LOCUS       NM_001011917            1427 bp    mRNA    linear   ROD 23-MAR-2023
DEFINITION  Rattus norvegicus calcium binding protein 39-like (Cab39l), mRNA.
ACCESSION   NM_001011917 XM_214211
VERSION     NM_001011917.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1427)
  AUTHORS   Gaudet P, Livstone MS, Lewis SE and Thomas PD.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from BC083684.1.
            
            On Feb 11, 2005 this sequence version replaced XM_214211.2.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC083684.1, SRR8487227.210659.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMD00132261, SAMD00132262
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..1427
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="15"
                     /map="15p12"
     gene            1..1427
                     /gene="Cab39l"
                     /note="calcium binding protein 39-like"
                     /db_xref="GeneID:290291"
                     /db_xref="RGD:1308945"
     exon            1..139
                     /gene="Cab39l"
                     /inference="alignment:Splign:2.1.0"
     exon            140..209
                     /gene="Cab39l"
                     /inference="alignment:Splign:2.1.0"
     exon            210..351
                     /gene="Cab39l"
                     /inference="alignment:Splign:2.1.0"
     CDS             241..1254
                     /gene="Cab39l"
                     /codon_start=1
                     /product="calcium-binding protein 39-like"
                     /protein_id="NP_001011917.1"
                     /db_xref="GeneID:290291"
                     /db_xref="RGD:1308945"
                     /translation="MKKMPLFSKSHKNPAEIVKILKDNLAILEKQDKKTDKASEEVSK
                     SLQAMKELLCGAQDKEPPTEAVAQLAQELYSSGLLVTLIADLQLIDFEGKKDVTQIFN
                     NILRRQIGTRCPTVEYICSHPHILFMLLKGYEAPQIALRCGIMLRECIRHEPLAKVIL
                     FSNQFRDFFKYVELSTFDIASDAFATFKDLLTRHKVLVADFLEQNYDTIFEDYEKLLQ
                     SENYVTKRQSLKLLGELILDRHNFTIMTKYISKPENLKLMMNLLRDKSPNIQFEAFHV
                     FKVFVASPHKTQPIVEILLKNQPKLIEFLSSFQKERTDDEQFADEKNYLIKQIRDLKK
                     AAP"
     exon            352..516
                     /gene="Cab39l"
                     /inference="alignment:Splign:2.1.0"
     exon            517..635
                     /gene="Cab39l"
                     /inference="alignment:Splign:2.1.0"
     exon            636..804
                     /gene="Cab39l"
                     /inference="alignment:Splign:2.1.0"
     exon            805..864
                     /gene="Cab39l"
                     /inference="alignment:Splign:2.1.0"
     exon            865..930
                     /gene="Cab39l"
                     /inference="alignment:Splign:2.1.0"
     exon            931..1074
                     /gene="Cab39l"
                     /inference="alignment:Splign:2.1.0"
     exon            1075..1404
                     /gene="Cab39l"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 ccaccgtgaa gaagaaagaa cgtcaggagc taaggtttag tttaaacctg tagttgctgt
       61 ttggaaaatg aagatgcaga ccgcagattg gtggcttata tgttcttcat gcaagggcag
      121 catgctaaag gagagaagta actgcgctga ccagtgactg aaagctgcga gcattgggac
      181 agattggctg aagacaagga atttctaagc attccatatt ggaagaagag atttttatag
      241 atgaaaaaaa tgcctttgtt tagcaaatca cacaaaaatc cagcagaaat tgtcaaaatt
      301 ctgaaagaca acctggccat tttggaaaag caggacaaaa agacagacaa ggcttcagaa
      361 gaagtgtcaa agtctctgca agcgatgaag gagctcctgt gtggagcaca ggacaaggag
      421 ccccccacag aagcagtggc tcagctggca caggagctct atagcagcgg gctgttggtg
      481 acactcatag ctgatctgca gctcatagac tttgagggaa aaaaagatgt gacccagata
      541 ttcaacaaca tcctgagaag acagattggt acacggtgtc ctacggtgga atatatctgt
      601 tctcatcctc acatcctgtt tatgcttctc aaaggctatg aagccccaca gattgcctta
      661 cgctgtggga ttatgctaag agagtgcatt cgccatgagc cacttgccaa agtcatcctc
      721 ttttctaatc agttcagaga tttcttcaag tatgtggagc tgtccacatt tgatatcgct
      781 tcagatgcct tcgctacttt taaggattta ttaaccagac ataaagtgtt ggtagcagac
      841 ttcttagaac aaaattatga tactattttt gaagactatg agaagctgct gcaatctgag
      901 aactatgtga caaagagaca atctttaaag ttgctgggtg agctgatcct ggaccgccac
      961 aacttcacca ttatgaccaa atatattagc aagccagaga acctgaaact catgatgaac
     1021 ctgcttcggg acaaaagtcc aaacatccag ttcgaagcct tccatgtctt taaggtgttt
     1081 gtggccagcc cccataaaac gcagcctatt gtggagatcc tgttaaagaa tcagcccaaa
     1141 ctcattgagt ttctgagcag cttccagaaa gaaaggacag atgatgagca gttcgctgat
     1201 gagaagaact acctgattaa acagattcga gacttgaaga aagcggcccc atgaagacgg
     1261 tcctgccctg acagccattt gtctccctgg cccttgtgta cagtgttgtt tcaaagtctc
     1321 tgttcttggg aaggctttga aaaccctgac cttctcaact gattgttcaa ggtcgatgaa
     1381 atacaaacat ttgagtggaa aaaaaaaaaa aaaaaaaaaa aaaaaaa
//
