Wu,J., Garcia,A.M.,
            Hulyk,S.W., Fuh,E., Yuan,Y., Sneed,A., Kowis,C., Hodgson,A.,
            Muzny,D.M., McPherson,J., Gibbs,R.A., Fahey,J., Helton,E.,
            Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M.,
            Madari,A., Young,A.C., Wetherby,K.D., Granite,S.J., Kwong,P.N.,
            Brinkley,C.P., Pearson,R.L., Bouffard,G.G., Blakesly,R.W.,
            Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J.,
            Myers,R.M., Butterfield,Y.S., Griffith,M., Griffith,O.L.,
            Krzywinski,M.I., Liao,N., Morin,R., Palmquist,D., Petrescu,A.S.,
            Skalska,U., Smailus,D.E., Stott,J.M., Schnerch,A., Schein,J.E.,
            Jones,S.J., Holt,R.A., Baross,A., Marra,M.A., Clifton,S.,
            Makowski,K.A., Bosak,S. and Malek,J.
  CONSRTM   MGC Project Team
  TITLE     The status, quality, and expansion of the NIH full-length cDNA
            project: the Mammalian Gene Collection (MGC)
  JOURNAL   Genome Res 14 (10B), 2121-2127 (2004)
   PUBMED   15489334
  REMARK    Erratum:[Genome Res. 2006 Jun;16(6):804. Morrin, Ryan [corrected to
            Morin, Ryan]]
REFERENCE   2  (bases 1 to 2890)
  AUTHORS   Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
            Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
            Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
            Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
            Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
            Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
            Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
            Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
            Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
            McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
            Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
            Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
            Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
            Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
            Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
            Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
            Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
            Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
  CONSRTM   Mammalian Gene Collection Program Team
  TITLE     Generation and initial analysis of more than 15,000 full-length
            human and mouse cDNA sequences
  JOURNAL   Proc Natl Acad Sci U S A 99 (26), 16899-16903 (2002)
   PUBMED   12477932
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from BC081934.1.
            
            On Feb 11, 2005 this sequence version replaced XM_225249.2.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC081934.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760384
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..2890
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="17"
                     /map="17p12"
     gene            1..2890
                     /gene="Cage1"
                     /gene_synonym="Ctag3"
                     /note="cancer antigen 1"
                     /db_xref="GeneID:306872"
                     /db_xref="RGD:1306102"
     exon            1..136
                     /gene="Cage1"
                     /gene_synonym="Ctag3"
                     /inference="alignment:Splign:2.1.0"
     exon            137..388
                     /gene="Cage1"
                     /gene_synonym="Ctag3"
                     /inference="alignment:Splign:2.1.0"
     CDS             287..2830
                     /gene="Cage1"
                     /gene_synonym="Ctag3"
                     /note="CAGE-1; CT3 homolog; cancer/testis antigen 3
                     homolog"
                     /codon_start=1
                     /product="cancer-associated gene 1 protein homolog"
                     /protein_id="NP_001012052.1"
                     /db_xref="GeneID:306872"
                     /db_xref="RGD:1306102"
                     /translation="MSETETMNVNGPQDFYSDSPFCLEASFSSSDLLQNETKNVKRGN
                     ESVHMSSEDILSTEGSLLGDINLGNYPERIQNQPANTRVSSSRQFEPICKFHWIDAFN
                     DDSSVPDLTRAFSYSEEKPELQSQVYNDPADASQKPDPLKEESLMESSTSENKDELVH
                     EPVRKSRSLCLNHYRGKTRPLTETPLVRSVVVDVALNNNQPESFLGKENVCRNGENLS
                     DSENCFDQLDLRAIYKAGKPEVSSKGIQNSGEFSDMSVGPQEEVTEDGLDSLAITSPW
                     SPAGIFKGRRSQDDFQMPDGELDFESLEPLEEDMALNEALQKLKQTNKKQELQIQDLH
                     GRNLTLESRVQELQTKVSKQHVLLDIINKLKVNVEELIDDKYNVILEKNDINKKLQDL
                     QETSANTKKHLQESKKDQESLQLQVKKIKVHYVRLQERYIAEIQQKNRSVTQCLEIEK
                     TLSKKDEELQRLQRHKGELEKATSSALDLLKREKEIREQEFLSFQEEFQRREKENLKE
                     RRKLKSRVEKLVAQVKSLLFTCESERAQTTALQQQVDALRLENLELRQQAAKREAQAC
                     TPSFEIIQPKEKLEEVVEPDVTQDTKGTHCNLFLNCSSCKENPELPSMKRTSPLTSRL
                     HSLLALTIGLLTCQDLAIPDTELRQESKKANDIMLQRLKDCQLRKKDLDKELLKHRNR
                     IATLKELIANEKALQDHTMEITDFDTEEVKNASEAPVLLTVKLDKYHSLNEELDFLIT
                     KLGDLLESKEDHYSRLIEENDKYRRHVGSLINKVTSYEEIIKCADQRLEISHSQIAHL
                     EERNRHLEDLIRMPREKARGLRPRLDNHPKSMTLISHLEGHHKECSISM"
     exon            389..476
                     /gene="Cage1"
                     /gene_synonym="Ctag3"
                     /inference="alignment:Splign:2.1.0"
     exon            477..997
                     /gene="Cage1"
                     /gene_synonym="Ctag3"
                     /inference="alignment:Splign:2.1.0"
     exon            998..2053
                     /gene="Cage1"
                     /gene_synonym="Ctag3"
                     /inference="alignment:Splign:2.1.0"
     exon            2054..2200
                     /gene="Cage1"
                     /gene_synonym="Ctag3"
                     /inference="alignment:Splign:2.1.0"
     exon            2201..2311
                     /gene="Cage1"
                     /gene_synonym="Ctag3"
                     /inference="alignment:Splign:2.1.0"
     exon            2312..2392
                     /gene="Cage1"
                     /gene_synonym="Ctag3"
                     /inference="alignment:Splign:2.1.0"
     exon            2393..2500
                     /gene="Cage1"
                     /gene_synonym="Ctag3"
                     /inference="alignment:Splign:2.1.0"
     exon            2501..2605
                     /gene="Cage1"
                     /gene_synonym="Ctag3"
                     /inference="alignment:Splign:2.1.0"
     exon            2606..2676
                     /gene="Cage1"
                     /gene_synonym="Ctag3"
                     /inference="alignment:Splign:2.1.0"
     exon            2677..2745
                     /gene="Cage1"
                     /gene_synonym="Ctag3"
                     /inference="alignment:Splign:2.1.0"
     exon            2746..2867
                     /gene="Cage1"
                     /gene_synonym="Ctag3"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 tcggtgggga cggttggaag gtgttctccc tcccgcagag tcggtgggct gggaggaaac
       61 ccggaatcct tagcctgagt cacagaagct ctatggatca tggaagtgag cacacttttg
      121 ctctctagaa acgttgaggc cttccatcat ttagtggtta gaaacacgga ttctcagaag
      181 ttttggtcat catccctggc agcacaaaac aaaaaggaaa gtgattgcct tcatcttgag
      241 atcctgtacg tttcgaagtg gacacttcca tgaaaattta gaaagtatgt cagaaacaga
      301 aacaatgaat gttaatggtc ctcaagactt ctactcagac tcacccttct gcttggaagc
      361 cagcttctcc tcctcagacc tgcttcagaa cgaaacaaag aatgtaaaaa ggggaaatga
      421 gtctgtacac atgtcctctg aagatattct tagcacagaa ggcagtttgt taggtgacat
      481 caaccttggg aattacccag agaggataca gaatcaacca gctaacacta gagtgtcttc
      541 ctcgagacaa tttgaaccca tttgcaaatt tcactggata gatgcattta atgatgacag
      601 ctcagttccg gacctgacca gggcattttc ttattcggag gagaagcctg agctgcagag
      661 ccaggtgtac aatgatccag cggatgccag ccagaagcca gatccgctta aggaagaaag
      721 tttgatggaa agtagcactt ctgaaaataa agacgaactt gttcatgaac ctgtgaggaa
      781 gtctagaagt ctatgtctaa accactacag aggaaaaacg cggccactca cagaaacgcc
      841 attggtgaga agtgtggttg tagatgttgc cctcaacaac aatcagcctg aaagctttct
      901 gggtaaagaa aatgtctgta gaaatggtga aaatttgtct gacagtgaga attgctttga
      961 ccagcttgac ttgagagcta tttacaaagc tgggaagcct gaagtttctt caaaaggaat
     1021 acagaattct ggggagtttt ctgacatgtc cgttggtccc caggaggaag tcacagaaga
     1081 tggtttagac agcctagcca ttacctcacc atggtctcca gcaggcatct tcaagggtcg
     1141 tagatctcag gatgacttcc agatgcctga tggggagcta gactttgaaa gcttggagcc
     1201 tctggaagag gacatggctt taaatgaagc tttgcagaaa ctgaagcaga ctaacaaaaa
     1261 acaggaactg cagattcaag acctccatgg taggaacttg accttagaga gcagggttca
     1321 ggaactacag acaaaggtca gcaaacagca cgtgttgctt gacatcataa ataaactgaa
     1381 ggtgaacgtt gaggagttga tcgatgacaa atacaacgta atcctagaga agaacgacat
     1441 caacaagaaa cttcaggatc tgcaggagac ttcagctaac accaaaaagc accttcagga
     1501 atccaagaaa gaccaggaga gcctacagct ccaggtgaag aagatcaagg tccactacgt
     1561 ccgcttacaa gaaaggtaca tcgctgagat acagcagaaa aacagatcgg tcactcagtg
     1621 cctggagata gagaagacct taagcaagaa ggacgaggag ctccagaggc tgcagcgcca
     1681 caaaggagag ctggagaagg ccaccagttc tgccctggac ttgttgaaga gggagaagga
     1741 gatccgggaa caagagttct tgtcttttca ggaggaattc cagagacggg aaaaggagaa
     1801 cctgaaagaa aggcggaaat tgaagtcaag agttgagaag ctggtcgctc aagtgaaaag
     1861 cttgctgttc acctgtgaga gcgagagggc tcaaaccaca gcgctccagc agcaggtcga
     1921 tgcgctgagg ctggagaact tagaactccg gcagcaggct gcaaagaggg aggcacaagc
     1981 ttgcaccccc agctttgaga ttattcagcc aaaggagaag ctggaggaag tggtggagcc
     2041 ggacgtcacc caggatacaa aggggacaca ttgtaatttg ttcctgaatt gctcgtcttg
     2101 taaagaaaac ccggagctcc catctatgaa gagaacttct ccactgacct ctagacttca
     2161 cagtcttttg gccctgacaa taggacttct cacatgtcag gacctcgcca ttcctgacac
     2221 cgagcttcgc caggagagta agaaagctaa tgacataatg ctgcaaagac tgaaggactg
     2281 ccagcttaga aagaaagatc tagataaaga gttattgaaa catagaaaca gaattgcaac
     2341 tctcaaagag ttaatcgcta atgagaaggc tcttcaagac cacactatgg agatcacaga
     2401 ttttgataca gaagaggtca agaatgccag cgaagcacct gtgctactga cagtcaaact
     2461 ggataaatac cacagtctga acgaggagct tgatttcttg atcaccaagc tgggggacct
     2521 tctggagagc aaagaagacc actacagcag gctcatcgag gagaatgaca agtaccgaag
     2581 acacgtaggc agcctgataa acaaggtaac gtcatatgaa gaaattatca aatgtgctga
     2641 tcaaagactt gagatatccc attcccagat tgcacatttg gaagaaagaa atagacattt
     2701 ggaagattta atcagaatgc ccagagagaa agccagaggg ctaagaccaa gattagataa
     2761 tcacccaaag tccatgacct tgataagtca tcttgagggc caccataaag aatgttctat
     2821 ttccatgtga actgacaata gtacatgatt aaatattcat tcctgaaaaa aaaaaaaaaa
     2881 aaaaaaaaaa
//
