LOCUS       NM_001106561            1829 bp    mRNA    linear   ROD 03-APR-2024
DEFINITION  Rattus norvegicus calcium channel flower domain containing 1
            (Cacfd1), mRNA.
ACCESSION   NM_001106561 XM_001078807 XM_216020
VERSION     NM_001106561.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1829)
  AUTHORS   Yao,C.K., Liu,Y.T., Lee,I.C., Wang,Y.T. and Wu,P.Y.
  TITLE     A Ca2+ channel differentially regulates Clathrin-mediated and
            activity-dependent bulk endocytosis
  JOURNAL   PLoS Biol 15 (4), e2000931 (2017)
   PUBMED   28414717
  REMARK    GeneRIF: The role of Fwe protein isoform 2 in endocytosis in
            hippocampal neurons
            Publication Status: Online-Only
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from CH474001.2.
            
            On or before Oct 4, 2007 this sequence version replaced
            XM_216020.4, XM_001078807.1.
            
            ##Evidence-Data-START##
            RNAseq introns :: single sample supports all introns SAMD00132265,
                              SAMD00132298 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..1829
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="3"
                     /map="3p12"
     gene            1..1829
                     /gene="Cacfd1"
                     /gene_synonym="Fwe; Fwe2; RGD1311501"
                     /note="calcium channel flower domain containing 1"
                     /db_xref="GeneID:296599"
                     /db_xref="RGD:1311501"
     exon            1..89
                     /gene="Cacfd1"
                     /gene_synonym="Fwe; Fwe2; RGD1311501"
                     /inference="alignment:Splign:2.1.0"
     exon            90..274
                     /gene="Cacfd1"
                     /gene_synonym="Fwe; Fwe2; RGD1311501"
                     /inference="alignment:Splign:2.1.0"
     exon            275..1121
                     /gene="Cacfd1"
                     /gene_synonym="Fwe; Fwe2; RGD1311501"
                     /inference="alignment:Splign:2.1.0"
     CDS             1004..1519
                     /gene="Cacfd1"
                     /gene_synonym="Fwe; Fwe2; RGD1311501"
                     /note="calcium channel flower domain-containing protein 1"
                     /codon_start=1
                     /product="calcium channel flower homolog"
                     /protein_id="NP_001100031.1"
                     /db_xref="GeneID:296599"
                     /db_xref="RGD:1311501"
                     /translation="MSGSVAAGAAAGPVPPAQEEGMTWWYRWLCRLAGVLGAVSCAIS
                     GLFNCVTIHPLNIAAGVWMIMNAFILLLCEAPFCCQFVEFANTVAEKVDRLRSWQKAV
                     FYCGMAIVPIVMSLTLTTLLGNAIAFATGVLYGLSALGKKGDAISYARIQQQRQQADE
                     EKLAETFEGEL"
     exon            1122..1194
                     /gene="Cacfd1"
                     /gene_synonym="Fwe; Fwe2; RGD1311501"
                     /inference="alignment:Splign:2.1.0"
     exon            1195..1320
                     /gene="Cacfd1"
                     /gene_synonym="Fwe; Fwe2; RGD1311501"
                     /inference="alignment:Splign:2.1.0"
     exon            1321..1428
                     /gene="Cacfd1"
                     /gene_synonym="Fwe; Fwe2; RGD1311501"
                     /inference="alignment:Splign:2.1.0"
     exon            1429..1829
                     /gene="Cacfd1"
                     /gene_synonym="Fwe; Fwe2; RGD1311501"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 ggtggtggtg aggcagcatc gtgtgctgcc gggaggtgga gtgctgctac tgtaccggag
       61 ccaacctgcc ccagggacct tctacaaaga atgtgacagg cagctctttg gacctcgggg
      121 tgaaatcacg agtccctcac tgagcccaga cgggaggaag gcaggaacct gcagggtctt
      181 tgtcagtgtg gccccacagg cccgaattgc catccgtgcc ctggccagtg acatgggcac
      241 tgcttctgag gggaccagtg ccaactatgt ctcgatcagg gatatccacg gtctgaagac
      301 tacaacattt tgggggcagc aggtgctcta ctgggagtcc gaaggcagtg aggctgaact
      361 ggagtttagc catggcttcc tggaggcgca tgccagtttc cagggccagt attggaccat
      421 cccaccgagg acaccggaac aggtcaacag cgtggctctg tcctagattt ctctccaacg
      481 gccagctgga aagagaggca gccctactcc ggaaagggtg accatccccg gactatgcaa
      541 ctctagcctc ttgagaggtt caaatgcctg ccagccgaag ggaaccgctt ttagtgacct
      601 tttccaggtg cagaagggcg gggactggga gttggagatc agaaaagcaa tcccagtcct
      661 cagggctaat aaaggataca ggaaaccaga ctggagtttt cctcccataa cttgctgccc
      721 acagcaagcc tggcttgaaa gcttatttta ctgaaaggcg tggttccctg gaggtctgaa
      781 cagacccttt gccacttcta gatgacctct tccaatcttg ggaagagaaa agaccagtcc
      841 agacccagcg tacctgtaaa cacgcccctt ctccgccatt tctccccgcc cccggctatg
      901 gcctgcgggt ccgcccctat gctaatcacc gcctctccca caaggccgcg cgcgggtgga
      961 cacgtccctt tgtgcgcgcc cggtgctgcg cgcagcgttc agcatgagcg gctcggtcgc
     1021 cgccggagcg gccgccggcc cagtcccgcc ggcgcaagag gagggcatga catggtggta
     1081 ccggtggctg tgccgcctgg cgggagtgct aggggcagtg tcctgtgcca tctctggact
     1141 cttcaactgc gtcacgatcc accctctgaa catcgcagct ggggtgtgga tgatcatgaa
     1201 cgcctttatc ctgttgctgt gtgaggcccc cttctgctgc cagtttgtgg agtttgcaaa
     1261 cacagtagct gagaaggttg accggctgcg ctcctggcag aaggccgtct tctactgcgg
     1321 gatggccatc gtccccatcg tcatgagcct gaccctgact acactgctgg gcaacgccat
     1381 cgccttcgcc acgggggtgc tgtacggact gtctgccctg ggcaaaaagg gagatgccat
     1441 ttcttatgct cggatccagc agcagaggca gcaggcggat gaggagaagc tggctgagac
     1501 attcgagggg gaactgtgag gtgaggcagg gcgcctgtcc tcattgccta ctgccactgg
     1561 gctctgtgaa cttgtagaag gctgagtgtc agctctgctg aacatcctgg gacaggagta
     1621 cctgcaagtc tccatgcctc cagtctgcct gtgcctaccc tgttctgcgg acctcctgag
     1681 cctggagctc ctgccccact agtactgaag gcctgggctg cgggatatgg atggggtgaa
     1741 ctcactcctg tcagcctgtg gcacagatgc tgtgctggtg acccttccca ggcctaagag
     1801 cagtgtcccc tgaacacatc agtcctcac
//
