LOCUS       XM_039095297            4513 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus calcium voltage-gated channel
            auxiliary subunit beta 2 (Cacnb2), transcript variant X5, mRNA.
ACCESSION   XM_039095297
VERSION     XM_039095297.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051352.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039095297.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4513
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="17"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..4513
                     /gene="Cacnb2"
                     /gene_synonym="Cacnlb2"
                     /note="calcium voltage-gated channel auxiliary subunit
                     beta 2; Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 35 ESTs, 4 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 31 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116600"
                     /db_xref="RGD:67385"
     CDS             31..1884
                     /gene="Cacnb2"
                     /gene_synonym="Cacnlb2"
                     /codon_start=1
                     /product="voltage-dependent L-type calcium channel subunit
                     beta-2 isoform X5"
                     /protein_id="XP_038951225.1"
                     /db_xref="GeneID:116600"
                     /db_xref="RGD:67385"
                     /translation="MVQSDTSKSPPIAAVAQESQMELLESAAPAGALGAQSYGKGARR
                     KNRFKGSDGSTSSDTTSNSFVRQGSADSYTSRPSDSDVSLEEDREAVRREAERQAQAQ
                     LEKAKTKPVAFAVRTNVRYSAAQEDDVPVPGMAISFEAKDFLHVKEKFNNDWWIGRLV
                     KEGCEIGFIPSPVKLENMRLQHEQRAKQGKFYSSKSGGNSSSSLGDIVPSSRKSTPPS
                     SAKQKQKSTEHTPPYDVVPSMRPVVLVGPSLKGYEVTDMMQKALFDFLKHRFEGRISI
                     TRVTADISLAKRSVLNNPSKHAIIERSNTRSSLAEVQSEIERIFELARTLQLVVLDAD
                     TINHPAQLSKTSLAPIIVYVKISSPKVLQRLIKSRGKSQAKHLNVQMVAADKLAQCPP
                     QESFDVILDENQLEDACEHLADYLEAYWKATHPPSSNLPNPLLSRTLATSTLPLSPTL
                     ASNSQGSQGDQRTDRSAPRSASQAEEEPCLEPVKKSQHRSSSATHQNHRSGTGRGLSR
                     QETFDSETQESRDSAYVEPKEDYSHEHVDRYVPHREHNHREESHSSNGHRHREPRHRT
                     RDMGRDQDHNECSKQRSRHKSKDRYCDKEGEVISKRRSEAGEWNRDVYIRQ"
ORIGIN      
        1 acccgcaacc ttggagtcga cttttcgccg atggtccaaa gcgacacgtc caagtcgcct
       61 cccatagcgg cggtggcgca ggagagccag atggagctgc tggaaagcgc ggctcccgcg
      121 ggggcgctcg gagcacagtc atatggaaaa ggagccagga ggaaaaacag atttaaaggc
      181 tcggatggca gcacgtcctc agacactacc tccaacagct ttgtccggca gggttcggca
      241 gactcctaca ccagccgccc atcggattca gatgtgtctt tggaagagga ccgggaggca
      301 gtccgtagag aagctgagcg gcaggcccag gcccagttgg aaaaagcaaa gacaaaacct
      361 gttgcatttg cagttcggac caatgtcagg tacagcgcag cccaggagga tgacgtcccg
      421 gtgcccggca tggccatctc attcgaggca aaagattttc tgcatgttaa ggaaaaattt
      481 aataatgact ggtggatagg acggctggtt aaagaaggct gtgaaatcgg atttattcca
      541 agcccggtca aactagagaa catgaggcta cagcatgaac agagagccaa gcaagggaaa
      601 ttctactcca gtaaatcagg aggaaattca tcatccagtt tgggtgacat agtacccagt
      661 tccagaaaat cgacacctcc atcatctgct aagcagaagc agaagtcgac agagcacact
      721 cctccttacg atgtggtacc atccatgaga ccagtggtgt tggtgggccc ctccctgaag
      781 gggtatgagg tcacagatat gatgcaaaaa gcactgtttg attttctaaa acacagattt
      841 gaaggacgga tatccatcac aagagttact gctgacatct ccctggccaa acgctcagta
      901 ttaaacaacc ccagtaagca cgcaataata gaaagatcca acacaaggtc gagcttagcg
      961 gaagttcaga gtgaaattga aaggattttt gaacttgcaa gaacactgca attggtagtc
     1021 cttgacgcgg atacaattaa tcacccagct caactcagta agacctctct ggcccctatc
     1081 atagtgtatg taaagatttc ttctcctaag gttttacaaa ggttaataaa atctcgagga
     1141 aagtctcaag caaagcacct caatgtccag atggtggcag ccgataaact ggcccagtgt
     1201 cccccgcagg agtcatttga tgtgatcttg gatgagaacc aacttgagga tgcttgtgag
     1261 catctcgccg actatctgga ggcgtactgg aaggccaccc accctcccag cagtaacctc
     1321 cccaaccctc tccttagccg gactttagcc acctcaactt tacctctgag ccccaccctt
     1381 gcctctaatt cacagggttc tcaaggtgat cagaggactg atcgctctgc tccccggtct
     1441 gcttcccaag ctgaagaaga accttgtctg gaaccagtca aaaaatccca acaccgttct
     1501 tcctcagcca cacaccaaaa ccaccgcagt gggacaggtc gaggcctctc taggcaagaa
     1561 acgtttgact ctgaaaccca agagagccga gactctgcct acgtggagcc aaaggaagat
     1621 tattcacatg aacatgtgga ccgctatgtt ccacaccgtg aacataacca cagagaggag
     1681 agccacagca gcaatggcca caggcacagg gagcctcgcc accgcactag ggacatgggt
     1741 cgagaccagg accacaatga gtgcagcaaa caacgaagcc ggcataaatc taaggatcgc
     1801 tactgtgaca aggaagggga agtaatatcc aaaagaagga gtgaggctgg cgagtggaac
     1861 agggatgtat acatccgcca atgaccgtgc gtgtctctgc ccccaagtct tgtgtaacat
     1921 catccttaag caaaatcttt ggggctccat tgcaaccatc tgtgatctgt cttgtatatt
     1981 ttgtattgct gttgcttgaa tagcaatagc atgcaatcaa gtattactat acattctttt
     2041 gtaagtacca cagaaattgg cctagtacaa gctgcagtcc tcagtctata tcctgaactc
     2101 ttcaaaagct gtttggggta gctgccacct gaacagagtg gcttcagaaa tgtagttaat
     2161 gtattcagtg agccagatgc agcacagata acaagtggaa ttcctccata tttttaatac
     2221 ccagatacct gacctgtcat tctttcatgg accactgttt cttgcttgta cctctggctg
     2281 actaaatttg gggacagatt cagtcttgcc ttacacaaag gggattataa agttagaatc
     2341 tattttctat gtactagtac tgtgtactgt gtagacagtt tgtaaatgtt atttctgcaa
     2401 acaccttatt ataattatat atataatata tatatatatc agtttgatca tacaatttta
     2461 gggtcttaat gccaagtcag cagatttgct ttatgaatca cagggactag aaatgcccac
     2521 attcaggaaa tttctaatat tgtctagact cctctcccta ttctaagaga gagcctgtat
     2581 atagtgtaaa tacgtgtgat tgcttgactt gaggtttgat ttctgaatgt aatcccatcc
     2641 ttgtaagttt ttcattttaa ccataaatta tggtaaatgt aaccaactcc agaggttttt
     2701 ctactccata cagtccacac tgattgtgac aaacacgttc ttagcagcta gtgtctgtgg
     2761 tagtcactgc actggagtat ccaagcggag cccaccatgt gcacatgcgt gtgtgagtgt
     2821 gagagtgagt ggctgagaca aagtggaatg cagaagacta atgcggaaac cagaggctga
     2881 tggacctggc tttgcattta actgttgtat gttgctttcg aacccactga gcagccaggg
     2941 aatgtgagga agcttgctgc caaaggaact agggaagcac ttagtggctg actccctgct
     3001 tttgcccctg aagagagaaa acatgggcgt cttgtactgt gagtgttcca ctggaaatgg
     3061 acaatctttg tgtgtcagag tattttgttt tagtaagaaa tgtttacaca gcttgtgcaa
     3121 ttatttcgta gggaaataaa tttttataac ttgtcccact tcactttcta aacgtgccta
     3181 ttgctcctct tgttcatcct cagccaccgc tcttcttccc ctgcaccaag ctgtgcagct
     3241 gcactgtcgg aatctagaag tgcttcttag aaccaaagtt cctgctaaat ctttagaagt
     3301 tatcagggca aaaatggaat gacttgaagc aaaaaaagtt gaaacatttt cttttacgag
     3361 acatctctaa gggagaacgt agaagacact tttttcacac ctcaatttgc tttcgttaag
     3421 aagcttaaac tgctcttagc cgaggctatc caatctctgt ctctcaagag cccagtgctg
     3481 atggagaggt aagactgtat gagctccaca cgcccctagc attcgaagcc ttcgcaggaa
     3541 aatgtctatc tgtgattacc caaccagatc agtatatact aaaacaagta agttacaata
     3601 aatatatttt tgttttgttt ccgggttact tcacattctt ctgaaatatt cttaggcatt
     3661 cgtatgaaaa gcagtttgac atttactact ttatactata cccaagaaaa ctcaagcatt
     3721 taaaacgtga gttgcatatg tatttgacca gtgggttacc tgcttagaga atgaaatttt
     3781 cctcagaaca gcactccacg cttacagaaa tacagacgat acccagcaat ctctgaccca
     3841 aactgagagc gtacgcatca cagacagact ttctacagtg atctactcct ttccggtgtg
     3901 tgtgtttcat ccagaggaat ggctgagaca ctcagcctca tgatggatgg tgtttctctt
     3961 acctgcagtt accaggcttc cctttcagac cagttctaat gctgtccgtc catttgctta
     4021 atgcgagcat gtgcgtgcac atcacagcat cccccctact ctgccgaaag ctctgacata
     4081 ggcacctgtg tgtgaaagct acatacttgg gctcccaagg aacatggctg acttcctgac
     4141 taatgggatg taacactgct cttttcatga gcaaaagttt aatcttacct gactcacttg
     4201 tagaatcctg attttttttt tcctgtagtc aagctaggaa acgctggaaa tgtagttaac
     4261 agtgttatac ttgtgtcagt cacttgaatt tctcctctgc tttctcaact gctcatttac
     4321 ttactgttac aaaaaaaggt gctgctaaaa gtaggacgtc ttcagtcaca ctgtactgca
     4381 gacaatgcca cactcaactt gtctgctctg catccctgtt aacaaacact ccctgtcacg
     4441 acactgaact gtttgatgaa cttggtttaa agtaattcat ggaaacaaat aaagagctgg
     4501 cttctgcact gtt
//
