LOCUS       XM_039094435            4850 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus calcium voltage-gated channel subunit
            alpha1 D (Cacna1d), transcript variant X20, mRNA.
ACCESSION   XM_039094435
VERSION     XM_039094435.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051351.1) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4850
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="16"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..4850
                     /gene="Cacna1d"
                     /note="calcium voltage-gated channel subunit alpha1 D;
                     Derived by automated computational analysis using gene
                     prediction method: Gnomon. Supporting evidence includes
                     similarity to: 2 mRNAs, 5 ESTs, 1 Protein, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 14 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:29716"
                     /db_xref="RGD:70973"
     CDS             439..4506
                     /gene="Cacna1d"
                     /codon_start=1
                     /product="voltage-dependent L-type calcium channel subunit
                     alpha-1D isoform X17"
                     /protein_id="XP_038950363.1"
                     /db_xref="GeneID:29716"
                     /db_xref="RGD:70973"
                     /translation="MMMMMMMKKMQHQRQQQEDHANEANYARGTRLPISGEGPTSQPN
                     SSKQTVLSWQAAIDAARQAKAAQTMSTSAPPPVGSLSQRKRQQYAKSKKQGNSSNSRP
                     ARALFCLSLNNPIRRACISIVDWKPFDIFILLAIFANCVALAIYIPFPEDDSNSTNHN
                     LEKVEYAFLIIFTVETFLKIIAYGLLLHPNAYVRNGWNLLDFVIVIVGLFSVILEQLT
                     KETEGGNHSSGKSGGFDVKALRAFRVLRPLRLVSGVPSLQVVLNSIIKAMVPLLHIAL
                     LVLFVIIIYAIIGLELFIGKMHKTCFFADSDIVAEEDPAPCAFSGNGRQCAANGTECR
                     SGWVGPNGGITNFDNFAFAMLTVFQCITMEGWTDVLYWVNDAIGWEWPWVYFVSLIIL
                     GSFFVLNLVLGVLSGEFSKEREKAKARGDFQKLREKQQLEEDLKGYLDWITQAEDIDP
                     ENEEEGGEEGKRNTSMPTSETESVNTENVSGEGETQGCCGSLWCWWKRRGAAKTGPSG
                     CRRWGQAISKSKLSRRWRRWNRFNRRRCRAAVKSVTFYWLVIVLVFLNTLTISSEHYN
                     QPDWLTQIQDIANKVLLALFTCEMLVKMYSLGLQAYFVSLFNRFDCFVVCGGITETIL
                     VELELMSPLGVSVFRCVRLLRIFKVTRHWTSLSNLVASLLNSMKSIASLLLLLFLFII
                     IFSLLGMQLFGGKFNFDETQTKRSTFDNFPQALLTVFQILTGEDWNAVMYDGIMAYGG
                     PSSSGMIVCIYFIILFICGNYILLNVFLAIAVDNLADAESLNTAQKEEAEEKERKKIA
                     RKESLENKKNNKPEVNQIANSDNKVTIDDYQEEAEDKDPYPPCDVPVGEEEEEEEEDE
                     PEVPAGPRPRRISELNMKEKIAPIPEGSAFFILSKTNPIRVGCHKLINHHIFTNLILV
                     FIMLSSAALAAEDPIRSHSFRNTILGYFDYAFTAIFTVEILLKMTTFGAFLHKGAFCR
                     NYFNLLDMLVVGVSLVSFGIQSSAISVVKILRVLRVLRPLRAINRAKGLKHVVQCVFV
                     AIRTIGNIMIVTTLLQFMFACIGVQLFKGKFYRCTDEAKSNPEECRGLFILYKDGDVD
                     SPVVRERIWQNSDFNFDNVLSAMMALFTVSTFEGWPALLYKAIDSNGENVGPVYNYRV
                     EISIFFIIYIIIVAFFMMNIFVGFVIVTFQEQGEKEYKNCELDKNQRQCVEYALKARP
                     LRRYIPKNPYQYKFWYVVNSSPFEYMMFVLIMLNTLCLAMQHYEQSKMFNDAMDILNM
                     VFTGVFTVEMVLKVIAFKPKHYFTDAWNTFDALIVVGSVVDIAITEVNPSDSENIPLP
                     TATPGVRSGTGPRGWAFSLTLFDHVEFSTGVLYSP"
ORIGIN      
        1 gcgggcgggc ggacgggcgg catggggggc gcgtcgagcg gccccggcgg ccgggcgggc
       61 accaccgcgg tgtccctccg ctagaggagg ggaccaagcc aattctcctt tgcagcaaaa
      121 aaagagaaaa aagaaaaaaa agaaaaattt acatgtatat attactaaga taatatatac
      181 atctgatttt attttttaca aaaagtttat tttgctccat ttttcaaaaa aagaaggagc
      241 gtgggtggca ggcggttttt ataaattatt cttatttttg attatttgtc tctgtccttc
      301 cccaccccct gctgaagcga aaataagggc agggaccgcg gctcctacct atcagtaacc
      361 tcccataccc gttcctcccc ctccctaacg ctgagcatag tgccctgcac acagtaggcg
      421 ctcaataaat gttcgtggat gatgatgatg atgatgatga aaaaaatgca gcatcaacgg
      481 cagcagcaag aggaccacgc gaacgaggca aactatgcaa gaggcaccag actccctatt
      541 tctggtgaag gaccaacttc tcagccgaac agctccaagc aaaccgtcct gtcttggcaa
      601 gctgcaattg atgctgctag acaggccaag gccgcccaga ccatgagcac gtctgcaccc
      661 ccacctgtag gatctctctc ccaaagaaaa cgtcagcaat acgccaagag caaaaaacag
      721 ggtaactcgt ctaacagccg acctgcccgt gccctcttct gtttatccct caataacccc
      781 atccgaagag cctgcattag tatagtggat tggaaaccat ttgacatatt tatattattg
      841 gctatttttg ccaattgtgt ggccttagct atttacatcc cgttccctga agatgattct
      901 aattcaacaa atcataactt ggaaaaagta gaatatgcct tcctgattat ttttacagtg
      961 gagacatttc tgaagattat agcgtacgga ctgctgctgc atcctaatgc ttacgttagg
     1021 aacggatgga acttactgga ttttgttata gtaatagtag gattgtttag tgtaattttg
     1081 gaacaattaa ccaaagaaac agaaggcggg aaccactcta gtggcaaatc aggaggcttt
     1141 gatgtcaaag ccctccgtgc cttccgagtg ttaagaccgc ttcgacttgt atcaggagtg
     1201 cccagtttac aagttgttct gaactccatt ataaaagcca tggtccccct cctccacata
     1261 gcccttttgg tgttattcgt aattatcatc tatgcgatta tagggttgga actttttatt
     1321 ggaaaaatgc acaaaacctg tttttttgct gactcagata tagtagctga agaggaccca
     1381 gctccatgcg cgttctcagg gaatggacgc cagtgtgccg ccaatggcac ggaatgtagg
     1441 agcggctggg tcggccccaa tggaggcatc actaattttg acaactttgc ctttgccatg
     1501 ctcactgtgt tccagtgcat caccatggag ggctggacag atgtgctcta ctgggttaat
     1561 gatgcgatag gatgggagtg gccatgggtg tattttgtta gtctgatcat ccttggctca
     1621 tttttcgtcc ttaacctggt tcttggtgtc cttagtggag aattctcaaa ggaaagagag
     1681 aaggctaaag cacgtggaga tttccagaag cttcgggaga agcagcagct ggaagaggat
     1741 ctcaagggct acttggactg gatcacccag gcagaagaca tagatcctga gaatgaagag
     1801 gagggtggag aggagggcaa acgaaacact agcatgccca ccagtgagac cgaatctgtg
     1861 aacacagaga acgtaagtgg tgaaggcgag acccagggat gctgtggaag tctctggtgc
     1921 tggtggaaaa gaagaggcgc ggccaagact gggccctctg ggtgtcggcg gtggggccaa
     1981 gccatctcaa aatccaagct cagccgtcgg tggcgtcgct ggaaccggtt caatcgcagg
     2041 agatgcaggg cagctgtgaa gtctgtcacg ttttactggc tggtgatcgt tctggtgttt
     2101 ctcaacactc tgacgatttc ctctgagcat tacaatcagc cagactggct gacgcagatt
     2161 caagatatag cgaacaaagt gctcttggct ttgttcacct gtgagatgct ggtgaagatg
     2221 tacagcctgg gcctccaggc ctacttcgtc tctctcttca accgcttcga ttgctttgtg
     2281 gtgtgtgggg gaatcaccga aaccatcctg gtggaactgg agctcatgtc tcccctgggc
     2341 gtctctgtgt tccggtgtgt acgtctcctg aggatcttca aagtgaccag gcactggact
     2401 tccctgagca acttggtggc gtccctgtta aactccatga agtccatcgc ctctctgctg
     2461 ttgctgctct tcctcttcat catcatcttc tccctgctgg gaatgcagct gttcggaggg
     2521 aagttcaatt tcgatgagac acagaccaag cgaagcacct tcgacaactt cccacaggcg
     2581 ctcctgactg tgttccagat cctgacgggc gaagactgga atgcggtgat gtatgacggc
     2641 atcatggcct acggaggccc gtcctcctct ggaatgattg tctgtattta cttcatcatc
     2701 cttttcatct gtggtaacta tatcctgctg aacgtcttct tggccattgc tgtagacaat
     2761 ttggctgatg ctgaaagtct gaacactgct cagaaagagg aagccgaaga aaaagaaagg
     2821 aaaaaaattg ccagaaaaga aagcctagaa aacaaaaaaa acaacaaacc agaggtcaac
     2881 cagatagcca acagtgacaa caaggttact attgatgact atcaagagga ggctgaagat
     2941 aaggaccctt atccaccctg cgatgtgcca gtaggtgaag aggaagagga ggaggaagag
     3001 gacgagcctg aggttcctgc tggtccccgt cctcgaagaa tctcagagtt gaacatgaag
     3061 gagaaaattg cacccatccc cgaaggaagc gcattcttca ttcttagcaa gaccaacccg
     3121 atccgtgtgg gttgccacaa actcatcaac caccacatct tcaccaacct catcctggtc
     3181 ttcatcatgc tgagcagcgc tgccctggcc gcagaggatc ccatccgcag ccactccttc
     3241 cgcaacacta tactgggcta ctttgactat gctttcacag ccatctttac ggttgaaatc
     3301 ctgttaaaga tgacaacttt tggagcgttc ttgcacaaag gggctttctg taggaactac
     3361 ttcaatttgc tggacatgct ggtcgttggg gtgtctctgg tgtcatttgg gattcaatcc
     3421 agtgccatct cggttgtgaa gattctgagg gtcttaaggg tcttgaggcc tctcagagca
     3481 atcaacagag caaaaggact taagcacgtg gtccagtgtg tctttgtggc catccgaacc
     3541 atcggcaaca tcatgatcgt cacgaccctg ctccagttca tgtttgcttg cattggggtc
     3601 cagctgttca aggggaagtt ctaccgttgc acagatgagg ccaaaagtaa ccccgaggag
     3661 tgcagggggc ttttcatcct ttataaggac ggcgatgtcg acagtcccgt ggtccgtgag
     3721 aggatctggc aaaacagtga tttcaatttc gacaatgtcc tttcggctat gatggcgctc
     3781 ttcacggtct cgacttttga gggctggccc gcgttgctgt acaaagctat cgactcaaac
     3841 ggagagaacg ttggtcctgt ctacaactac cgtgtggaga tctccatctt cttcattatc
     3901 tacatcatca tcgtggcctt cttcatgatg aatatcttcg tgggcttcgt catcgtcacc
     3961 ttccaggagc agggagaaaa ggagtataag aactgtgagc tggacaaaaa tcagcgtcag
     4021 tgtgtggaat atgccttgaa ggcccgcccc ttaaggagat acatccccaa aaacccatac
     4081 cagtacaagt tctggtacgt ggtgaactcc tcgcctttcg aatatatgat gtttgtcctc
     4141 atcatgctca acacgctctg cctggccatg cagcactatg agcaatccaa gatgttcaat
     4201 gacgccatgg acattctgaa catggtcttc acgggggtct tcaccgttga gatggttttg
     4261 aaagtcatcg catttaagcc caagcactat ttcactgatg catggaatac ttttgatgcc
     4321 ttaattgttg tcggtagcgt cgttgatatt gctataactg aagtgaatcc atctgacagt
     4381 gagaatatcc ctctcccaac tgccacacct ggggtaagat cagggactgg tcccaggggc
     4441 tgggccttct ccttgacttt atttgaccat gtcgagtttt ccactggtgt cctgtattct
     4501 ccatgatcgt ccttccagaa cagtgtctgt agtggtttgc actcatcatc cgtgtccagt
     4561 gctctcgagc cgcccagcgt tctcctctaa cacagtagaa cacgtggaca tgcatgtgcc
     4621 gtgtggatgc cgtttccccc ctaagccctg tgttgttagc atgtgacttt ttttctttca
     4681 tatcatgctt tttgaggggt aaggccctag aaacgcatct tcagttctca cctctgtcac
     4741 ctttgcgtcc gttgctgttt ttctgaaagt gtcgcatgtt ctgctttcca ctgggtctga
     4801 cctctccgtg ataacccttc agaactctga agagagcaat agaatctcca
//
