LOCUS       NM_080694               2553 bp    mRNA    linear   ROD 31-MAR-2024
DEFINITION  Rattus norvegicus calcium voltage-gated channel auxiliary subunit
            gamma 6 (Cacng6), mRNA.
ACCESSION   NM_080694
VERSION     NM_080694.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2553)
  AUTHORS   Yang,L., Katchman,A., Morrow,J.P., Doshi,D. and Marx,S.O.
  TITLE     Cardiac L-type calcium channel (Cav1.2) associates with gamma
            subunits
  JOURNAL   FASEB J 25 (3), 928-936 (2011)
   PUBMED   21127204
REFERENCE   2  (bases 1 to 2553)
  AUTHORS   Lee,J.S., Kim,J.H., Bae,J.S., Kim,J.Y., Park,T.J., Pasaje,C.F.,
            Park,B.L., Cheong,H.S., Uh,S.T., Park,J.S., Jang,A.S., Kim,M.K.,
            Choi,I.S., Park,C.S. and Shin,H.D.
  TITLE     Association of CACNG6 polymorphisms with aspirin-intolerance
            asthmatics in a Korean population
  JOURNAL   BMC Med Genet 11, 138 (2010)
   PUBMED   20860846
  REMARK    Publication Status: Online-Only
REFERENCE   3  (bases 1 to 2553)
  AUTHORS   Chu,P.J., Robertson,H.M. and Best,P.M.
  TITLE     Calcium channel gamma subunits provide insights into the evolution
            of this gene family
  JOURNAL   Gene 280 (1-2), 37-48 (2001)
   PUBMED   11738816
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000001.1.
            
            On Oct 7, 2022 this sequence version replaced NM_080694.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26643296.608.1, SRR26643289.815.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760386, SAMEA5760475
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-1379              JAXUCZ010000001.1  74661375-74662753   c
            1380-1454           JAXUCZ010000001.1  74656073-74656147   c
            1455-1592           JAXUCZ010000001.1  74654321-74654458   c
            1593-2553           JAXUCZ010000001.1  74648342-74649302   c
FEATURES             Location/Qualifiers
     source          1..2553
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /map="1q12"
     gene            1..2553
                     /gene="Cacng6"
                     /note="calcium voltage-gated channel auxiliary subunit
                     gamma 6"
                     /db_xref="GeneID:140727"
                     /db_xref="RGD:628806"
     exon            1..1379
                     /gene="Cacng6"
                     /inference="alignment:Splign:2.1.0"
     CDS             1049..1831
                     /gene="Cacng6"
                     /note="neuronal voltage-gated calcium channel gamma-6
                     subunit; calcium channel, voltage-dependent, gamma subunit
                     6"
                     /codon_start=1
                     /product="voltage-dependent calcium channel gamma-6
                     subunit"
                     /protein_id="NP_542425.1"
                     /db_xref="GeneID:140727"
                     /db_xref="RGD:628806"
                     /translation="MMWSNFFMQEEDRRRTAVGRRRAQEQQNLGLTPEREGKIKLGLL
                     VAIVGATLAVLAVGTEFWVELNTYKTNGSAVCEAAHLGLWKVCIKRLWQADVPAGRET
                     CGPAELPGEANCTYFKFFTTGENAHIFQRTTKKEVNLAAAVIAVLGLTAMALGCLCVI
                     MVLSKGAEFLLRLGAVCFGLSGLLLFVSLEVFRHSVRALLQGVNPETPPAPRLAYEYS
                     WSLGCGVGAGLILLLGGVCFLLLTLPSWPWRSLCPKRGGPTA"
     exon            1380..1454
                     /gene="Cacng6"
                     /inference="alignment:Splign:2.1.0"
     exon            1455..1592
                     /gene="Cacng6"
                     /inference="alignment:Splign:2.1.0"
     exon            1593..2553
                     /gene="Cacng6"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gactgggtag tggcgagcaa agccggacgc ttcggaggca tcgcggagct ggggccgtcg
       61 cggcgcagag gcaggagagc tcaagggacc cgtgccgggg agacccgggt gggaagccca
      121 aagggagcgc gggaccccga gctgagtctg gagcgatcct ggccgagcag gccttgggag
      181 cctgggggag ggggagccga gtgactgcag acagactgac tgagagtccc tttccaagcc
      241 ctgtgtcccc cagggtattt attttgccct ggttttctga gcctgagtgt ggaccacagt
      301 gccttgatct aagccctgtc ctgactacag gttttcctcc tgggccctca gagtggcccc
      361 cggcctcttt ttctggacct cactgtgatt ctcagccact gtgggagacc tggactcttt
      421 tctgagcagt tcctggcttg cctatactcc ctcgaattcc attggggccc cgaattaact
      481 gtgaatactg gaggattctc cttgcctttc agacttggag agatatcaaa ctttacctgt
      541 gaaatcccaa ttctaactct tgtattgccc aaaagtgtac tgatttctcc tttctcaaag
      601 tctgagcctg aagaaactta aactatctcc tcaaacacat gaaagacctc agcttccctc
      661 tttgggaaaa ctctgaggct tactggagac cccatcagca gcctatagag actggacaag
      721 ttttccccct gggttcttca gtcttcctct tgggtccgta aacttcagag tagcctagct
      781 tttttcctag gcctcacctg tgccaacttc atgtgcacaa gccctggcgg catccttagg
      841 ccaagactat agttagtttc tcttctcagg ggcagaggcc tccactcttg catttcgggt
      901 tcagcttttt ctcattccca atctgattga cactgaggcc actacttcct ttgaaagtgc
      961 aggccctgct ccctgcccct taagacccct ctgcacgggt ctttctgact ccttgaagct
     1021 ctcctgagcc ccagccgatc ccatcatcat gatgtggtct aacttcttca tgcaagagga
     1081 agaccgtcgt cggacggctg tgggccggcg tcgtgcccaa gaacagcaga atctcggctt
     1141 gactccggag cgagagggca agatcaagct ggggttgctg gtggctatcg tgggtgccac
     1201 tctggctgtg ctagctgtgg gcaccgagtt ctgggtggaa ctcaatacat acaagaccaa
     1261 cggcagcgcc gtctgtgagg ccgcccattt ggggctgtgg aaggtgtgca tcaagcgact
     1321 gtggcaggcg gatgtacccg cgggcaggga gacctgtggc ccagctgagc tgccaggaga
     1381 agcaaactgc acctacttca agttcttcac cacgggggaa aatgcgcaca tcttccagag
     1441 aaccaccaag aaagaggtaa acctggcagc tgctgtgata gctgtgctgg gcctgacagc
     1501 catggccttg ggctgcctct gtgtcatcat ggtgctcagt aaaggtgcag agttcctgct
     1561 ccgcttggga gctgtctgct ttggcctctc aggcctgctg ctctttgtca gcctggaggt
     1621 gttccggcat tccgtcagag ccctgctgca gggggtcaac cctgagaccc ctccagctcc
     1681 acgcctggcc tatgagtatt cctggtccct aggctgtggt gtgggcgctg gtctaatcct
     1741 gctgctgggg ggagtctgtt tcctcctgct caccctgcct tcctggccct ggaggtcact
     1801 gtgccccaag cggggtggcc caactgccta gagcgctggc ctgctttctg aaggcatctg
     1861 ccaaccctgc ctcagtttcc agctttctcc tcaggacttt tcatctctct tctagagaaa
     1921 ctgtttttcc cactctggtg ggctcatttc acaaaatgtc ttggtccctc atcttctctc
     1981 tgtaaataat gcctttgggg gtgtggggaa tggctcagta agtaaatcgc ttgctgagca
     2041 agcttgagga cttggaattt gagtccccag aactcacttt aaaagccagc acagtagtcc
     2101 atgtctataa ttccaatgtt gggaaggcag agattagagg aaccttggag ctcactgacc
     2161 agttagccta gtcaattatt gaggtcaggt tcagtgagag accctgtctc aaacaataag
     2221 gcaggagcaa caaaggaaga tgcctgatgc taaactctga cacacacaca cacacacaca
     2281 cacacacaca cacacacaca cacacaccac agtagttgaa tttgggttgc ttgaggtagg
     2341 atgggaagtt ccctggggaa acttctaggg atccgatggg agatggatgg gtgaaagggc
     2401 tggggtccca gaaggatttg ggagctttct ttccaattcc tcgctgatcc acggaatgga
     2461 gagacgtcct acaactgctg gatggaacaa ggaagagccc gggtccaact tcactgtcat
     2521 cagacttggg attaaaggtt tgaagatgtg aca
//
